jgi.p|Nanoce1779_2|598927, mRNA_7486 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598927
Unique Name	mRNA_7486
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2258
Alignment location	scaffold_20:80923..83314 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599013
Track	FilteredModels2
ProteinId	598927

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:80923..83314 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598927	gene_7486	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598927	mRNA_7486-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7486	CDS_7486	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:80923..83314+
coding sequence from alignment at scaffold_20:80923..83314+

mRNA sequence

>mRNA_7486 ID=mRNA_7486|Name=jgi.p|Nanoce1779_2|598927|organism=Nannochloropsis oceanica|type=mRNA|length=2258bp
GTGAAAGTCCACACTGGTGCGGGAGAATCGGAAGCGACTCTCACCAAATA
ACCACCGAGTCGATGCCATTTCCCTCCGTCCATCTTTCTATACATACTTT
CTCACTCATTCTCTCTCTCTCTCTCCTTGTCTCAGGACTTACGCCCTCGT
GAGCCTCACCGACCCTACCTGCAGAGACGAGAAGCAAATCCGCCGTGTGA
ACAACATGGAGGACCTCCCCCGTGTCCTGGCCGCACTGCAGAAGGAGAAG
CTTTCCTCCGCCAAGAGCCCGTTGGTTGTGCCTCCCGATGTCCCCATCGA
AGAAGAGGAGGAGGAGCAAGAGTCTGCAGACACAGACAGCACCACCAGCA
CGCCTAACACCATCGGCAGTATCACCAGCATCCCCACCACCAACGGTACC
ACGGCCGTTTCAGGGGACAACCCGCGCAGTTTGCTCCGAGCGCCTTTTGA
GGCGATTTATGTTCGCATCCTTCGCCCGTCCGGCCCTGCTTATGATGTAA
TCGAGCTACCTGGTATCCCCCCCATCAGCAGCAGCTACGGAAAGGAAGCC
ACTGATGCATATGAGAGAAACTTTCTGGATGTATTGGACGAGCATCCTGC
TAGCCTTATCCTTGCATTGGTGGAGGCGCCTGATCTTTTTGATCGAGCCA
AGGCCGTGCAGATGGCCAAGATCGCGGACCCTCAGTCCCGTCGTACCTTG
GGTGTGGTGACCAAAATGAACCTCGTTGAGAAAGACATGAACATTGTCCA
GAAACTCCAGATGACCTCCCGCAAGGACTGCCTCCTCCCCCTCGGGTACG
TTGCTATCCACGCAGGAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAG
ATCAAGTCCTCCTTCCCTTCCGACCCCCACGGGTGGAAAGCAGCCTTGGA
GGCCGAGAAGCAATTCTTCAACACGAATGCCCTCTTGCGTGGACTGAAAC
CAGAGAGGTGGGGTTTGGAGTCTCTCAAAAGCATGGTGGTCAGCTTCCAA
TCGAATGGCATTGCGCAGCAAATTCCCGAGACGATGCTCAAGATAAGAAA
CGAACTCACTGCCCTCCGAGGAGGGAAGGAGGCGGAAAAGGAGGGAGAAG
GGAAGGGGCTGGAGGGACTGAAGAGAGGAGGGCATGACGGGAAGGATGTG
GCGATGTTTGGGGCGAATACGGGGACGGATCATTTCACCGGGCTCTGCTC
GGAGACCGCGAGCTTGGCATCGGAAATGAAAGAGTTGGCGAATGGGGGTA
GGACACGACAAGAGCGAAACTTCAACCTCGGTGTCCGATTCCTGTCGTCC
ATGGACATGCGCGAGAAACATGCGACAGAGCTCATGCCGAGGTTTTGTAG
CCCGGAGAGTGAGGCGTGGCTGGTGAAAGAATTAGAGGAGTTCCGGGGGG
CAGTCAACAATAGTGATACCATGATGCATCCGATTTTTAAAAAAGCGGTG
CGGGAGGTGTGTTTCCCAGTGCTGAGGCAGTATGCGAAGAATGTGAAGGA
CGATACTGCCCATATCATGACGGAGGTCTTTTCGCTGTTGATTGATGAGC
GGTTTATAAACTATCCCCGCCTGGCGGAGGCGTTGAAACGGGATGTGTTG
GTGGTTCAGCAGGAGAAGATGAAGGTAGCCGATGAACTGATTGATCGTTT
GTTGGAGGCGGAATTGAATTGGGTGTTCATCCGGGAGAAAGACATGCATT
TGCTCCAGAAAGAGGTGGAGACTGGCCTGGGGGTCTCGACCCACCCGCAA
CAAAAGATGCACGAATGGTCATTGATTGCCGAGGGAGGGGCGGAGTCGAA
GACCAGCGGCAGCAGCAATAGCAGCAGCAACATCAATGCCCTATTCACTT
CCCCGGAAGGGACTGCGGCTGCTGCTTCTTCCTCGTCATCGCTGGCTCGT
CCCACAGTCCCAGCAGCTTCGAGTGTGTTGCGTCCTGCGGGCTTGAGCCA
AGAAGTGCGAGCAATGCAATTATCACTTGATGGCTATGTCCGTTTGTTGC
TGTGCAGGAACTTCTACGCCATTCCGATGAATGTGAGAAACATTATTGTT
AATGAATTCAGACAGGGCTTCGTTGCGACGGTCGCAGAGAAGTATAATGA
TGAGCAGCGTTTGCGGATGCTGATGCTGGAAGAGATGTGGGTGAATCAGA
AGAGACAGCAGGATGCGCAGAGGCAGGTGGATTTGGAGGGGATACTGCTC
AAAATGGACCAGCTCTCGTAAAGTCGAGGAAGGAAGGGTAAGGGTGAGGG
GGTGGGGA

protein sequence of jgi.p|Nanoce1779_2|598927

>mRNA_7486-protein ID=mRNA_7486-protein|Name=jgi.p|Nanoce1779_2|598927|organism=Nannochloropsis oceanica|type=polypeptide|length=672bp
MEDLPRVLAALQKEKLSSAKSPLVVPPDVPIEEEEEEQESADTDSTTSTP
NTIGSITSIPTTNGTTAVSGDNPRSLLRAPFEAIYVRILRPSGPAYDVIE
LPGIPPISSSYGKEATDAYERNFLDVLDEHPASLILALVEAPDLFDRAKA
VQMAKIADPQSRRTLGVVTKMNLVEKDMNIVQKLQMTSRKDCLLPLGYVA
IHAGGSSSSSSSSSKIKSSFPSDPHGWKAALEAEKQFFNTNALLRGLKPE
RWGLESLKSMVVSFQSNGIAQQIPETMLKIRNELTALRGGKEAEKEGEGK
GLEGLKRGGHDGKDVAMFGANTGTDHFTGLCSETASLASEMKELANGGRT
RQERNFNLGVRFLSSMDMREKHATELMPRFCSPESEAWLVKELEEFRGAV
NNSDTMMHPIFKKAVREVCFPVLRQYAKNVKDDTAHIMTEVFSLLIDERF
INYPRLAEALKRDVLVVQQEKMKVADELIDRLLEAELNWVFIREKDMHLL
QKEVETGLGVSTHPQQKMHEWSLIAEGGAESKTSGSSNSSSNINALFTSP
EGTAAAASSSSSLARPTVPAASSVLRPAGLSQEVRAMQLSLDGYVRLLLC
RNFYAIPMNVRNIIVNEFRQGFVATVAEKYNDEQRLRMLMLEEMWVNQKR
QQDAQRQVDLEGILLKMDQLS*

mRNA from alignment at scaffold_20:80923..83314+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7486 ID=mRNA_7486|Name=jgi.p|Nanoce1779_2|598927|organism=Nannochloropsis oceanica|type=mRNA|length=2392bp|location=Sequence derived from alignment at scaffold_20:80923..83314+ (Nannochloropsis oceanica)
GTGAAAGTCCACACTGGTGCGGGAGAATCGGAAGCGACTCTCACCAAATA
ACCACCGAGTCGATGCCATTTCCCTCCGTCCATCTTTCTATACATACTTT
CTCACTCATTCTCTCTCTCTCTCTCCTTGTCTCAGGACTTACGCCCTCGT
GAGCCTCACCGACCCTACCTGCAGAGACGAGAAGCAAATCCGCCGTGTGA
ACAACATGGAGGACCTCCCCCGTGTCCTGGCCGCACTGCAGAAGGAGAAG
CTTTCCTCCGCCAAGAGCCCGTTGGTTGTGCCTCCCGATGTCCCCATCGA
AGAAGAGGAGGAGGAGCAAGAGTCTGCAGACACAGACAGCACCACCAGCA
CGCCTAACACCATCGGCAGTATCACCAGCATCCCCACCACCAACGGTACC
ACGGCCGTTTCAGGGGACAACCCGCGCAGTTTGCTCCGAGCGCCTTTTGA
GGCGATTTATGTTCGCATCCTTCGCCCGTCCGGCCCTGCTTATGATGTAA
TCGAGCTACCTGGTATCCCCCCCATCAGCAGCAGCTACGGAAAGGAAGCC
ACTGATGCATATGAGAGAAACTTTCTGGATGTATTGGACGAGCATCCTGC
TAGCCTTATCCTTGCATTGGTGGAGGCGCCTGATCTTTTTGATCGAGCCA
AGGCCGTGCAGATGGCCAAGATCGCGGACCCTCAGTCCCGTCGTACCTTG
GGTGTAAGTTTCTCCCTTCCTCCTTCCCTCCTTCCCTCCTTTCCTTCCTT
CCTTCCTCACCATTCGTGACTATTTTACTCATCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCATCCACACCCTTGCAGGTGGTGACCAAAA
TGAACCTCGTTGAGAAAGACATGAACATTGTCCAGAAACTCCAGATGACC
TCCCGCAAGGACTGCCTCCTCCCCCTCGGGTACGTTGCTATCCACGCAGG
AGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGATCAAGTCCTCCTTCC
CTTCCGACCCCCACGGGTGGAAAGCAGCCTTGGAGGCCGAGAAGCAATTC
TTCAACACGAATGCCCTCTTGCGTGGACTGAAACCAGAGAGGTGGGGTTT
GGAGTCTCTCAAAAGCATGGTGGTCAGCTTCCAATCGAATGGCATTGCGC
AGCAAATTCCCGAGACGATGCTCAAGATAAGAAACGAACTCACTGCCCTC
CGAGGAGGGAAGGAGGCGGAAAAGGAGGGAGAAGGGAAGGGGCTGGAGGG
ACTGAAGAGAGGAGGGCATGACGGGAAGGATGTGGCGATGTTTGGGGCGA
ATACGGGGACGGATCATTTCACCGGGCTCTGCTCGGAGACCGCGAGCTTG
GCATCGGAAATGAAAGAGTTGGCGAATGGGGGTAGGACACGACAAGAGCG
AAACTTCAACCTCGGTGTCCGATTCCTGTCGTCCATGGACATGCGCGAGA
AACATGCGACAGAGCTCATGCCGAGGTTTTGTAGCCCGGAGAGTGAGGCG
TGGCTGGTGAAAGAATTAGAGGAGTTCCGGGGGGCAGTCAACAATAGTGA
TACCATGATGCATCCGATTTTTAAAAAAGCGGTGCGGGAGGTGTGTTTCC
CAGTGCTGAGGCAGTATGCGAAGAATGTGAAGGACGATACTGCCCATATC
ATGACGGAGGTCTTTTCGCTGTTGATTGATGAGCGGTTTATAAACTATCC
CCGCCTGGCGGAGGCGTTGAAACGGGATGTGTTGGTGGTTCAGCAGGAGA
AGATGAAGGTAGCCGATGAACTGATTGATCGTTTGTTGGAGGCGGAATTG
AATTGGGTGTTCATCCGGGAGAAAGACATGCATTTGCTCCAGAAAGAGGT
GGAGACTGGCCTGGGGGTCTCGACCCACCCGCAACAAAAGATGCACGAAT
GGTCATTGATTGCCGAGGGAGGGGCGGAGTCGAAGACCAGCGGCAGCAGC
AATAGCAGCAGCAACATCAATGCCCTATTCACTTCCCCGGAAGGGACTGC
GGCTGCTGCTTCTTCCTCGTCATCGCTGGCTCGTCCCACAGTCCCAGCAG
CTTCGAGTGTGTTGCGTCCTGCGGGCTTGAGCCAAGAAGTGCGAGCAATG
CAATTATCACTTGATGGCTATGTCCGTTTGTTGCTGTGCAGGAACTTCTA
CGCCATTCCGATGAATGTGAGAAACATTATTGTTAATGAATTCAGACAGG
GCTTCGTTGCGACGGTCGCAGAGAAGTATAATGATGAGCAGCGTTTGCGG
ATGCTGATGCTGGAAGAGATGTGGGTGAATCAGAAGAGACAGCAGGATGC
GCAGAGGCAGGTGGATTTGGAGGGGATACTGCTCAAAATGGACCAGCTCT
CGTAAAGTCGAGGAAGGAAGGGTAAGGGTGAGGGGGTGGGGA

Coding sequence (CDS) from alignment at scaffold_20:80923..83314+

>mRNA_7486 ID=mRNA_7486|Name=jgi.p|Nanoce1779_2|598927|organism=Nannochloropsis oceanica|type=CDS|length=4032bp|location=Sequence derived from alignment at scaffold_20:80923..83314+ (Nannochloropsis oceanica)
ATGGAGGACCTCCCCCGTGTCCTGGCCGCACTGCAGAAGGAGAAGCTTTC
CTCCGCCAAGAGCCCGTTGGTTGTGCCTCCCGATGTCCCCATCGAAGAAG
AGGAGGAGGAGCAAGAGTCTGCAGACACAGACAGCACCACCAGCACGCCT
AACACCATCGGCAGTATCACCAGCATCCCCACCACCAACGGTACCACGGC
CGTTTCAGGGGACAACCCGCGCAGTTTGCTCCGAGCGCCTTTTGAGGCGA
TTTATGTTCGCATCCTTCGCCCGTCCGGCCCTGCTTATGATGTAATCGAG
CTACCTGGTATCCCCCCCATCAGCAGCAGCTACGGAAAGGAAGCCACTGA
TGCATATGAGAGAAACTTTCTGGATGTATTGGACGAGCATCCTGCTAGCC
TTATCCTTGCATTGGTGGAGGCGCCTGATCTTTTTGATCGAGCCAAGGCC
GTGCAGATGGCCAAGATCGCGGACCCTCAGTCCCGTCGTACCTTGGGTGT
GGTGACCAAAATGAACCTCGTTGAGAAAGACATGAACATTGTCCAGAAAC
TCCAGATGACCTCCCGCAAGGACTGCCTCCTCCCCCTCGGGTACGTTGCT
ATCCACGCAGGAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGATCAA
GTCCTCCTTCCCTTCCGACCCCCACGGGTGGAAAGCAGCCTTGGAGGCCG
AGAAGCAATTCTTCAACACGAATGCCCTCTTGCGTGGACTGAAACCAGAG
AGGTGGGGTTTGGAGTCTCTCAAAAGCATGGTGGTCAGCTTCCAATCGAA
TGGCATTGCGCAGCAAATTCCCGAGACGATGCTCAAGATAAGAAACGAAC
TCACTGCCCTCCGAGGAGGGAAGGAGGCGGAAAAGGAGGGAGAAGGGAAG
GGGCTGGAGGGACTGAAGAGAGGAGGGCATGACGGGAAGGATGTGGCGAT
GTTTGGGGCGAATACGGGGACGGATCATTTCACCGGGCTCTGCTCGGAGA
CCGCGAGCTTGGCATCGGAAATGAAAGAGTTGGCGAATGGGGGTAGGACA
CGACAAGAGCGAAACTTCAACCTCGGTGTCCGATTCCTGTCGTCCATGGA
CATGCGCGAGAAACATGCGACAGAGCTCATGCCGAGGTTTTGTAGCCCGG
AGAGTGAGGCGTGGCTGGTGAAAGAATTAGAGGAGTTCCGGGGGGCAGTC
AACAATAGTGATACCATGATGCATCCGATTTTTAAAAAAGCGGTGCGGGA
GGTGTGTTTCCCAGTGCTGAGGCAGTATGCGAAGAATGTGAAGGACGATA
CTGCCCATATCATGACGGAGGTCTTTTCGCTGTTGATTGATGAGCGGTTT
ATAAACTATCCCCGCCTGGCGGAGGCGTTGAAACGGGATGTGTTGGTGGT
TCAGCAGGAGAAGATGAAGGTAGCCGATGAACTGATTGATCGTTTGTTGG
AGGCGGAATTGAATTGGGTGTTCATCCGGGAGAAAGACATGCATTTGCTC
CAGAAAGAGGTGGAGACTGGCCTGGGGGTCTCGACCCACCCGCAACAAAA
GATGCACGAATGGTCATTGATTGCCGAGGGAGGGGCGGAGTCGAAGACCA
GCGGCAGCAGCAATAGCAGCAGCAACATCAATGCCCTATTCACTTCCCCG
GAAGGGACTGCGGCTGCTGCTTCTTCCTCGTCATCGCTGGCTCGTCCCAC
AGTCCCAGCAGCTTCGAGTGTGTTGCGTCCTGCGGGCTTGAGCCAAGAAG
TGCGAGCAATGCAATTATCACTTGATGGCTATGTCCGTTTGTTGCTGTGC
AGGAACTTCTACGCCATTCCGATGAATGTGAGAAACATTATTGTTAATGA
ATTCAGACAGGGCTTCGTTGCGACGGTCGCAGAGAAGTATAATGATGAGC
AGCGTTTGCGGATGCTGATGCTGGAAGAGATGTGGGTGAATCAGAAGAGA
CAGCAGGATGCGCAGAGGCAGGTGGATTTGGAGGGGATACTGCTCAAAAT
GGACCAGCTCTCGTAAATGGAGGACCTCCCCCGTGTCCTGGCCGCACTGC
AGAAGGAGAAGCTTTCCTCCGCCAAGAGCCCGTTGGTTGTGCCTCCCGAT
GTCCCCATCGAAGAAGAGGAGGAGGAGCAAGAGTCTGCAGACACAGACAG
CACCACCAGCACGCCTAACACCATCGGCAGTATCACCAGCATCCCCACCA
CCAACGGTACCACGGCCGTTTCAGGGGACAACCCGCGCAGTTTGCTCCGA
GCGCCTTTTGAGGCGATTTATGTTCGCATCCTTCGCCCGTCCGGCCCTGC
TTATGATGTAATCGAGCTACCTGGTATCCCCCCCATCAGCAGCAGCTACG
GAAAGGAAGCCACTGATGCATATGAGAGAAACTTTCTGGATGTATTGGAC
GAGCATCCTGCTAGCCTTATCCTTGCATTGGTGGAGGCGCCTGATCTTTT
TGATCGAGCCAAGGCCGTGCAGATGGCCAAGATCGCGGACCCTCAGTCCC
GTCGTACCTTGGGTGTGGTGACCAAAATGAACCTCGTTGAGAAAGACATG
AACATTGTCCAGAAACTCCAGATGACCTCCCGCAAGGACTGCCTCCTCCC
CCTCGGGTACGTTGCTATCCACGCAGGAGGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAAGATCAAGTCCTCCTTCCCTTCCGACCCCCACGGGTGGAAA
GCAGCCTTGGAGGCCGAGAAGCAATTCTTCAACACGAATGCCCTCTTGCG
TGGACTGAAACCAGAGAGGTGGGGTTTGGAGTCTCTCAAAAGCATGGTGG
TCAGCTTCCAATCGAATGGCATTGCGCAGCAAATTCCCGAGACGATGCTC
AAGATAAGAAACGAACTCACTGCCCTCCGAGGAGGGAAGGAGGCGGAAAA
GGAGGGAGAAGGGAAGGGGCTGGAGGGACTGAAGAGAGGAGGGCATGACG
GGAAGGATGTGGCGATGTTTGGGGCGAATACGGGGACGGATCATTTCACC
GGGCTCTGCTCGGAGACCGCGAGCTTGGCATCGGAAATGAAAGAGTTGGC
GAATGGGGGTAGGACACGACAAGAGCGAAACTTCAACCTCGGTGTCCGAT
TCCTGTCGTCCATGGACATGCGCGAGAAACATGCGACAGAGCTCATGCCG
AGGTTTTGTAGCCCGGAGAGTGAGGCGTGGCTGGTGAAAGAATTAGAGGA
GTTCCGGGGGGCAGTCAACAATAGTGATACCATGATGCATCCGATTTTTA
AAAAAGCGGTGCGGGAGGTGTGTTTCCCAGTGCTGAGGCAGTATGCGAAG
AATGTGAAGGACGATACTGCCCATATCATGACGGAGGTCTTTTCGCTGTT
GATTGATGAGCGGTTTATAAACTATCCCCGCCTGGCGGAGGCGTTGAAAC
GGGATGTGTTGGTGGTTCAGCAGGAGAAGATGAAGGTAGCCGATGAACTG
ATTGATCGTTTGTTGGAGGCGGAATTGAATTGGGTGTTCATCCGGGAGAA
AGACATGCATTTGCTCCAGAAAGAGGTGGAGACTGGCCTGGGGGTCTCGA
CCCACCCGCAACAAAAGATGCACGAATGGTCATTGATTGCCGAGGGAGGG
GCGGAGTCGAAGACCAGCGGCAGCAGCAATAGCAGCAGCAACATCAATGC
CCTATTCACTTCCCCGGAAGGGACTGCGGCTGCTGCTTCTTCCTCGTCAT
CGCTGGCTCGTCCCACAGTCCCAGCAGCTTCGAGTGTGTTGCGTCCTGCG
GGCTTGAGCCAAGAAGTGCGAGCAATGCAATTATCACTTGATGGCTATGT
CCGTTTGTTGCTGTGCAGGAACTTCTACGCCATTCCGATGAATGTGAGAA
ACATTATTGTTAATGAATTCAGACAGGGCTTCGTTGCGACGGTCGCAGAG
AAGTATAATGATGAGCAGCGTTTGCGGATGCTGATGCTGGAAGAGATGTG
GGTGAATCAGAAGAGACAGCAGGATGCGCAGAGGCAGGTGGATTTGGAGG
GGATACTGCTCAAAATGGACCAGCTCTCGTAA

Synonyms

Publications