jgi.p|Nanoce1779_2|598929, mRNA_7487 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598929
Unique Name	mRNA_7487
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1172
Alignment location	scaffold_20:83499..84966 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599015
Track	FilteredModels2
ProteinId	598929

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:83499..84966 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598929	gene_7487	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598929	mRNA_7487-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7487	CDS_7487	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:83499..84966+
coding sequence from alignment at scaffold_20:83499..84966+

mRNA sequence

>mRNA_7487 ID=mRNA_7487|Name=jgi.p|Nanoce1779_2|598929|organism=Nannochloropsis oceanica|type=mRNA|length=1172bp
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGGCAAAACGAAGGAACGGAAGCCACAAGATGGTACGTGTAAAAAAC
GACACTGTTATATCACGCAGAGGGGGATGAGAGCAATCGAAGAATGAGAG
AGAAATGATAATAAGAAATGCTGTCTACCACGCAGAGGAAAATGAGAGGA
ACCGAAAAAAAAAGAGGAATTACGACCGTACGAATTTATGCATGTATGGG
AACGGGAGAGAGGGGGGGTTTGAAAAACATTCATCTATTTTGAATGAGGA
TTGGGGACTCTATGGAAGGAGAGCAACAGTTTGACTTTGTTTATTGACAA
GGAGAAGAAATGAGGGGAAGAGACGGCACCATCCTCCGTCACTATCTGTC
ACTGCATTCCTTAAATTTCTTGTCGCACCGTTCGAGGAAGCTCCTTTAAT
TTAAAATCTCCTTAGCTCATCATCCTCCTCGCGCGTTCTCTTTCCAAGTC
TATTCTTCTTATCCTGCTCTTCCTCTTCCTCCTCATTCGTTTTCATCATT
ACCTTCAGTGTCTTCTCCTCTCCTTCAATTCCTTCTTCTCGGCCCATTTG
CTTTAATTTTAAAATGCCTTTCTATACATCACATACTTCTGGCTTGCATG
TCTCCCTTTCCTCCTTCTTGTTGCTGTCCTTCTTCAGTATTCTGCTTTCT
TCTTCCATCTTCCACCTGCTTGTCTATGCGTCCATCCCTATACTCCCCTT
CGAGTCATTTCCTCGAATGGCCCCGTCTCCTCCCGCAGATAAATCGACAG
CTATCCTTCGCTCACACAATTACTCCTTCATCACCCCTCTCCCTTGTGGA
TGCCCGTATGTGTGTGTGCGTGTGCTGGATGCGGGCGGCGTTGGTTTCAT
TTCTTTTTTAAACATTTCTGCACGACAATTATCACCATGCCCACCGGGTC
TACTTTTCCTACCGTTTCTGTTGTTACTACATCTGCTTCTATGTCTACTG
ACACTACCATTACAGCAGCTTCTGCTGATTGTTCTTTTCTTCCGGTGCTG
TTGCTGTGACTGCTGCTCCTGCTGCTCCTGCTACTCCTGCCGCTGCTGCT
GCTGCTGCTGCTCATACCACTGCTGCTGCTATTGCTGCGGCTACTGCTGC
TATTATTATTGCTGCTGCTGTT

protein sequence of jgi.p|Nanoce1779_2|598929

>mRNA_7487-protein ID=mRNA_7487-protein|Name=jgi.p|Nanoce1779_2|598929|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MSPFPPSCCCPSSVFCFLLPSSTCLSMRPSLYSPSSHFLEWPRLLPQINR
QLSFAHTITPSSPLSLVDARMCVCVCWMRAALVSFLF*

mRNA from alignment at scaffold_20:83499..84966+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7487 ID=mRNA_7487|Name=jgi.p|Nanoce1779_2|598929|organism=Nannochloropsis oceanica|type=mRNA|length=1468bp|location=Sequence derived from alignment at scaffold_20:83499..84966+ (Nannochloropsis oceanica)
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAG
AGAGAGAGAGAGCTAGAGAGAGAGAGAGAGAGAGCTCTAGAGCTAGCGAG
AGAGACGAGATCGCTATCTCGATCTCTAGAGCTCTATCGATACTCTACTC
TCGTCCGCCTCCTCTCTCTCGCGCTATCTCGAGCTCTCGCCTCTCTCTCT
TTCGCTCCTCTCTCGCTCTCTCTCTTCGCGCTCGCTCTCTCCTCTCCTCT
CTCTCTCTCTCTCTCGCTCTCCTCTCTCTCTCCTCTCTCTCCTCTCTCCC
TCGCTCTCTCTCTCTCCTCTCTCTCTTCTCTCGATAGAGAGAGAGAGAGA
GGCAAAACGAAGGAACGGAAGCCACAAGATGGTACGTGTAAAAAACGACA
CTGTTATATCACGCAGAGGGGGATGAGAGCAATCGAAGAATGAGAGAGAA
ATGATAATAAGAAATGCTGTCTACCACGCAGAGGAAAATGAGAGGAACCG
AAAAAAAAAGAGGAATTACGACCGTACGAATTTATGCATGTATGGGAACG
GGAGAGAGGGGGGGTTTGAAAAACATTCATCTATTTTGAATGAGGATTGG
GGACTCTATGGAAGGAGAGCAACAGTTTGACTTTGTTTATTGACAAGGAG
AAGAAATGAGGGGAAGAGACGGCACCATCCTCCGTCACTATCTGTCACTG
CATTCCTTAAATTTCTTGTCGCACCGTTCGAGGAAGCTCCTTTAATTTAA
AATCTCCTTAGCTCATCATCCTCCTCGCGCGTTCTCTTTCCAAGTCTATT
CTTCTTATCCTGCTCTTCCTCTTCCTCCTCATTCGTTTTCATCATTACCT
TCAGTGTCTTCTCCTCTCCTTCAATTCCTTCTTCTCGGCCCATTTGCTTT
AATTTTAAAATGCCTTTCTATACATCACATACTTCTGGCTTGCATGTCTC
CCTTTCCTCCTTCTTGTTGCTGTCCTTCTTCAGTATTCTGCTTTCTTCTT
CCATCTTCCACCTGCTTGTCTATGCGTCCATCCCTATACTCCCCTTCGAG
TCATTTCCTCGAATGGCCCCGTCTCCTCCCGCAGATAAATCGACAGCTAT
CCTTCGCTCACACAATTACTCCTTCATCACCCCTCTCCCTTGTGGATGCC
CGTATGTGTGTGTGCGTGTGCTGGATGCGGGCGGCGTTGGTTTCATTTCT
TTTTTAAACATTTCTGCACGACAATTATCACCATGCCCACCGGGTCTACT
TTTCCTACCGTTTCTGTTGTTACTACATCTGCTTCTATGTCTACTGACAC
TACCATTACAGCAGCTTCTGCTGATTGTTCTTTTCTTCCGGTGCTGTTGC
TGTGACTGCTGCTCCTGCTGCTCCTGCTACTCCTGCCGCTGCTGCTGCTG
CTGCTGCTCATACCACTGCTGCTGCTATTGCTGCGGCTACTGCTGCTATT
ATTATTGCTGCTGCTGTT

Coding sequence (CDS) from alignment at scaffold_20:83499..84966+

>mRNA_7487 ID=mRNA_7487|Name=jgi.p|Nanoce1779_2|598929|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at scaffold_20:83499..84966+ (Nannochloropsis oceanica)
ATGTCTCCCTTTCCTCCTTCTTGTTGCTGTCCTTCTTCAGTATTCTGCTT
TCTTCTTCCATCTTCCACCTGCTTGTCTATGCGTCCATCCCTATACTCCC
CTTCGAGTCATTTCCTCGAATGGCCCCGTCTCCTCCCGCAGATAAATCGA
CAGCTATCCTTCGCTCACACAATTACTCCTTCATCACCCCTCTCCCTTGT
GGATGCCCGTATGTGTGTGTGCGTGTGCTGGATGCGGGCGGCGTTGGTTT
CATTTCTTTTTTAA

Synonyms

Publications