jgi.p|Nanoce1779_2|653766, mRNA_7490 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|653766
Unique NamemRNA_7490
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length720
Alignment locationscaffold_20:91636..92355 -

Link to JBrowse

Properties
Property NameValue
TranscriptId653852
TrackFilteredModels2
ProteinId653766
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:91636..92355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|653766gene_7490Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|653766mRNA_7490-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7490CDS_7490Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7490 ID=mRNA_7490|Name=jgi.p|Nanoce1779_2|653766|organism=Nannochloropsis oceanica|type=mRNA|length=720bp
ATGATGTTAATGTGCTTGCTGCTGGTTGGGGTGTTCGTTTTGCTACAGCT
CCTGTTGATTGTAATTAGAGCCGGGGTAACCCAGTACCGATCGAGACCGA
AGACCAGGACGACAGAGGCACGACGGTCCTTTTTGGGAAAGGGGCAAGCG
GCGGATGCGGCAGAGGCAGTTTCGTGCCCTGTGAACGTCGTAAATGACGT
GGGGAGGAAAGGAGTGGTGGAGGGTTTGGACATGATTAATGGGACAGGCA
TTGAATGTTCAGCAAAAGTAGCCCTCGTGGAGGATTTTTCTCTGCTGCTG
CAAGCGTACGGCAAGCTGGGTTGGGGCTTGATCTGCCCTTGCACCGCGAC
TGCTGCTCATGCATTTTGGAGTGCTTTAATATCTGCGAAAAACCATTAAC
GTGCGGCAATGTCCAATACGCAAATATAAGGTGGCACGCATGTGTGTCCT
TGACACTGTGTGGGAGAATCGAGTGGCGATCGCAAAGTTGTTGTGATGAC
GAGGGCCTCCCGTCAAAGAGGCCCGTCTCAAGCCCACAAATCGTTAAGAG
GGGGACTGGTTGAGAAGCTTTTCATTCGTGGTCACCCTGACCACAAGAAG
CGTTGCTGTAAAGCTGCCACACAAGCCCGTATCCTCCGCAAGCCACTTGA
CAACTGAAAGAACAATCCTGGGGTCTTATATCAAAAACCATTTGTCGGGT
TCGGCGGTCGGCGTGGCCGC
back to top

protein sequence of jgi.p|Nanoce1779_2|653766

>mRNA_7490-protein ID=mRNA_7490-protein|Name=jgi.p|Nanoce1779_2|653766|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MMLMCLLLVGVFVLLQLLLIVIRAGVTQYRSRPKTRTTEARRSFLGKGQA
ADAAEAVSCPVNVVNDVGRKGVVEGLDMINGTGIECSAKVALVEDFSLLL
QAYGKLGWGLICPCTATAAHAFWSALISAKNH*
back to top

mRNA from alignment at scaffold_20:91636..92355-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7490 ID=mRNA_7490|Name=jgi.p|Nanoce1779_2|653766|organism=Nannochloropsis oceanica|type=mRNA|length=720bp|location=Sequence derived from alignment at scaffold_20:91636..92355- (Nannochloropsis oceanica)
ATGATGTTAATGTGCTTGCTGCTGGTTGGGGTGTTCGTTTTGCTACAGCT
CCTGTTGATTGTAATTAGAGCCGGGGTAACCCAGTACCGATCGAGACCGA
AGACCAGGACGACAGAGGCACGACGGTCCTTTTTGGGAAAGGGGCAAGCG
GCGGATGCGGCAGAGGCAGTTTCGTGCCCTGTGAACGTCGTAAATGACGT
GGGGAGGAAAGGAGTGGTGGAGGGTTTGGACATGATTAATGGGACAGGCA
TTGAATGTTCAGCAAAAGTAGCCCTCGTGGAGGATTTTTCTCTGCTGCTG
CAAGCGTACGGCAAGCTGGGTTGGGGCTTGATCTGCCCTTGCACCGCGAC
TGCTGCTCATGCATTTTGGAGTGCTTTAATATCTGCGAAAAACCATTAAC
GTGCGGCAATGTCCAATACGCAAATATAAGGTGGCACGCATGTGTGTCCT
TGACACTGTGTGGGAGAATCGAGTGGCGATCGCAAAGTTGTTGTGATGAC
GAGGGCCTCCCGTCAAAGAGGCCCGTCTCAAGCCCACAAATCGTTAAGAG
GGGGACTGGTTGAGAAGCTTTTCATTCGTGGTCACCCTGACCACAAGAAG
CGTTGCTGTAAAGCTGCCACACAAGCCCGTATCCTCCGCAAGCCACTTGA
CAACTGAAAGAACAATCCTGGGGTCTTATATCAAAAACCATTTGTCGGGT
TCGGCGGTCGGCGTGGCCGC
back to top

Coding sequence (CDS) from alignment at scaffold_20:91636..92355-

>mRNA_7490 ID=mRNA_7490|Name=jgi.p|Nanoce1779_2|653766|organism=Nannochloropsis oceanica|type=CDS|length=399bp|location=Sequence derived from alignment at scaffold_20:91636..92355- (Nannochloropsis oceanica)
ATGATGTTAATGTGCTTGCTGCTGGTTGGGGTGTTCGTTTTGCTACAGCT
CCTGTTGATTGTAATTAGAGCCGGGGTAACCCAGTACCGATCGAGACCGA
AGACCAGGACGACAGAGGCACGACGGTCCTTTTTGGGAAAGGGGCAAGCG
GCGGATGCGGCAGAGGCAGTTTCGTGCCCTGTGAACGTCGTAAATGACGT
GGGGAGGAAAGGAGTGGTGGAGGGTTTGGACATGATTAATGGGACAGGCA
TTGAATGTTCAGCAAAAGTAGCCCTCGTGGAGGATTTTTCTCTGCTGCTG
CAAGCGTACGGCAAGCTGGGTTGGGGCTTGATCTGCCCTTGCACCGCGAC
TGCTGCTCATGCATTTTGGAGTGCTTTAATATCTGCGAAAAACCATTAA
back to top
Synonyms
Publications