jgi.p|Nanoce1779_2|598966, mRNA_7497 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598966
Unique NamemRNA_7497
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length546
Alignment locationscaffold_20:110659..111204 +

Link to JBrowse

Properties
Property NameValue
TranscriptId599052
TrackFilteredModels2
ProteinId598966
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:110659..111204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598966gene_7497Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598966mRNA_7497-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7497CDS_7497Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7497 ID=mRNA_7497|Name=jgi.p|Nanoce1779_2|598966|organism=Nannochloropsis oceanica|type=mRNA|length=546bp
AGAAGAGGGGGGGCTTGGAAGCATGTGTGCTACCGAAGGACCTAGAGGAG
GGGGAGGAAGGGAGGGAGGAAGGGGGGGAGGGAGGGTTGCGGGTGGCGTG
GAATATCCTAGCTGGGTATGTTGCCTCGATGGACGAGCTCATGACCCTCT
CCGTCCTTCCCGCCCCCCTTCCTCCCGCCCTTCCTCCTCCTTCCCCTTCT
TTTCCCCCAACGGCCACAACGGCCACAACGGCCCCTCCCCTCATTACTTC
CACTGCCATGACTTCTTCCTCTCCCCCGCCCTCCCCTTTTCCTCCAACAC
CTCGGGTGAGCACTGCTCCTCCCTCCCTCCCTCTGTTGCCCAGTCGACCT
CCTGTGGATGCAGGTACCAAGGAGGAAGAGGGGGAGGGCCGGAGGGAGGA
GAAGGGCTGAGGGAGGGGGGGGGCGGCTGGCAAGGTCTCCAGTCATCCTA
CTTCAGAAGAGGGAGGGAGGGAGAGAGGGGTCATTAGGCATGAAGCAGTC
GATGAAGGAAGGTGAATGTGTGAATGTGTGTGTGTAGTTGTGTGAA
back to top

protein sequence of jgi.p|Nanoce1779_2|598966

>mRNA_7497-protein ID=mRNA_7497-protein|Name=jgi.p|Nanoce1779_2|598966|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MCATEGPRGGGGREGGRGGGRVAGGVEYPSWVCCLDGRAHDPLRPSRPPS
SRPSSSFPFFSPNGHNGHNGPSPHYFHCHDFFLSPALPFSSNTSGEHCSS
LPPSVAQSTSCGCRYQGGRGGGPEGGEGLREGGGGWQGLQSSYFRRGREG
ERGH*
back to top

mRNA from alignment at scaffold_20:110659..111204+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7497 ID=mRNA_7497|Name=jgi.p|Nanoce1779_2|598966|organism=Nannochloropsis oceanica|type=mRNA|length=546bp|location=Sequence derived from alignment at scaffold_20:110659..111204+ (Nannochloropsis oceanica)
AGAAGAGGGGGGGCTTGGAAGCATGTGTGCTACCGAAGGACCTAGAGGAG
GGGGAGGAAGGGAGGGAGGAAGGGGGGGAGGGAGGGTTGCGGGTGGCGTG
GAATATCCTAGCTGGGTATGTTGCCTCGATGGACGAGCTCATGACCCTCT
CCGTCCTTCCCGCCCCCCTTCCTCCCGCCCTTCCTCCTCCTTCCCCTTCT
TTTCCCCCAACGGCCACAACGGCCACAACGGCCCCTCCCCTCATTACTTC
CACTGCCATGACTTCTTCCTCTCCCCCGCCCTCCCCTTTTCCTCCAACAC
CTCGGGTGAGCACTGCTCCTCCCTCCCTCCCTCTGTTGCCCAGTCGACCT
CCTGTGGATGCAGGTACCAAGGAGGAAGAGGGGGAGGGCCGGAGGGAGGA
GAAGGGCTGAGGGAGGGGGGGGGCGGCTGGCAAGGTCTCCAGTCATCCTA
CTTCAGAAGAGGGAGGGAGGGAGAGAGGGGTCATTAGGCATGAAGCAGTC
GATGAAGGAAGGTGAATGTGTGAATGTGTGTGTGTAGTTGTGTGAA
back to top

Coding sequence (CDS) from alignment at scaffold_20:110659..111204+

>mRNA_7497 ID=mRNA_7497|Name=jgi.p|Nanoce1779_2|598966|organism=Nannochloropsis oceanica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_20:110659..111204+ (Nannochloropsis oceanica)
ATGTGTGCTACCGAAGGACCTAGAGGAGGGGGAGGAAGGGAGGGAGGAAG
GGGGGGAGGGAGGGTTGCGGGTGGCGTGGAATATCCTAGCTGGGTATGTT
GCCTCGATGGACGAGCTCATGACCCTCTCCGTCCTTCCCGCCCCCCTTCC
TCCCGCCCTTCCTCCTCCTTCCCCTTCTTTTCCCCCAACGGCCACAACGG
CCACAACGGCCCCTCCCCTCATTACTTCCACTGCCATGACTTCTTCCTCT
CCCCCGCCCTCCCCTTTTCCTCCAACACCTCGGGTGAGCACTGCTCCTCC
CTCCCTCCCTCTGTTGCCCAGTCGACCTCCTGTGGATGCAGGTACCAAGG
AGGAAGAGGGGGAGGGCCGGAGGGAGGAGAAGGGCTGAGGGAGGGGGGGG
GCGGCTGGCAAGGTCTCCAGTCATCCTACTTCAGAAGAGGGAGGGAGGGA
GAGAGGGGTCATTAG
back to top
Synonyms
Publications