jgi.p|Nanoce1779_2|567905, mRNA_7492 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|567905
Unique Name	mRNA_7492
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	762
Alignment location	scaffold_20:93445..94206 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	567991
Track	FilteredModels2
ProteinId	567905

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:93445..94206 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|567905	gene_7492	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|567905	mRNA_7492-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7492	CDS_7492	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:93445..94206+
coding sequence from alignment at scaffold_20:93445..94206+

mRNA sequence

>mRNA_7492 ID=mRNA_7492|Name=jgi.p|Nanoce1779_2|567905|organism=Nannochloropsis oceanica|type=mRNA|length=762bp
ATGGACTTCCAATATGATGGGAGCAAGATACTCGATTACCTGTATGTGGG
TGGGGAGCACATTCCGAGCCAGGATGCCCTTGCGGAGACCTTCAACATAA
CCCACATCGTCAACACGACCATGAAGGATTACTACCCTCACCATCCGTAC
GGGCAGGGGGACTATTGCCAGCTGTATTTGCTGGACTCCTTGTCGGAGGA
GCTGACAAACGAGAAGTTGGAGACTGCCTTCGACATGGTGGAGAGGGCGA
GGGCAGGGGGGCATGCCTGCCTGGTACACTGCCGGAACGGAATGAGTCGA
TCGACGTCGGTAGTCATTGCATATCTAATGAAGTACTACAAGATGCCCTT
GTTGGAGGCCTTTAGTTTTGTGCGGGAACGGAGGCCATGCACGAGTCCGA
ACCCGTCCTTCATGCGTCAGCTGGCAAGGTTGGAAAGGGAGTGGAACGGA
GGGGGGCGAAACTCTCTGGATGTCGAGCATTACGCCGACGACCGGTTTGC
ATGTATACGAAAGTTGGCGGTAAAAGATGAGGAAGAGGAGGAGGAGGAGG
AGGAGGAGGAGGATGAAGGAGAAAATGAGAGAGGGAAGGAGGGGGAAGGG
TTGGGTTTGGATGTAGAGTGTGAGAAGGAGGAGGAAGTGGAGGATGTGGG
GTGTCCACTTTCGTCGGGGGATAAGTGCTCGAGGGGAAATGTAAATGAAG
GAGAGGTGGAGGTGGAGAGATGGAGGATAGAGGATGGGAGGGGAAGGAAA
AGAGCTGAATGA

protein sequence of jgi.p|Nanoce1779_2|567905

>mRNA_7492-protein ID=mRNA_7492-protein|Name=jgi.p|Nanoce1779_2|567905|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MDFQYDGSKILDYLYVGGEHIPSQDALAETFNITHIVNTTMKDYYPHHPY
GQGDYCQLYLLDSLSEELTNEKLETAFDMVERARAGGHACLVHCRNGMSR
STSVVIAYLMKYYKMPLLEAFSFVRERRPCTSPNPSFMRQLARLEREWNG
GGRNSLDVEHYADDRFACIRKLAVKDEEEEEEEEEEEDEGENERGKEGEG
LGLDVECEKEEEVEDVGCPLSSGDKCSRGNVNEGEVEVERWRIEDGRGRK
RAE*

mRNA from alignment at scaffold_20:93445..94206+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7492 ID=mRNA_7492|Name=jgi.p|Nanoce1779_2|567905|organism=Nannochloropsis oceanica|type=mRNA|length=762bp|location=Sequence derived from alignment at scaffold_20:93445..94206+ (Nannochloropsis oceanica)
ATGGACTTCCAATATGATGGGAGCAAGATACTCGATTACCTGTATGTGGG
TGGGGAGCACATTCCGAGCCAGGATGCCCTTGCGGAGACCTTCAACATAA
CCCACATCGTCAACACGACCATGAAGGATTACTACCCTCACCATCCGTAC
GGGCAGGGGGACTATTGCCAGCTGTATTTGCTGGACTCCTTGTCGGAGGA
GCTGACAAACGAGAAGTTGGAGACTGCCTTCGACATGGTGGAGAGGGCGA
GGGCAGGGGGGCATGCCTGCCTGGTACACTGCCGGAACGGAATGAGTCGA
TCGACGTCGGTAGTCATTGCATATCTAATGAAGTACTACAAGATGCCCTT
GTTGGAGGCCTTTAGTTTTGTGCGGGAACGGAGGCCATGCACGAGTCCGA
ACCCGTCCTTCATGCGTCAGCTGGCAAGGTTGGAAAGGGAGTGGAACGGA
GGGGGGCGAAACTCTCTGGATGTCGAGCATTACGCCGACGACCGGTTTGC
ATGTATACGAAAGTTGGCGGTAAAAGATGAGGAAGAGGAGGAGGAGGAGG
AGGAGGAGGAGGATGAAGGAGAAAATGAGAGAGGGAAGGAGGGGGAAGGG
TTGGGTTTGGATGTAGAGTGTGAGAAGGAGGAGGAAGTGGAGGATGTGGG
GTGTCCACTTTCGTCGGGGGATAAGTGCTCGAGGGGAAATGTAAATGAAG
GAGAGGTGGAGGTGGAGAGATGGAGGATAGAGGATGGGAGGGGAAGGAAA
AGAGCTGAATGA

Coding sequence (CDS) from alignment at scaffold_20:93445..94206+

>mRNA_7492 ID=mRNA_7492|Name=jgi.p|Nanoce1779_2|567905|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at scaffold_20:93445..94206+ (Nannochloropsis oceanica)
ATGGACTTCCAATATGATGGGAGCAAGATACTCGATTACCTGTATGTGGG
TGGGGAGCACATTCCGAGCCAGGATGCCCTTGCGGAGACCTTCAACATAA
CCCACATCGTCAACACGACCATGAAGGATTACTACCCTCACCATCCGTAC
GGGCAGGGGGACTATTGCCAGCTGTATTTGCTGGACTCCTTGTCGGAGGA
GCTGACAAACGAGAAGTTGGAGACTGCCTTCGACATGGTGGAGAGGGCGA
GGGCAGGGGGGCATGCCTGCCTGGTACACTGCCGGAACGGAATGAGTCGA
TCGACGTCGGTAGTCATTGCATATCTAATGAAGTACTACAAGATGCCCTT
GTTGGAGGCCTTTAGTTTTGTGCGGGAACGGAGGCCATGCACGAGTCCGA
ACCCGTCCTTCATGCGTCAGCTGGCAAGGTTGGAAAGGGAGTGGAACGGA
GGGGGGCGAAACTCTCTGGATGTCGAGCATTACGCCGACGACCGGTTTGC
ATGTATACGAAAGTTGGCGGTAAAAGATGAGGAAGAGGAGGAGGAGGAGG
AGGAGGAGGAGGATGAAGGAGAAAATGAGAGAGGGAAGGAGGGGGAAGGG
TTGGGTTTGGATGTAGAGTGTGAGAAGGAGGAGGAAGTGGAGGATGTGGG
GTGTCCACTTTCGTCGGGGGATAAGTGCTCGAGGGGAAATGTAAATGAAG
GAGAGGTGGAGGTGGAGAGATGGAGGATAGAGGATGGGAGGGGAAGGAAA
AGAGCTGAATGA

Synonyms

Publications