jgi.p|Nanoce1779_2|598993, mRNA_7503 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598993
Unique NamemRNA_7503
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length849
Alignment locationscaffold_20:128189..129185 +

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Properties
Property NameValue
TranscriptId599079
TrackFilteredModels2
ProteinId598993
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:128189..129185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598993gene_7503Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598993mRNA_7503-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7503CDS_7503Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7503 ID=mRNA_7503|Name=jgi.p|Nanoce1779_2|598993|organism=Nannochloropsis oceanica|type=mRNA|length=849bp
AGACACAGGGCAGCAATAGCATGTCTTCTGCTTCCTCCGCCTCCTCCGAG
TACATACGCACTACCACCAACTACATCAGTCGCAAGGCCCTGATCGAAGG
ACCACAGTATGTGGAGATGCGTGGACGAAGCATCGTGGAAGAAGACGTTA
CCATCCGTGGCGACCTCGCCCCTATCCGCGTTGGCCACTACTGCTTCTTC
GCTGCCGGCTCTGTGCTCAGTCCGTGCTTTATCATCGCCCCCCCGCAATA
TGAGCCTCAACAGCAACAGCAACAACCACCACAGCCACCACAACCACCCC
AGCAGCAGCAGTCAAAACAGCGATACATCCCTATGACAATCGGCAGCATG
ACTAACATAGGACCTGATGCCGTCATTCAAGCCGCTTCCATAGGCTCACA
CGTAGAGATCGGTGCAAACTGCATTGTTTCCCCACGATGCATCCTCAAGG
ATTGTTGTCGTCTAGCCCCAGGTACGGTACTACCTCCTGATTCTGTCGTT
CCTCCCTTTGCATTAATGAGTGGAGCGCCTGCTAAGATGGTGGGAGAGCT
ACCTCCCAGTGTGGTAAGTACGATGAAGGAGAAGGCACAGGGGAGGTATC
GGAGGAGGAAGCGGTGGATTGTTGGGGAGGGGGGTAGTGGCAGCAGCAGT
AGTAAGCGTTAGGGTCGTTGTAGTGACTGTGTGGACAGGGGTGAAAATAT
CGTGGCTTGTCGTTGTGAATGTACATGTACGTGTGAATGTATAATAGATA
GTGGAATATCCGTAGGGAGGAAAGAAGATCAGAGACAGATGGAGACAGGC
AGAGACGGAGAGAAAGACAGAGACGGACAGACAGACAGACAGACAGACA
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protein sequence of jgi.p|Nanoce1779_2|598993

>mRNA_7503-protein ID=mRNA_7503-protein|Name=jgi.p|Nanoce1779_2|598993|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MSSASSASSEYIRTTTNYISRKALIEGPQYVEMRGRSIVEEDVTIRGDLA
PIRVGHYCFFAAGSVLSPCFIIAPPQYEPQQQQQQPPQPPQPPQQQQSKQ
RYIPMTIGSMTNIGPDAVIQAASIGSHVEIGANCIVSPRCILKDCCRLAP
GTVLPPDSVVPPFALMSGAPAKMVGELPPSVVSTMKEKAQGRYRRRKRWI
VGEGGSGSSSSKR*
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mRNA from alignment at scaffold_20:128189..129185+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7503 ID=mRNA_7503|Name=jgi.p|Nanoce1779_2|598993|organism=Nannochloropsis oceanica|type=mRNA|length=997bp|location=Sequence derived from alignment at scaffold_20:128189..129185+ (Nannochloropsis oceanica)
AGACACAGGGCAGCAATAGCATGTCTTCTGCTTCCTCCGCCTCCTCCGAG
TACATACGCACTACCACCAACTACATCAGTCGCAAGGCCCTGATCGAAGG
ACCACAGTATGTGGAGATGCGTGGACGAGTACGTTTACTTCTTCATCACT
CTTTCCTCTTTCCGTTCTTTAGTCCCTTCCTTTCCAACTACTTCATCTCT
TTTTATCTTGTGGTCCCTCCGCTCGTATCCCTAACCAACGCCCCCTCCTT
CTCTCCCCTCCACTCTTCGAACACAGAGCATCGTGGAAGAAGACGTTACC
ATCCGTGGCGACCTCGCCCCTATCCGCGTTGGCCACTACTGCTTCTTCGC
TGCCGGCTCTGTGCTCAGTCCGTGCTTTATCATCGCCCCCCCGCAATATG
AGCCTCAACAGCAACAGCAACAACCACCACAGCCACCACAACCACCCCAG
CAGCAGCAGTCAAAACAGCGATACATCCCTATGACAATCGGCAGCATGAC
TAACATAGGACCTGATGCCGTCATTCAAGCCGCTTCCATAGGCTCACACG
TAGAGATCGGTGCAAACTGCATTGTTTCCCCACGATGCATCCTCAAGGAT
TGTTGTCGTCTAGCCCCAGGTACGGTACTACCTCCTGATTCTGTCGTTCC
TCCCTTTGCATTAATGAGTGGAGCGCCTGCTAAGATGGTGGGAGAGCTAC
CTCCCAGTGTGGTAAGTACGATGAAGGAGAAGGCACAGGGGAGGTATCGG
AGGAGGAAGCGGTGGATTGTTGGGGAGGGGGGTAGTGGCAGCAGCAGTAG
TAAGCGTTAGGGTCGTTGTAGTGACTGTGTGGACAGGGGTGAAAATATCG
TGGCTTGTCGTTGTGAATGTACATGTACGTGTGAATGTATAATAGATAGT
GGAATATCCGTAGGGAGGAAAGAAGATCAGAGACAGATGGAGACAGGCAG
AGACGGAGAGAAAGACAGAGACGGACAGACAGACAGACAGACAGACA
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Coding sequence (CDS) from alignment at scaffold_20:128189..129185+

>mRNA_7503 ID=mRNA_7503|Name=jgi.p|Nanoce1779_2|598993|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at scaffold_20:128189..129185+ (Nannochloropsis oceanica)
ATGTCTTCTGCTTCCTCCGCCTCCTCCGAGTACATACGCACTACCACCAA
CTACATCAGTCGCAAGGCCCTGATCGAAGGACCACAGTATGTGGAGATGC
GTGGACGAAGCATCGTGGAAGAAGACGTTACCATCCGTGGCGACCTCGCC
CCTATCCGCGTTGGCCACTACTGCTTCTTCGCTGCCGGCTCTGTGCTCAG
TCCGTGCTTTATCATCGCCCCCCCGCAATATGAGCCTCAACAGCAACAGC
AACAACCACCACAGCCACCACAACCACCCCAGCAGCAGCAGTCAAAACAG
CGATACATCCCTATGACAATCGGCAGCATGACTAACATAGGACCTGATGC
CGTCATTCAAGCCGCTTCCATAGGCTCACACGTAGAGATCGGTGCAAACT
GCATTGTTTCCCCACGATGCATCCTCAAGGATTGTTGTCGTCTAGCCCCA
GGTACGGTACTACCTCCTGATTCTGTCGTTCCTCCCTTTGCATTAATGAG
TGGAGCGCCTGCTAAGATGGTGGGAGAGCTACCTCCCAGTGTGGTAAGTA
CGATGAAGGAGAAGGCACAGGGGAGGTATCGGAGGAGGAAGCGGTGGATT
GTTGGGGAGGGGGGTAGTGGCAGCAGCAGTAGTAAGCGTTAGATGTCTTC
TGCTTCCTCCGCCTCCTCCGAGTACATACGCACTACCACCAACTACATCA
GTCGCAAGGCCCTGATCGAAGGACCACAGTATGTGGAGATGCGTGGACGA
AGCATCGTGGAAGAAGACGTTACCATCCGTGGCGACCTCGCCCCTATCCG
CGTTGGCCACTACTGCTTCTTCGCTGCCGGCTCTGTGCTCAGTCCGTGCT
TTATCATCGCCCCCCCGCAATATGAGCCTCAACAGCAACAGCAACAACCA
CCACAGCCACCACAACCACCCCAGCAGCAGCAGTCAAAACAGCGATACAT
CCCTATGACAATCGGCAGCATGACTAACATAGGACCTGATGCCGTCATTC
AAGCCGCTTCCATAGGCTCACACGTAGAGATCGGTGCAAACTGCATTGTT
TCCCCACGATGCATCCTCAAGGATTGTTGTCGTCTAGCCCCAGGTACGGT
ACTACCTCCTGATTCTGTCGTTCCTCCCTTTGCATTAATGAGTGGAGCGC
CTGCTAAGATGGTGGGAGAGCTACCTCCCAGTGTGGTAAGTACGATGAAG
GAGAAGGCACAGGGGAGGTATCGGAGGAGGAAGCGGTGGATTGTTGGGGA
GGGGGGTAGTGGCAGCAGCAGTAGTAAGCGTTAG
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Synonyms
Publications