jgi.p|Nanoce1779_2|576133, mRNA_75 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576133
Unique Name	mRNA_75
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1347
Alignment location	scaffold_3:203155..204501 +

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Properties


Property Name	Value
TranscriptId	576219
Track	FilteredModels2
ProteinId	576133

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:203155..204501 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576133	gene_75	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576133	mRNA_75-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_75	CDS_75	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:203155..204501+
coding sequence from alignment at scaffold_3:203155..204501+

mRNA sequence

>mRNA_75 ID=mRNA_75|Name=jgi.p|Nanoce1779_2|576133|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp
GCTGGGAGGGCTGGTAGGGGCAGGGGATAGGAGTGTGCTAGTCGCGCAGC
GGTTGAGGGTGGAGCAGGGGGTAAGTGGTTGCCCGGCAGTTTTGAATGCA
ATGATACACTGTCCTGAGTGCAGTGGGGTGCAATTTGCATGTTGTTACGC
CCTGGCGAATTTAGCAGGGGAATGCCTTGAAAACCAATTATTGTTCTGTG
CAGGCAACGCCGCGCAGGCCGTCTCTCGTGCCCTTGATAAGTTTCCTTAT
GACCCGAAAATCCAAGAATGGGGCGCACGGGCTTATGCTGACTTGATGAA
GGATTGTAATCAGAACCAAATGGCGGTCATGGACGCGGGGGGTTGTAGTA
CGTTGGTGCAGACTTTAGCTTCCTTTCCCAATGTGCCCACAGTGCAATTT
GCGGCTTGCTATGCGATTGTGAATCTGGCAAGTAGCGACGTGCGTGCACG
GATCAAGTTGGGAAATGCGGGGGCGTGCCGTCACATCCTAAAGGGGATGT
CGGGGCCCTGTGCGGTAGACCCGAATGTGGTCGAGTGGGCATGTCGTGCC
TTGGGAGATCTCGCGAGTGGAAACGAGGAGAATCAGGTTAGGATACGATT
GACGGGGGGATGCAAGCAGGTAGTCGCGACCTTGGGTCAGCATTCCCAGA
ACGCTCGCGTCCAATTTGCCGGGTGCTATGCACTGACGCACTTGGTGGCA
GGGAATAAAATGAATCAGCTGCATGTTGCGGAGGCTGGGGGGTGTGAGGC
GATTGTGCGAGCGATCCTGGACTTCGACGAGGGGAGTAGTATAAGGACGT
GGGGTTTCAGAGCATTGGTGGCGATGGCGGCCACAGTGTCGTGTGCAGAC
GGCTTGGCGGAGGTCGGGACGTTGTTTGAGATGGTCAAAGTCATGAAAAT
GAAGGAGAGGGAGGAGGGAAAGGCGGAAGGGGCGGGGGAGAGCGGGGAGA
AGTTGAAGGAAGGAAAGATAGAGAGAGCAATGGCGGCCGTACACGGGGCG
GGAACGAGGGGGCCACAGTAGCCGGTGGACAATAGGGAGAAGCAGGAGCA
GGAGGAGGAAACTGTACATACGCACTGTGCGTGAATGCAAGAAGAAGAAT
AAAAACAAGAGAGAAAAAGCATATTTTGATTGCATGTGATTCAGTGGCGT
TGTTGCGATGCAGTTGTGCTTCTTCATGCGATTCACCGTTGAGTTTGCAC
GGAGTGTGTGATCTTATGATTTAGGTCCTGGGCTGCAGCCGTCATAGGCT
TGAGCCTAGGCAATAATAGATAGACCAGAGGACCACCGTTACAGACGATA
GCACAATCAAATGAAATACAAAGAGAACTAAATAATCGCAAGGTATT

protein sequence of jgi.p|Nanoce1779_2|576133

>mRNA_75-protein ID=mRNA_75-protein|Name=jgi.p|Nanoce1779_2|576133|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MIHCPECSGVQFACCYALANLAGECLENQLLFCAGNAAQAVSRALDKFPY
DPKIQEWGARAYADLMKDCNQNQMAVMDAGGCSTLVQTLASFPNVPTVQF
AACYAIVNLASSDVRARIKLGNAGACRHILKGMSGPCAVDPNVVEWACRA
LGDLASGNEENQVRIRLTGGCKQVVATLGQHSQNARVQFAGCYALTHLVA
GNKMNQLHVAEAGGCEAIVRAILDFDEGSSIRTWGFRALVAMAATVSCAD
GLAEVGTLFEMVKVMKMKEREEGKAEGAGESGEKLKEGKIERAMAAVHGA
GTRGPQ*

mRNA from alignment at scaffold_3:203155..204501+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_75 ID=mRNA_75|Name=jgi.p|Nanoce1779_2|576133|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp|location=Sequence derived from alignment at scaffold_3:203155..204501+ (Nannochloropsis oceanica)
GCTGGGAGGGCTGGTAGGGGCAGGGGATAGGAGTGTGCTAGTCGCGCAGC
GGTTGAGGGTGGAGCAGGGGGTAAGTGGTTGCCCGGCAGTTTTGAATGCA
ATGATACACTGTCCTGAGTGCAGTGGGGTGCAATTTGCATGTTGTTACGC
CCTGGCGAATTTAGCAGGGGAATGCCTTGAAAACCAATTATTGTTCTGTG
CAGGCAACGCCGCGCAGGCCGTCTCTCGTGCCCTTGATAAGTTTCCTTAT
GACCCGAAAATCCAAGAATGGGGCGCACGGGCTTATGCTGACTTGATGAA
GGATTGTAATCAGAACCAAATGGCGGTCATGGACGCGGGGGGTTGTAGTA
CGTTGGTGCAGACTTTAGCTTCCTTTCCCAATGTGCCCACAGTGCAATTT
GCGGCTTGCTATGCGATTGTGAATCTGGCAAGTAGCGACGTGCGTGCACG
GATCAAGTTGGGAAATGCGGGGGCGTGCCGTCACATCCTAAAGGGGATGT
CGGGGCCCTGTGCGGTAGACCCGAATGTGGTCGAGTGGGCATGTCGTGCC
TTGGGAGATCTCGCGAGTGGAAACGAGGAGAATCAGGTTAGGATACGATT
GACGGGGGGATGCAAGCAGGTAGTCGCGACCTTGGGTCAGCATTCCCAGA
ACGCTCGCGTCCAATTTGCCGGGTGCTATGCACTGACGCACTTGGTGGCA
GGGAATAAAATGAATCAGCTGCATGTTGCGGAGGCTGGGGGGTGTGAGGC
GATTGTGCGAGCGATCCTGGACTTCGACGAGGGGAGTAGTATAAGGACGT
GGGGTTTCAGAGCATTGGTGGCGATGGCGGCCACAGTGTCGTGTGCAGAC
GGCTTGGCGGAGGTCGGGACGTTGTTTGAGATGGTCAAAGTCATGAAAAT
GAAGGAGAGGGAGGAGGGAAAGGCGGAAGGGGCGGGGGAGAGCGGGGAGA
AGTTGAAGGAAGGAAAGATAGAGAGAGCAATGGCGGCCGTACACGGGGCG
GGAACGAGGGGGCCACAGTAGCCGGTGGACAATAGGGAGAAGCAGGAGCA
GGAGGAGGAAACTGTACATACGCACTGTGCGTGAATGCAAGAAGAAGAAT
AAAAACAAGAGAGAAAAAGCATATTTTGATTGCATGTGATTCAGTGGCGT
TGTTGCGATGCAGTTGTGCTTCTTCATGCGATTCACCGTTGAGTTTGCAC
GGAGTGTGTGATCTTATGATTTAGGTCCTGGGCTGCAGCCGTCATAGGCT
TGAGCCTAGGCAATAATAGATAGACCAGAGGACCACCGTTACAGACGATA
GCACAATCAAATGAAATACAAAGAGAACTAAATAATCGCAAGGTATT

Coding sequence (CDS) from alignment at scaffold_3:203155..204501+

>mRNA_75 ID=mRNA_75|Name=jgi.p|Nanoce1779_2|576133|organism=Nannochloropsis oceanica|type=CDS|length=921bp|location=Sequence derived from alignment at scaffold_3:203155..204501+ (Nannochloropsis oceanica)
ATGATACACTGTCCTGAGTGCAGTGGGGTGCAATTTGCATGTTGTTACGC
CCTGGCGAATTTAGCAGGGGAATGCCTTGAAAACCAATTATTGTTCTGTG
CAGGCAACGCCGCGCAGGCCGTCTCTCGTGCCCTTGATAAGTTTCCTTAT
GACCCGAAAATCCAAGAATGGGGCGCACGGGCTTATGCTGACTTGATGAA
GGATTGTAATCAGAACCAAATGGCGGTCATGGACGCGGGGGGTTGTAGTA
CGTTGGTGCAGACTTTAGCTTCCTTTCCCAATGTGCCCACAGTGCAATTT
GCGGCTTGCTATGCGATTGTGAATCTGGCAAGTAGCGACGTGCGTGCACG
GATCAAGTTGGGAAATGCGGGGGCGTGCCGTCACATCCTAAAGGGGATGT
CGGGGCCCTGTGCGGTAGACCCGAATGTGGTCGAGTGGGCATGTCGTGCC
TTGGGAGATCTCGCGAGTGGAAACGAGGAGAATCAGGTTAGGATACGATT
GACGGGGGGATGCAAGCAGGTAGTCGCGACCTTGGGTCAGCATTCCCAGA
ACGCTCGCGTCCAATTTGCCGGGTGCTATGCACTGACGCACTTGGTGGCA
GGGAATAAAATGAATCAGCTGCATGTTGCGGAGGCTGGGGGGTGTGAGGC
GATTGTGCGAGCGATCCTGGACTTCGACGAGGGGAGTAGTATAAGGACGT
GGGGTTTCAGAGCATTGGTGGCGATGGCGGCCACAGTGTCGTGTGCAGAC
GGCTTGGCGGAGGTCGGGACGTTGTTTGAGATGGTCAAAGTCATGAAAAT
GAAGGAGAGGGAGGAGGGAAAGGCGGAAGGGGCGGGGGAGAGCGGGGAGA
AGTTGAAGGAAGGAAAGATAGAGAGAGCAATGGCGGCCGTACACGGGGCG
GGAACGAGGGGGCCACAGTAG

Synonyms

Publications