jgi.p|Nanoce1779_2|598979, mRNA_7500 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598979
Unique NamemRNA_7500
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length993
Alignment locationscaffold_20:121396..123112 -

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Properties
Property NameValue
TranscriptId599065
TrackFilteredModels2
ProteinId598979
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:121396..123112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598979gene_7500Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598979mRNA_7500-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7500CDS_7500Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7500 ID=mRNA_7500|Name=jgi.p|Nanoce1779_2|598979|organism=Nannochloropsis oceanica|type=mRNA|length=993bp
CTTACGAAGGGGCGCTATGAGTGTATGTGTTGTGTGTGCACGCGTCGTGG
TGATAGGACACATGGCTTCTCACTGTTGGAGCCCCTGAAGCTCCTCACTC
ATCGCCCAAAGAAGCCCGCCTGCCCACGATCATTCCTCACATTCTACCCA
ATACCAAGCACAGGTAAGCCAAAAAGGTCGTCCAGTACTAAGAGGACATT
AAAAGCTTTCCGCAACGCACCCGTCACGTGCAACAACGTCTCGTTTTCCT
GCTTCGAGAGAGCAAGGAAACTACAGGAAAAAGAATTAACCTCCCTTGGA
ACTTTCTATATTACCTCGTTACCCCGAAGCCTCAGGCAGTAGCCCTGGTC
GCAGTAGGTGAAAGAGCAGAGTCCAGAAATGGCATCGTTTGGAGTGGTCG
TGCCAGGCCGGGCTGTTGTCATCGACTGGCGCCCTATCGACAACGCCAAG
TTCGTAACCGAAATAGCCGCTCCCGCACAAGTAAGCGATTTGACCTTCTT
CCTTCTTCCCAACATTGTCTTGCCTGATGGTGCCGGGGTGGTGCTTTATT
ACTCGCTTCCGCCGTTTACGGAGTGGAGCGTGCTGGGAGCTTTGACGTTG
GAGAAACCGAGTGGCGTCTTCCGGACAGGGTGGTCCACGATCGAGGGTAT
CAGCCAGATGCCCGTTATTCAGCTTGGGGTCTCCTTAGAAAGCCTCGACA
CAGTTTCAAACCTGGAGCTCCAAACATCCGGAGTGGATGAACGGCGGCTG
TTTGCTCACAAAATTGCTCAAGACCTGTGGTCCTTTGTCTGCTCCTTCGC
TCAGCGGACCCAACAGGCAGGGCAGGAGGTTGTGTTGCTACCCGTGAACG
CTATGGATTTGTGGTTGGAGAAATTCGATCGGAAATATCGCCTTGATCCG
TCGTTTATGTTCAAGGCCGGGAGTTAGTTTTAGGAAGGGGAGGGAGGGAG
GGAGGAGGTTGGAATTAGGGGGTCGCAAGACAAGATGATAAAG
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protein sequence of jgi.p|Nanoce1779_2|598979

>mRNA_7500-protein ID=mRNA_7500-protein|Name=jgi.p|Nanoce1779_2|598979|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MASFGVVVPGRAVVIDWRPIDNAKFVTEIAAPAQVSDLTFFLLPNIVLPD
GAGVVLYYSLPPFTEWSVLGALTLEKPSGVFRTGWSTIEGISQMPVIQLG
VSLESLDTVSNLELQTSGVDERRLFAHKIAQDLWSFVCSFAQRTQQAGQE
VVLLPVNAMDLWLEKFDRKYRLDPSFMFKAGS*
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mRNA from alignment at scaffold_20:121396..123112-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7500 ID=mRNA_7500|Name=jgi.p|Nanoce1779_2|598979|organism=Nannochloropsis oceanica|type=mRNA|length=1717bp|location=Sequence derived from alignment at scaffold_20:121396..123112- (Nannochloropsis oceanica)
CTTACGAAGGGGCGCTATGAGTGTATGTGTTGTGTGTGCACGCGTCGTGG
TGATAGGACACATGGCTTCTCACTGTTGGAGCCCCTGAAGCTCCTCACTC
ATCGCCCAAAGAAGCCCGCCTGCCCACGATCATTCCTCACATTCTACCCA
ATACCAAGCACAGGTAAGCCAAAAAGGTCGTCCAGTACTAAGAGGACATT
AAAAGCTTTCCGCAACGCACCCGTCACGTGCAACAACGTCTCGTTTTCCT
GCTTCGAGAGAGCAAGGAAACTACAGGAAAAAGAATTAACCTCCCTTGGA
ACTTTCTATATTACCTCGTTACCCCGAAGCCTCAGGCAGTAGCCCTGGTC
GCAGTAGGTGAAAGAGCAGAGTCCAGAAATGGCATCGTTTGGAGTGGTCG
TGCCAGGCCGGGCTGTTGTCATCGACTGGCGGTGAGTTGTATCCGGAAGC
CGCTCTCCCTCCCACCCCTCTTACTCAATGCCTCCCCACCCAAGCCTCCT
GCCTGACCCTACCAACGCACTTTGCGGATAAAAAAAGTGACCACAGCACG
CCCAATGTAACGCATTATGGCATCGAATCGCTCCCTGTTTCGGCCGCCAC
CATTTTTCGTTTTCATAAGCACCTTATCCTCACTACCCCTTCCACGTACC
CCCTCCGCCCCTCCCTCCCTCCCACTCAGCCCTATCGACAACGCCAAGTT
CGTAACCGAAATAGCCGCTCCCGCACAAGTAAGCGATTTGACCTTCTTCC
TTCTTCCCAACATTGTCTTGCCTGATGGTGCCGGGGTGGTGCTTTATTAC
TCGCTTCCGCCGTTTACGGAGTGGAGCGTGCTGGGAGCTTTGACGTTGGA
GAAACCGAGGTAAGGAAGGAGGGAGGGATGAATTGGGGGAAATTAAAAGA
GTGAGTAGAGGAATGTTTTTTTCTCTTCTTTTGACTCTCACCCCAAGTTG
AGTTGTCTCACGGGTCGGTGTGCGGTGTTTTCTTCCTTCTTTCCCCTCTC
CAACAGTGGCGTCTTCCGGACAGGGTGGTCCACGATCGAGGGTATCAGCC
AGATGCCCGTTATTCAGCTTGGGGTCTCCTTAGAAAGGTACACCCTGCCT
CTCTCTTCTTCCTATCTTCCCTCCATCGGCTCCTCCTACCCTCCCTGCTT
CAGGGGTGGATAATGTTTGTACCGAAATGACCTAGTAGTTGCACTCCTCC
CCCGCCCCCCTTCCCTCCCCCTCCCCTCCCTCATTTACTTCTAATTGTAA
GCATACCACCTGAACCATCCAGTGGCTAAGACTCATTGGCATCGCCATTT
ATGGACGGCGCCCACCCTTTTCCTGCTTTCCCTTCATGTTTTATCGTTCA
TCGTCCACTGACTGCTTAACTCAAACCCCCTCCGTTCCACCTGCCATGCC
TTTGTCCCTCTCTCAGCCTCGACACAGTTTCAAACCTGGAGCTCCAAACA
TCCGGAGTGGATGAACGGCGGCTGTTTGCTCACAAAATTGCTCAAGACCT
GTGGTCCTTTGTCTGCTCCTTCGCTCAGCGGACCCAACAGGCAGGGCAGG
AGGTTGTGTTGCTACCCGTGAACGCTATGGATTTGTGGTTGGAGAAATTC
GATCGGAAATATCGCCTTGATCCGTCGTTTATGTTCAAGGCCGGGAGTTA
GTTTTAGGAAGGGGAGGGAGGGAGGGAGGAGGTTGGAATTAGGGGGTCGC
AAGACAAGATGATAAAG
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Coding sequence (CDS) from alignment at scaffold_20:121396..123112-

>mRNA_7500 ID=mRNA_7500|Name=jgi.p|Nanoce1779_2|598979|organism=Nannochloropsis oceanica|type=CDS|length=2196bp|location=Sequence derived from alignment at scaffold_20:121396..123112- (Nannochloropsis oceanica)
CCTCGACACAGTTTCAAACCTGGAGCTCCAAACATCCGGAGTGGATGAAC
GGCGGCTGTTTGCTCACAAAATTGCTCAAGACCTGTGGTCCTTTGTCTGC
TCCTTCGCTCAGCGGACCCAACAGGCAGGGCAGGAGGTTGTGTTGCTACC
CGTGAACGCTATGGATTTGTGGTTGGAGAAATTCGATCGGAAATATCGCC
TTGATCCGTCGTTTATGTTCAAGGCCGGGAGTTAGTGGCGTCTTCCGGAC
AGGGTGGTCCACGATCGAGGGTATCAGCCAGATGCCCGTTATTCAGCTTG
GGGTCTCCTTAGAAAGCCCTATCGACAACGCCAAGTTCGTAACCGAAATA
GCCGCTCCCGCACAAGTAAGCGATTTGACCTTCTTCCTTCTTCCCAACAT
TGTCTTGCCTGATGGTGCCGGGGTGGTGCTTTATTACTCGCTTCCGCCGT
TTACGGAGTGGAGCGTGCTGGGAGCTTTGACGTTGGAGAAACCGAGATGG
CATCGTTTGGAGTGGTCGTGCCAGGCCGGGCTGTTGTCATCGACTGGCGC
CTCGACACAGTTTCAAACCTGGAGCTCCAAACATCCGGAGTGGATGAACG
GCGGCTGTTTGCTCACAAAATTGCTCAAGACCTGTGGTCCTTTGTCTGCT
CCTTCGCTCAGCGGACCCAACAGGCAGGGCAGGAGGTTGTGTTGCTACCC
GTGAACGCTATGGATTTGTGGTTGGAGAAATTCGATCGGAAATATCGCCT
TGATCCGTCGTTTATGTTCAAGGCCGGGAGTTAGTGGCGTCTTCCGGACA
GGGTGGTCCACGATCGAGGGTATCAGCCAGATGCCCGTTATTCAGCTTGG
GGTCTCCTTAGAAAGCCCTATCGACAACGCCAAGTTCGTAACCGAAATAG
CCGCTCCCGCACAAGTAAGCGATTTGACCTTCTTCCTTCTTCCCAACATT
GTCTTGCCTGATGGTGCCGGGGTGGTGCTTTATTACTCGCTTCCGCCGTT
TACGGAGTGGAGCGTGCTGGGAGCTTTGACGTTGGAGAAACCGAGATGGC
ATCGTTTGGAGTGGTCGTGCCAGGCCGGGCTGTTGTCATCGACTGGCGCC
TCGACACAGTTTCAAACCTGGAGCTCCAAACATCCGGAGTGGATGAACGG
CGGCTGTTTGCTCACAAAATTGCTCAAGACCTGTGGTCCTTTGTCTGCTC
CTTCGCTCAGCGGACCCAACAGGCAGGGCAGGAGGTTGTGTTGCTACCCG
TGAACGCTATGGATTTGTGGTTGGAGAAATTCGATCGGAAATATCGCCTT
GATCCGTCGTTTATGTTCAAGGCCGGGAGTTAGTGGCGTCTTCCGGACAG
GGTGGTCCACGATCGAGGGTATCAGCCAGATGCCCGTTATTCAGCTTGGG
GTCTCCTTAGAAAGCCCTATCGACAACGCCAAGTTCGTAACCGAAATAGC
CGCTCCCGCACAAGTAAGCGATTTGACCTTCTTCCTTCTTCCCAACATTG
TCTTGCCTGATGGTGCCGGGGTGGTGCTTTATTACTCGCTTCCGCCGTTT
ACGGAGTGGAGCGTGCTGGGAGCTTTGACGTTGGAGAAACCGAGATGGCA
TCGTTTGGAGTGGTCGTGCCAGGCCGGGCTGTTGTCATCGACTGGCGCCT
CGACACAGTTTCAAACCTGGAGCTCCAAACATCCGGAGTGGATGAACGGC
GGCTGTTTGCTCACAAAATTGCTCAAGACCTGTGGTCCTTTGTCTGCTCC
TTCGCTCAGCGGACCCAACAGGCAGGGCAGGAGGTTGTGTTGCTACCCGT
GAACGCTATGGATTTGTGGTTGGAGAAATTCGATCGGAAATATCGCCTTG
ATCCGTCGTTTATGTTCAAGGCCGGGAGTTAGTGGCGTCTTCCGGACAGG
GTGGTCCACGATCGAGGGTATCAGCCAGATGCCCGTTATTCAGCTTGGGG
TCTCCTTAGAAAGCCCTATCGACAACGCCAAGTTCGTAACCGAAATAGCC
GCTCCCGCACAAGTAAGCGATTTGACCTTCTTCCTTCTTCCCAACATTGT
CTTGCCTGATGGTGCCGGGGTGGTGCTTTATTACTCGCTTCCGCCGTTTA
CGGAGTGGAGCGTGCTGGGAGCTTTGACGTTGGAGAAACCGAGATGGCAT
CGTTTGGAGTGGTCGTGCCAGGCCGGGCTGTTGTCATCGACTGGCG
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Synonyms
Publications