jgi.p|Nanoce1779_2|598940, mRNA_7489 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598940
Unique NamemRNA_7489
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length584
Alignment locationscaffold_20:90244..90827 -

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Properties
Property NameValue
TranscriptId599026
TrackFilteredModels2
ProteinId598940
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:90244..90827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598940gene_7489Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598940mRNA_7489-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7489CDS_7489Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7489 ID=mRNA_7489|Name=jgi.p|Nanoce1779_2|598940|organism=Nannochloropsis oceanica|type=mRNA|length=584bp
AACCACAGTTACCATGAGCGGGCAACGACGCAACCGTGGCCCCGCGCACC
AAAACACCTTCGCCTTCAGACACAATCCCAAGTCGAAAAAAACCGAGCGT
ATCCTCGCGTCTCCCATCGAAGGCCTCTGTCAGCGCTGTCACGAAAAAGT
CGAATGGCGCAAAAAATATAGAAAGTACCGTCCCCTCTCCACGCCCGCTA
CCTGCACCTCCTGCCACACTAAGAGCGTGCGTGCTGCCTATCACCAGCTC
TGTGATCCCTGCGCAGCCGAACGAAAGGTCTGTGCGGGCTGCCGTGAACC
CAAATTCATTGTCGTCAAAACAGGGGCGGCGGCGGAGAAGAATTTGGAAG
GGAAGAGGGCGGAGCTCGAGATGGAGGTGAGGGGCATGGGATTGCATTTG
AGGAAGGTACGGAAGATATTGAGGGAGTTTGATCGACTTAACGGGGTGAT
GGATACGAAGGCGGTCGTAGAGGCCGTGGTGAGGGAGGAGGAGGAGGAGG
AAGAAGAGCTTAGCGAGGGGGAGGAGGAGGAAGAGGAAGAAGGGGAGAAG
GAAGGGGAGGAAGATTCTAGTGTAGAGGGGTAGG
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protein sequence of jgi.p|Nanoce1779_2|598940

>mRNA_7489-protein ID=mRNA_7489-protein|Name=jgi.p|Nanoce1779_2|598940|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MSGQRRNRGPAHQNTFAFRHNPKSKKTERILASPIEGLCQRCHEKVEWRK
KYRKYRPLSTPATCTSCHTKSVRAAYHQLCDPCAAERKVCAGCREPKFIV
VKTGAAAEKNLEGKRAELEMEVRGMGLHLRKVRKILREFDRLNGVMDTKA
VVEAVVREEEEEEEELSEGEEEEEEEGEKEGEEDSSVEG*
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mRNA from alignment at scaffold_20:90244..90827-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7489 ID=mRNA_7489|Name=jgi.p|Nanoce1779_2|598940|organism=Nannochloropsis oceanica|type=mRNA|length=584bp|location=Sequence derived from alignment at scaffold_20:90244..90827- (Nannochloropsis oceanica)
AACCACAGTTACCATGAGCGGGCAACGACGCAACCGTGGCCCCGCGCACC
AAAACACCTTCGCCTTCAGACACAATCCCAAGTCGAAAAAAACCGAGCGT
ATCCTCGCGTCTCCCATCGAAGGCCTCTGTCAGCGCTGTCACGAAAAAGT
CGAATGGCGCAAAAAATATAGAAAGTACCGTCCCCTCTCCACGCCCGCTA
CCTGCACCTCCTGCCACACTAAGAGCGTGCGTGCTGCCTATCACCAGCTC
TGTGATCCCTGCGCAGCCGAACGAAAGGTCTGTGCGGGCTGCCGTGAACC
CAAATTCATTGTCGTCAAAACAGGGGCGGCGGCGGAGAAGAATTTGGAAG
GGAAGAGGGCGGAGCTCGAGATGGAGGTGAGGGGCATGGGATTGCATTTG
AGGAAGGTACGGAAGATATTGAGGGAGTTTGATCGACTTAACGGGGTGAT
GGATACGAAGGCGGTCGTAGAGGCCGTGGTGAGGGAGGAGGAGGAGGAGG
AAGAAGAGCTTAGCGAGGGGGAGGAGGAGGAAGAGGAAGAAGGGGAGAAG
GAAGGGGAGGAAGATTCTAGTGTAGAGGGGTAGG
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Coding sequence (CDS) from alignment at scaffold_20:90244..90827-

>mRNA_7489 ID=mRNA_7489|Name=jgi.p|Nanoce1779_2|598940|organism=Nannochloropsis oceanica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_20:90244..90827- (Nannochloropsis oceanica)
ATGAGCGGGCAACGACGCAACCGTGGCCCCGCGCACCAAAACACCTTCGC
CTTCAGACACAATCCCAAGTCGAAAAAAACCGAGCGTATCCTCGCGTCTC
CCATCGAAGGCCTCTGTCAGCGCTGTCACGAAAAAGTCGAATGGCGCAAA
AAATATAGAAAGTACCGTCCCCTCTCCACGCCCGCTACCTGCACCTCCTG
CCACACTAAGAGCGTGCGTGCTGCCTATCACCAGCTCTGTGATCCCTGCG
CAGCCGAACGAAAGGTCTGTGCGGGCTGCCGTGAACCCAAATTCATTGTC
GTCAAAACAGGGGCGGCGGCGGAGAAGAATTTGGAAGGGAAGAGGGCGGA
GCTCGAGATGGAGGTGAGGGGCATGGGATTGCATTTGAGGAAGGTACGGA
AGATATTGAGGGAGTTTGATCGACTTAACGGGGTGATGGATACGAAGGCG
GTCGTAGAGGCCGTGGTGAGGGAGGAGGAGGAGGAGGAAGAAGAGCTTAG
CGAGGGGGAGGAGGAGGAAGAGGAAGAAGGGGAGAAGGAAGGGGAGGAAG
ATTCTAGTGTAGAGGGGTAG
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Synonyms
Publications