jgi.p|Nanoce1779_2|636056, mRNA_750 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|636056
Unique Name	mRNA_750
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1743
Alignment location	scaffold_2:351291..353119 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	636142
Track	FilteredModels2
ProteinId	636056

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:351291..353119 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|636056	gene_750	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|636056	mRNA_750-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_750	CDS_750	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:351291..353119+
coding sequence from alignment at scaffold_2:351291..353119+

mRNA sequence

>mRNA_750 ID=mRNA_750|Name=jgi.p|Nanoce1779_2|636056|organism=Nannochloropsis oceanica|type=mRNA|length=1743bp
ATGGACGTGACGAAGGAGAATTTTGCCGAGACCCTGCCCGAGCTCGAGGT
GGCACTGCAGGACTGCGAGTTCGCGACCATCGACTTCGAGATGTCGGGAA
TCAGTTTGCCTGGGAATAGCGGTTCTTCCCGCCCTAATTATGGCGACACA
CCACAGGAGAGGTATGCCAAAACGTACCCTATCAGCTCTCGTTACAATAT
CGTGCAGATGGGCGTCTGTATTTTTAGCAAAGTGCCAGACGAGAAGACAA
AGAGCAAGAAGGGGGAAGAGGCCAAAAAGGAAACTTTAATCGCACGGCCA
TTCAATTTTTACACTTTTGCCGCAGAGGGGGAGGACGTGGTCCTGAGCCT
GTCTGCGATGCATTTTTTGAAGGACCAAGGGATGGACTTCAATAAATGGG
TTCGACAGGGCGTATCGTACACAAATGAGGCAGGCGAGGCGTATTTGGTG
AAGAAAATGGAGCAGGAACGGGAGCAGGACCGACAGGACGCCGAGGCAGC
TGCAGCAGCAGCAGCGGGAGGAGGAGAAGCGTCGGAAAAGAGCAGGATAA
AGCTGACAAGGGCAGCAGATATCGACTTCGTCAAGGCCCAGATGGAGATG
GTTACAGCGTGGGTTAAGACTGAAAAGGTCGAGGGGAGTGGGAAAGGGAC
AGAGGAGGAAGTGAGGGAGGCGGCCCGCAGATTCAAGGAGTTGAGCTTGA
CGCGGACGAATGCGTTTTTGCGTCGGGTGTTGTTTGAAGCAATTGGCGCG
GCGTATCCGGAGATAGTGACGGAGGCCAGGAATAACCAGGTGATATTAAT
GAGGCTGTCGGAGGCGGAGAAGAAGGAGAGAGACGCTGCCAGGGAGGCGG
CGAGGCAGGCCAAGTTGACCAGTAAGGTGGGCATGCGCCTGGTGTTCAAG
GCGATTGGCGCGTGTGGTAAACCGTTGGTGGTCCACAATGGGATGCACGA
CTTGCTCTTCATGATGTCTGCATTCAACAAGCCACTTCCCGAGACCTTGA
TAGACTTGAAAGGGCAGCTGTCGGAATGCTTCCCGAATACGATAATTTAC
GATACGAAGTACATCTCGACGAGGGAAGAGTTGTTGGGCAAAACCTTGGG
GACGGATACGGGCGTGGAGGGGCTGTATCATACCTTGGTGGTAGAGGAGG
ACAAGAAGGAGAAAGGGGCTGGGATCGCGGGGTATGATGCTTATTTGACG
GGGGCAATTTTTGCGAGAATGCGAGAGTTGTTGAAGGAGGGAGGGAAGGA
GCGGGAGGTGGCCATGAAGGTGTTCAATTACCGGAGTTTGTTCGAGACGA
ATCTCGGGGGAAATGATGAGTTGGTGTACCGGAAGGAGGGGCAGTTGGTG
TTTCATTTGGGGTGGAGGAAGGAGGATGGCACAAGATTGAATGACGATTC
CTTGATGAAAGTATTTGGAGAGCGGGCGGCGAGTGTCTCAATCTTGTGGG
TTGATGACTTGTCGGCGTTTGCTGTCGTAAATGGAGAGGAGGGCTTGAAG
GAGGAAGACGTGATGGGCGGGCTTACGGGGCCGGCAGCGGCCGTCGTGCG
GGTGACGCCTTATAAGAAATGGTTGGAAGGGAAAGAGGCGAAAGAAAGGG
TCGGGAGTGGACGAAGGGATGGAGGGGAAGATGATGATGTGGCGGGAGCG
TTGGCTTGGATCATGAAGAGGACGTTGCGGCTGCTGGGGTTGAAGCCGGG
GGAGAGGGAGGGACAAGTTGGGAAGCGCTTGCGTAGTGCCTAG

protein sequence of jgi.p|Nanoce1779_2|636056

>mRNA_750-protein ID=mRNA_750-protein|Name=jgi.p|Nanoce1779_2|636056|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MDVTKENFAETLPELEVALQDCEFATIDFEMSGISLPGNSGSSRPNYGDT
PQERYAKTYPISSRYNIVQMGVCIFSKVPDEKTKSKKGEEAKKETLIARP
FNFYTFAAEGEDVVLSLSAMHFLKDQGMDFNKWVRQGVSYTNEAGEAYLV
KKMEQEREQDRQDAEAAAAAAAGGGEASEKSRIKLTRAADIDFVKAQMEM
VTAWVKTEKVEGSGKGTEEEVREAARRFKELSLTRTNAFLRRVLFEAIGA
AYPEIVTEARNNQVILMRLSEAEKKERDAAREAARQAKLTSKVGMRLVFK
AIGACGKPLVVHNGMHDLLFMMSAFNKPLPETLIDLKGQLSECFPNTIIY
DTKYISTREELLGKTLGTDTGVEGLYHTLVVEEDKKEKGAGIAGYDAYLT
GAIFARMRELLKEGGKEREVAMKVFNYRSLFETNLGGNDELVYRKEGQLV
FHLGWRKEDGTRLNDDSLMKVFGERAASVSILWVDDLSAFAVVNGEEGLK
EEDVMGGLTGPAAAVVRVTPYKKWLEGKEAKERVGSGRRDGGEDDDVAGA
LAWIMKRTLRLLGLKPGEREGQVGKRLRSA*

mRNA from alignment at scaffold_2:351291..353119+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_750 ID=mRNA_750|Name=jgi.p|Nanoce1779_2|636056|organism=Nannochloropsis oceanica|type=mRNA|length=1829bp|location=Sequence derived from alignment at scaffold_2:351291..353119+ (Nannochloropsis oceanica)
ATGGACGTGACGAAGGAGAATTTTGCCGAGACCCTGCCCGAGCTCGAGGT
GGCACTGCAGGACTGCGAGTTCGCGACCATCGACTTCGAGATGTCGGGAA
TCAGTTTGCCTGGGAATAGCGGTTCTTCCCGCCCTAATTATGGCGACACA
CCACAGGAGAGGTATGCCAAAACGTACCCTATCAGCTCTCGTTACAATAT
CGTGCAGATGGGCGTCTGTATTTTTAGCAAAGTGCCAGACGAGAAGACAA
AGAGCAAGAAGGGGGAAGAGGCCAAAAAGGAAACTTTAATCGCACGGCCA
TTCAATTTTTACACTTTTGCCGCAGAGGGGGAGGACGTGGTCCTGAGCCT
GTCTGCGATGCATTTTTTGAAGGACCAAGGGATGGACTTCAATAAATGGG
TTCGACAGGGCGTATCGTACACAAATGAGGCAGGCGAGGCGTATTTGGTG
AAGAAAATGGAGCAGGAACGGGAGCAGGACCGACAGGACGCCGAGGCAGC
TGCAGCAGCAGCAGCGGGAGGAGGAGAAGCGTCGGAAAAGAGCAGGATAA
AGCTGACAAGGGCAGCAGATATCGACTTCGTCAAGGCCCAGATGGAGATG
GTTACAGCGTGGGTTAAGACTGAAAAGGTCGAGGGGAGTGGGAAAGGGAC
AGAGGAGGAAGTGAGGGAGGCGGCCCGCAGATTCAAGGAGTTGAGCTTGA
CGCGGACGAATGCGTTTTTGCGTCGGGTGTTGTTTGAAGCAATTGGCGCG
GCGTATCCGGAGATAGTGACGGAGGCCAGGAATAACCAGGTGATATTAAT
GAGGCTGTCGGAGGCGGAGAAGAAGGAGAGAGACGCTGCCAGGGAGGCGG
CGAGGCAGGCCAAGTTGACCAGTAAGGTGGGCATGCGCCTGGTGTTCAAG
GCGATTGGCGCGTGTGGTAAACCGTTGGTGGTCCACAATGGGATGCACGA
CTTGCTCTTCATGATGTCTGCATTCAACAAGCCACTTCCCGAGACCTTGA
TAGACTTGAAAGGGCAGCTGTCGGAATGCTTCCCGAATACGATAATTTAC
GATACGAAGTACATCTCGACGAGGGAAGAGTTGTTGGGCAAAACCTTGGG
GACGGATACGGGCGTGGAGGGGCTGTATCATACCTTGGTGGTAGAGGAGG
ACAAGAAGGAGAAAGGGGCTGGGATCGGTCCGAAGTTGGTCTTGGCGGAG
GGGTTTGAGAAATATGCGGGAGGAGGGGAGGGGGGGGGGGGGGGGGAGGG
TATGCACATGAAGCGGGGTATGATGCTTATTTGACGGGGGCAATTTTTGC
GAGAATGCGAGAGTTGTTGAAGGAGGGAGGGAAGGAGCGGGAGGTGGCCA
TGAAGGTGTTCAATTACCGGAGTTTGTTCGAGACGAATCTCGGGGGAAAT
GATGAGTTGGTGTACCGGAAGGAGGGGCAGTTGGTGTTTCATTTGGGGTG
GAGGAAGGAGGATGGCACAAGATTGAATGACGATTCCTTGATGAAAGTAT
TTGGAGAGCGGGCGGCGAGTGTCTCAATCTTGTGGGTTGATGACTTGTCG
GCGTTTGCTGTCGTAAATGGAGAGGAGGGCTTGAAGGAGGAAGACGTGAT
GGGCGGGCTTACGGGGCCGGCAGCGGCCGTCGTGCGGGTGACGCCTTATA
AGAAATGGTTGGAAGGGAAAGAGGCGAAAGAAAGGGTCGGGAGTGGACGA
AGGGATGGAGGGGAAGATGATGATGTGGCGGGAGCGTTGGCTTGGATCAT
GAAGAGGACGTTGCGGCTGCTGGGGTTGAAGCCGGGGGAGAGGGAGGGAC
AAGTTGGGAAGCGCTTGCGTAGTGCCTAG

Coding sequence (CDS) from alignment at scaffold_2:351291..353119+

>mRNA_750 ID=mRNA_750|Name=jgi.p|Nanoce1779_2|636056|organism=Nannochloropsis oceanica|type=CDS|length=3486bp|location=Sequence derived from alignment at scaffold_2:351291..353119+ (Nannochloropsis oceanica)
ATGGACGTGACGAAGGAGAATTTTGCCGAGACCCTGCCCGAGCTCGAGGT
GGCACTGCAGGACTGCGAGTTCGCGACCATCGACTTCGAGATGTCGGGAA
TCAGTTTGCCTGGGAATAGCGGTTCTTCCCGCCCTAATTATGGCGACACA
CCACAGGAGAGGTATGCCAAAACGTACCCTATCAGCTCTCGTTACAATAT
CGTGCAGATGGGCGTCTGTATTTTTAGCAAAGTGCCAGACGAGAAGACAA
AGAGCAAGAAGGGGGAAGAGGCCAAAAAGGAAACTTTAATCGCACGGCCA
TTCAATTTTTACACTTTTGCCGCAGAGGGGGAGGACGTGGTCCTGAGCCT
GTCTGCGATGCATTTTTTGAAGGACCAAGGGATGGACTTCAATAAATGGG
TTCGACAGGGCGTATCGTACACAAATGAGGCAGGCGAGGCGTATTTGGTG
AAGAAAATGGAGCAGGAACGGGAGCAGGACCGACAGGACGCCGAGGCAGC
TGCAGCAGCAGCAGCGGGAGGAGGAGAAGCGTCGGAAAAGAGCAGGATAA
AGCTGACAAGGGCAGCAGATATCGACTTCGTCAAGGCCCAGATGGAGATG
GTTACAGCGTGGGTTAAGACTGAAAAGGTCGAGGGGAGTGGGAAAGGGAC
AGAGGAGGAAGTGAGGGAGGCGGCCCGCAGATTCAAGGAGTTGAGCTTGA
CGCGGACGAATGCGTTTTTGCGTCGGGTGTTGTTTGAAGCAATTGGCGCG
GCGTATCCGGAGATAGTGACGGAGGCCAGGAATAACCAGGTGATATTAAT
GAGGCTGTCGGAGGCGGAGAAGAAGGAGAGAGACGCTGCCAGGGAGGCGG
CGAGGCAGGCCAAGTTGACCAGTAAGGTGGGCATGCGCCTGGTGTTCAAG
GCGATTGGCGCGTGTGGTAAACCGTTGGTGGTCCACAATGGGATGCACGA
CTTGCTCTTCATGATGTCTGCATTCAACAAGCCACTTCCCGAGACCTTGA
TAGACTTGAAAGGGCAGCTGTCGGAATGCTTCCCGAATACGATAATTTAC
GATACGAAGTACATCTCGACGAGGGAAGAGTTGTTGGGCAAAACCTTGGG
GACGGATACGGGCGTGGAGGGGCTGTATCATACCTTGGTGGTAGAGGAGG
ACAAGAAGGAGAAAGGGGCTGGGATCGCGGGGTATGATGCTTATTTGACG
GGGGCAATTTTTGCGAGAATGCGAGAGTTGTTGAAGGAGGGAGGGAAGGA
GCGGGAGGTGGCCATGAAGGTGTTCAATTACCGGAGTTTGTTCGAGACGA
ATCTCGGGGGAAATGATGAGTTGGTGTACCGGAAGGAGGGGCAGTTGGTG
TTTCATTTGGGGTGGAGGAAGGAGGATGGCACAAGATTGAATGACGATTC
CTTGATGAAAGTATTTGGAGAGCGGGCGGCGAGTGTCTCAATCTTGTGGG
TTGATGACTTGTCGGCGTTTGCTGTCGTAAATGGAGAGGAGGGCTTGAAG
GAGGAAGACGTGATGGGCGGGCTTACGGGGCCGGCAGCGGCCGTCGTGCG
GGTGACGCCTTATAAGAAATGGTTGGAAGGGAAAGAGGCGAAAGAAAGGG
TCGGGAGTGGACGAAGGGATGGAGGGGAAGATGATGATGTGGCGGGAGCG
TTGGCTTGGATCATGAAGAGGACGTTGCGGCTGCTGGGGTTGAAGCCGGG
GGAGAGGGAGGGACAAGTTGGGAAGCGCTTGCGTAGTGCCTAGATGGACG
TGACGAAGGAGAATTTTGCCGAGACCCTGCCCGAGCTCGAGGTGGCACTG
CAGGACTGCGAGTTCGCGACCATCGACTTCGAGATGTCGGGAATCAGTTT
GCCTGGGAATAGCGGTTCTTCCCGCCCTAATTATGGCGACACACCACAGG
AGAGGTATGCCAAAACGTACCCTATCAGCTCTCGTTACAATATCGTGCAG
ATGGGCGTCTGTATTTTTAGCAAAGTGCCAGACGAGAAGACAAAGAGCAA
GAAGGGGGAAGAGGCCAAAAAGGAAACTTTAATCGCACGGCCATTCAATT
TTTACACTTTTGCCGCAGAGGGGGAGGACGTGGTCCTGAGCCTGTCTGCG
ATGCATTTTTTGAAGGACCAAGGGATGGACTTCAATAAATGGGTTCGACA
GGGCGTATCGTACACAAATGAGGCAGGCGAGGCGTATTTGGTGAAGAAAA
TGGAGCAGGAACGGGAGCAGGACCGACAGGACGCCGAGGCAGCTGCAGCA
GCAGCAGCGGGAGGAGGAGAAGCGTCGGAAAAGAGCAGGATAAAGCTGAC
AAGGGCAGCAGATATCGACTTCGTCAAGGCCCAGATGGAGATGGTTACAG
CGTGGGTTAAGACTGAAAAGGTCGAGGGGAGTGGGAAAGGGACAGAGGAG
GAAGTGAGGGAGGCGGCCCGCAGATTCAAGGAGTTGAGCTTGACGCGGAC
GAATGCGTTTTTGCGTCGGGTGTTGTTTGAAGCAATTGGCGCGGCGTATC
CGGAGATAGTGACGGAGGCCAGGAATAACCAGGTGATATTAATGAGGCTG
TCGGAGGCGGAGAAGAAGGAGAGAGACGCTGCCAGGGAGGCGGCGAGGCA
GGCCAAGTTGACCAGTAAGGTGGGCATGCGCCTGGTGTTCAAGGCGATTG
GCGCGTGTGGTAAACCGTTGGTGGTCCACAATGGGATGCACGACTTGCTC
TTCATGATGTCTGCATTCAACAAGCCACTTCCCGAGACCTTGATAGACTT
GAAAGGGCAGCTGTCGGAATGCTTCCCGAATACGATAATTTACGATACGA
AGTACATCTCGACGAGGGAAGAGTTGTTGGGCAAAACCTTGGGGACGGAT
ACGGGCGTGGAGGGGCTGTATCATACCTTGGTGGTAGAGGAGGACAAGAA
GGAGAAAGGGGCTGGGATCGCGGGGTATGATGCTTATTTGACGGGGGCAA
TTTTTGCGAGAATGCGAGAGTTGTTGAAGGAGGGAGGGAAGGAGCGGGAG
GTGGCCATGAAGGTGTTCAATTACCGGAGTTTGTTCGAGACGAATCTCGG
GGGAAATGATGAGTTGGTGTACCGGAAGGAGGGGCAGTTGGTGTTTCATT
TGGGGTGGAGGAAGGAGGATGGCACAAGATTGAATGACGATTCCTTGATG
AAAGTATTTGGAGAGCGGGCGGCGAGTGTCTCAATCTTGTGGGTTGATGA
CTTGTCGGCGTTTGCTGTCGTAAATGGAGAGGAGGGCTTGAAGGAGGAAG
ACGTGATGGGCGGGCTTACGGGGCCGGCAGCGGCCGTCGTGCGGGTGACG
CCTTATAAGAAATGGTTGGAAGGGAAAGAGGCGAAAGAAAGGGTCGGGAG
TGGACGAAGGGATGGAGGGGAAGATGATGATGTGGCGGGAGCGTTGGCTT
GGATCATGAAGAGGACGTTGCGGCTGCTGGGGTTGAAGCCGGGGGAGAGG
GAGGGACAAGTTGGGAAGCGCTTGCGTAGTGCCTAG

Synonyms

Publications