jgi.p|Nanoce1779_2|598945, mRNA_7493 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598945
Unique NamemRNA_7493
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length920
Alignment locationscaffold_20:95390..96309 -

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Properties
Property NameValue
TranscriptId599031
TrackFilteredModels2
ProteinId598945
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:95390..96309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598945gene_7493Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598945mRNA_7493-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7493CDS_7493Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7493 ID=mRNA_7493|Name=jgi.p|Nanoce1779_2|598945|organism=Nannochloropsis oceanica|type=mRNA|length=920bp
CACGATCGACAAGACAATCTTGTATCGAATCCCGCTCACAACCTGGCTCG
TTGCACTCAGGATAGCCCCCAAATTCAAGTTGTTGCTTTCTTCCGCCGAT
CCAAGGTCACCTCGTGCCTTCATTAACTTCACCCCGGCCTTGGCCGCGGC
CACAACCTCCGGGTCGCTTACGTCCACGTTCTGAGGACACCCAGGACAAT
TCCCCTGTCGTGGCACTTTACCACCGCTTGCTTCTGCTGCCGCGGGCAAG
GCATTGCGTCCCTCCGGCAGCTGCTGCGGCTGCTGAGAAGCATGCAGGCT
GCCTTCAGGGCGCAACAGGTCGTCCTCCCCCATGATGGCAACCCTCTCCC
CCAACTCCCGCGTCGCTTCCGCTGCTTTACGAGCACCTGATCGTCTCATA
ATGTCGTTTCCAAAAGTCTCATCGCTTGCCTTCATGCTGTCCTCCGGCAC
ACACACTCCTCGCGGAGCCCGCCCCAAGGAGTGATGGACCAAATCGGCCA
ACTTGGACGACAACATCGGGCTTCCTACCCCTTTCTCCATCCCTTCTTCT
CCCTCTTCCTCCACCTGCTCTTTGGCCAGGTCGGAAATGGGGCGGCACAC
CAAACCGGGGGCGCAAGAGCCAAATTGTCCACAGGGACCACCGCAGTCCG
CGCCTTCAGGTTGGTTGAGCGGGCCTTGCATCCCCTCAGGACAGACGAGG
GCGTTCATTCCCGAGGTAGGACGAGTGTAAAGGAGGAGAAGGTTGGAGAC
AAGGAAAAGGAATGGAAGGGGGAGGACGGAGCGGTAATGTTGGCGGGCAG
GCATGCTTATGCTACGGGCTGCCTTGACTGAGGGATGGGCGTGCAGGCGA
GGCGAGGGGACGAAGGTTACAAAGGCGACGACGACAACGACGGTGCTCCA
CGCGGCTTTGCCACAGCGCT
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protein sequence of jgi.p|Nanoce1779_2|598945

>mRNA_7493-protein ID=mRNA_7493-protein|Name=jgi.p|Nanoce1779_2|598945|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MDQIGQLGRQHRASYPFLHPFFSLFLHLLFGQVGNGAAHQTGGARAKLST
GTTAVRAFRLVERALHPLRTDEGVHSRGRTSVKEEKVGDKEKEWKGEDGA
VMLAGRHAYATGCL
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mRNA from alignment at scaffold_20:95390..96309-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7493 ID=mRNA_7493|Name=jgi.p|Nanoce1779_2|598945|organism=Nannochloropsis oceanica|type=mRNA|length=920bp|location=Sequence derived from alignment at scaffold_20:95390..96309- (Nannochloropsis oceanica)
CACGATCGACAAGACAATCTTGTATCGAATCCCGCTCACAACCTGGCTCG
TTGCACTCAGGATAGCCCCCAAATTCAAGTTGTTGCTTTCTTCCGCCGAT
CCAAGGTCACCTCGTGCCTTCATTAACTTCACCCCGGCCTTGGCCGCGGC
CACAACCTCCGGGTCGCTTACGTCCACGTTCTGAGGACACCCAGGACAAT
TCCCCTGTCGTGGCACTTTACCACCGCTTGCTTCTGCTGCCGCGGGCAAG
GCATTGCGTCCCTCCGGCAGCTGCTGCGGCTGCTGAGAAGCATGCAGGCT
GCCTTCAGGGCGCAACAGGTCGTCCTCCCCCATGATGGCAACCCTCTCCC
CCAACTCCCGCGTCGCTTCCGCTGCTTTACGAGCACCTGATCGTCTCATA
ATGTCGTTTCCAAAAGTCTCATCGCTTGCCTTCATGCTGTCCTCCGGCAC
ACACACTCCTCGCGGAGCCCGCCCCAAGGAGTGATGGACCAAATCGGCCA
ACTTGGACGACAACATCGGGCTTCCTACCCCTTTCTCCATCCCTTCTTCT
CCCTCTTCCTCCACCTGCTCTTTGGCCAGGTCGGAAATGGGGCGGCACAC
CAAACCGGGGGCGCAAGAGCCAAATTGTCCACAGGGACCACCGCAGTCCG
CGCCTTCAGGTTGGTTGAGCGGGCCTTGCATCCCCTCAGGACAGACGAGG
GCGTTCATTCCCGAGGTAGGACGAGTGTAAAGGAGGAGAAGGTTGGAGAC
AAGGAAAAGGAATGGAAGGGGGAGGACGGAGCGGTAATGTTGGCGGGCAG
GCATGCTTATGCTACGGGCTGCCTTGACTGAGGGATGGGCGTGCAGGCGA
GGCGAGGGGACGAAGGTTACAAAGGCGACGACGACAACGACGGTGCTCCA
CGCGGCTTTGCCACAGCGCT
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Coding sequence (CDS) from alignment at scaffold_20:95390..96309-

>mRNA_7493 ID=mRNA_7493|Name=jgi.p|Nanoce1779_2|598945|organism=Nannochloropsis oceanica|type=CDS|length=344bp|location=Sequence derived from alignment at scaffold_20:95390..96309- (Nannochloropsis oceanica)
ATGGACCAAATCGGCCAACTTGGACGACAACATCGGGCTTCCTACCCCTT
TCTCCATCCCTTCTTCTCCCTCTTCCTCCACCTGCTCTTTGGCCAGGTCG
GAAATGGGGCGGCACACCAAACCGGGGGCGCAAGAGCCAAATTGTCCACA
GGGACCACCGCAGTCCGCGCCTTCAGGTTGGTTGAGCGGGCCTTGCATCC
CCTCAGGACAGACGAGGGCGTTCATTCCCGAGGTAGGACGAGTGTAAAGG
AGGAGAAGGTTGGAGACAAGGAAAAGGAATGGAAGGGGGAGGACGGAGCG
GTAATGTTGGCGGGCAGGCATGCTTATGCTACGGGCTGCCTTGA
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Synonyms
Publications