jgi.p|Nanoce1779_2|598975, mRNA_7499 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598975
Unique NamemRNA_7499
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length257
Alignment locationscaffold_20:118324..118580 +

Link to JBrowse

Properties
Property NameValue
TranscriptId599061
TrackFilteredModels2
ProteinId598975
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:118324..118580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598975gene_7499Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598975mRNA_7499-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7499CDS_7499Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7499 ID=mRNA_7499|Name=jgi.p|Nanoce1779_2|598975|organism=Nannochloropsis oceanica|type=mRNA|length=257bp
GAGGAAGAGGTGGAGGAAGAGGAGGAAAGAAGTTTGATGTGTGTGGTGTG
CTTGTGTACAGTGGAGGAGGGGGAGGTGGTGAAGGTCTTGCCAAGGTGTG
GGCATGAATTTCATTCCGAAGGATGCGTGGATTTGTGGCTGAAGCTGCAC
AACAGCTGTCCGATCTGCAAGGCAGCTGTCATAGTGGGAGGGAGGGAGGG
AGGGAGTGACGAGGAGGTTTAGATCTTTGTGGGCCCCGGGTCTAAGATGG
CAGGACC
back to top

protein sequence of jgi.p|Nanoce1779_2|598975

>mRNA_7499-protein ID=mRNA_7499-protein|Name=jgi.p|Nanoce1779_2|598975|organism=Nannochloropsis oceanica|type=polypeptide|length=62bp
MCVVCLCTVEEGEVVKVLPRCGHEFHSEGCVDLWLKLHNSCPICKAAVIV
GGREGGSDEEV*
back to top

mRNA from alignment at scaffold_20:118324..118580+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7499 ID=mRNA_7499|Name=jgi.p|Nanoce1779_2|598975|organism=Nannochloropsis oceanica|type=mRNA|length=257bp|location=Sequence derived from alignment at scaffold_20:118324..118580+ (Nannochloropsis oceanica)
GAGGAAGAGGTGGAGGAAGAGGAGGAAAGAAGTTTGATGTGTGTGGTGTG
CTTGTGTACAGTGGAGGAGGGGGAGGTGGTGAAGGTCTTGCCAAGGTGTG
GGCATGAATTTCATTCCGAAGGATGCGTGGATTTGTGGCTGAAGCTGCAC
AACAGCTGTCCGATCTGCAAGGCAGCTGTCATAGTGGGAGGGAGGGAGGG
AGGGAGTGACGAGGAGGTTTAGATCTTTGTGGGCCCCGGGTCTAAGATGG
CAGGACC
back to top

Coding sequence (CDS) from alignment at scaffold_20:118324..118580+

>mRNA_7499 ID=mRNA_7499|Name=jgi.p|Nanoce1779_2|598975|organism=Nannochloropsis oceanica|type=CDS|length=186bp|location=Sequence derived from alignment at scaffold_20:118324..118580+ (Nannochloropsis oceanica)
ATGTGTGTGGTGTGCTTGTGTACAGTGGAGGAGGGGGAGGTGGTGAAGGT
CTTGCCAAGGTGTGGGCATGAATTTCATTCCGAAGGATGCGTGGATTTGT
GGCTGAAGCTGCACAACAGCTGTCCGATCTGCAAGGCAGCTGTCATAGTG
GGAGGGAGGGAGGGAGGGAGTGACGAGGAGGTTTAG
back to top
Synonyms
Publications