jgi.p|Nanoce1779_2|598964, mRNA_7496 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598964
Unique NamemRNA_7496
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length264
Alignment locationscaffold_20:108059..108322 -

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Properties
Property NameValue
TranscriptId599050
TrackFilteredModels2
ProteinId598964
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:108059..108322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598964gene_7496Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598964mRNA_7496-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7496CDS_7496Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7496 ID=mRNA_7496|Name=jgi.p|Nanoce1779_2|598964|organism=Nannochloropsis oceanica|type=mRNA|length=264bp
AACACGACCGGAGAAAGCGTGGGGATAATGACGCTGCTGCTGCTGTTGCT
GGTGCTGGTGCTGGTGCTGCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGA
CCGGCATACCCACACATAGAAGGAGACGACGAGGCCCAATCATCGCCAGG
CGGTTGCTGCTGCTGCACAAATTGTTCCTCTCTCCCTCCCTCCATCCCTC
CTTCCAACGACTCCAAATAACGTTTGAAGTAACGGAATCCCGTTTTTAGC
GTACAGCTAGTACT
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protein sequence of jgi.p|Nanoce1779_2|598964

>mRNA_7496-protein ID=mRNA_7496-protein|Name=jgi.p|Nanoce1779_2|598964|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MTLLLLLLVLVLVLLLLLLLLLLLTGIPTHRRRRRGPIIARRLLLLHKLF
LSPSLHPSFQRLQITFEVTESRF*
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mRNA from alignment at scaffold_20:108059..108322-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7496 ID=mRNA_7496|Name=jgi.p|Nanoce1779_2|598964|organism=Nannochloropsis oceanica|type=mRNA|length=264bp|location=Sequence derived from alignment at scaffold_20:108059..108322- (Nannochloropsis oceanica)
AACACGACCGGAGAAAGCGTGGGGATAATGACGCTGCTGCTGCTGTTGCT
GGTGCTGGTGCTGGTGCTGCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGA
CCGGCATACCCACACATAGAAGGAGACGACGAGGCCCAATCATCGCCAGG
CGGTTGCTGCTGCTGCACAAATTGTTCCTCTCTCCCTCCCTCCATCCCTC
CTTCCAACGACTCCAAATAACGTTTGAAGTAACGGAATCCCGTTTTTAGC
GTACAGCTAGTACT
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Coding sequence (CDS) from alignment at scaffold_20:108059..108322-

>mRNA_7496 ID=mRNA_7496|Name=jgi.p|Nanoce1779_2|598964|organism=Nannochloropsis oceanica|type=CDS|length=222bp|location=Sequence derived from alignment at scaffold_20:108059..108322- (Nannochloropsis oceanica)
ATGACGCTGCTGCTGCTGTTGCTGGTGCTGGTGCTGGTGCTGCTCCTGCT
GCTGCTGCTGCTGCTGCTGCTGACCGGCATACCCACACATAGAAGGAGAC
GACGAGGCCCAATCATCGCCAGGCGGTTGCTGCTGCTGCACAAATTGTTC
CTCTCTCCCTCCCTCCATCCCTCCTTCCAACGACTCCAAATAACGTTTGA
AGTAACGGAATCCCGTTTTTAG
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Synonyms
Publications