jgi.p|Nanoce1779_2|574007, mRNA_749 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574007
Unique NamemRNA_749
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length684
Alignment locationscaffold_2:350200..350883 -

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Properties
Property NameValue
TranscriptId574093
TrackFilteredModels2
ProteinId574007
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:350200..350883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574007gene_749Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574007mRNA_749-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_749CDS_749Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_749 ID=mRNA_749|Name=jgi.p|Nanoce1779_2|574007|organism=Nannochloropsis oceanica|type=mRNA|length=684bp
CGTGAAAACCAGAGACCCCTCACGTGGTAATGGTATGCCCTGTATGGCTC
AGTCTTAATGTCGTGTCATTACGTGCAACTAGTGGTTGTCAATAATGTCC
TCCATAGATGTTATCATAGTTTACCTCACAATAAATAGTGTCGATGTTTT
TCTCTCACTGGCGGCCACCAGCCGGTTGCCAGGCCACACACACCTCTACG
CAAAAAACATAACCAAAGCTGCACAAAGGCAGCGCTGTAGCATACACACC
TCGTCCTCGAATGCCAGGGCGCTCGTCTTTATCTCTTTCAGGATAGGTGC
AATAATTATTATCACATTGTATAATTATATGTTAAATTAATACGCTCCGT
AATGAAGGAAGGTCAATCAGGACTACCTCCTCCCTCAACCCACACACTAC
ACCCCACACAGCGCAGCGGTCATTGCCATCATCACGACCATCAAAAGGGT
TGGGAATATGAAGGGAAAACAGATGCGACGCCGACGTGCAGGTAAGGCGC
CATCTAAGGTCATGATAATTATCATCATCTGACGGGTTCACAGGGGTAGG
AGAGTCACCTTGTCCGTCTGTGTGTGATTTGGTCTTGCTTCACCCCACAC
CCAGGCCTCCATTTGTATACGCAACACTTACACTTCTCTCATGCACCGTA
AATCAAAATCACAGATAGCTCTGATGAGGAGGAA
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protein sequence of jgi.p|Nanoce1779_2|574007

>mRNA_749-protein ID=mRNA_749-protein|Name=jgi.p|Nanoce1779_2|574007|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MSSIDVIIVYLTINSVDVFLSLAATSRLPGHTHLYAKNITKAAQRQRCSI
HTSSSNARALVFISFRIGAIIIITLYNYML
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mRNA from alignment at scaffold_2:350200..350883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_749 ID=mRNA_749|Name=jgi.p|Nanoce1779_2|574007|organism=Nannochloropsis oceanica|type=mRNA|length=684bp|location=Sequence derived from alignment at scaffold_2:350200..350883- (Nannochloropsis oceanica)
CGTGAAAACCAGAGACCCCTCACGTGGTAATGGTATGCCCTGTATGGCTC
AGTCTTAATGTCGTGTCATTACGTGCAACTAGTGGTTGTCAATAATGTCC
TCCATAGATGTTATCATAGTTTACCTCACAATAAATAGTGTCGATGTTTT
TCTCTCACTGGCGGCCACCAGCCGGTTGCCAGGCCACACACACCTCTACG
CAAAAAACATAACCAAAGCTGCACAAAGGCAGCGCTGTAGCATACACACC
TCGTCCTCGAATGCCAGGGCGCTCGTCTTTATCTCTTTCAGGATAGGTGC
AATAATTATTATCACATTGTATAATTATATGTTAAATTAATACGCTCCGT
AATGAAGGAAGGTCAATCAGGACTACCTCCTCCCTCAACCCACACACTAC
ACCCCACACAGCGCAGCGGTCATTGCCATCATCACGACCATCAAAAGGGT
TGGGAATATGAAGGGAAAACAGATGCGACGCCGACGTGCAGGTAAGGCGC
CATCTAAGGTCATGATAATTATCATCATCTGACGGGTTCACAGGGGTAGG
AGAGTCACCTTGTCCGTCTGTGTGTGATTTGGTCTTGCTTCACCCCACAC
CCAGGCCTCCATTTGTATACGCAACACTTACACTTCTCTCATGCACCGTA
AATCAAAATCACAGATAGCTCTGATGAGGAGGAA
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Coding sequence (CDS) from alignment at scaffold_2:350200..350883-

>mRNA_749 ID=mRNA_749|Name=jgi.p|Nanoce1779_2|574007|organism=Nannochloropsis oceanica|type=CDS|length=241bp|location=Sequence derived from alignment at scaffold_2:350200..350883- (Nannochloropsis oceanica)
ATGTCCTCCATAGATGTTATCATAGTTTACCTCACAATAAATAGTGTCGA
TGTTTTTCTCTCACTGGCGGCCACCAGCCGGTTGCCAGGCCACACACACC
TCTACGCAAAAAACATAACCAAAGCTGCACAAAGGCAGCGCTGTAGCATA
CACACCTCGTCCTCGAATGCCAGGGCGCTCGTCTTTATCTCTTTCAGGAT
AGGTGCAATAATTATTATCACATTGTATAATTATATGTTAA
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Synonyms
Publications