jgi.p|Nanoce1779_2|632285, mRNA_7485 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|632285
Unique Name	mRNA_7485
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2154
Alignment location	scaffold_20:77884..80037 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	632371
Track	FilteredModels2
ProteinId	632285

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:77884..80037 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632285	gene_7485	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632285	mRNA_7485-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7485	CDS_7485	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:77884..80037-
coding sequence from alignment at scaffold_20:77884..80037-

mRNA sequence

>mRNA_7485 ID=mRNA_7485|Name=jgi.p|Nanoce1779_2|632285|organism=Nannochloropsis oceanica|type=mRNA|length=2154bp
GCCGCAGTCTCTCATTTTTGTCATTGTGCTGGCTTGCTTGCTTGTCACCT
GACGTCTTATTTACAGACATGTAGGACAAGCAGGTATTGGCTGAGAGCAT
AAGCTATCGAATGAGCGGAGGGACCTATGGCCAATCCCCGGAGTTCCCCT
TTTTGGTTGCCCATGCTATTTTTTGAGATGCAACCTTGTTGGGCAGGCCA
AGAAAGTCCAAAACACCATGTGGGGTCTCTTCCCAAATATATATCCATCT
GCTATACCATCTAATTGACCTTTGAAACACATGCATAGTTGTCTCTTTCA
CGTCTTCAATATTCACCCGCCCCTCTCCTTCCTCGCGTGTGTCATTATCC
AACCACACAGCTCGCAGAAGCCAACCAATTAAACCAAGCCAGGCAAGCAC
CACCCTCGAAAGTATGGCCTGCATTCCCTGCCGTGGCCCAAGACCCGATG
TAAAGGCGGCACATCCCAAGGTCTCGAGCCACCGCCCTCTGAAAAATTGG
GGCCACTCTTACCAATTCACGCCTGCAGTGGTGGTGGAAGCCACGACCTT
CGACGACGTCATCGAAGCCGTGAAAGATACCGTCAAATACCCGACGCCTG
TGCGTGCTTTGGGCAACATCCACACCGTGACGGAGGCAGTCGTGAACGAG
GGTGGGACCGTGGTGCTCATGCGCGGGTTGCGTGCAATCATCTCGGTGGG
CAACGACGAGGAAGGGCAGACGGTCACAGCGCAGGCTGGGACTTCCTTGC
TGGAGCTGCACACGTGGCTAGGGAAAAAAGGGTTGGAAATGCTAGTGGCC
CCAGAGATCGGCGATGCGACCATCGGCTCAGTGGTTGGGAGTGTGACTAA
GGATGCAGGGCCGGGTCCGAGCAGTGAGACGGGATCTTTGTACAAGGCCA
TTGTGGGGGTTAAATACGTGGATCATACAGGACAAGTGGTAGTCTTGACC
AAAAAGACAAATGGGGCGGCACTCGGCCTCTTCAAATGCTCGGAGGGGCT
GCTAGGCATTGTGTTGGAGGTGACGTTTCGGGTGTTTCCTCAACGGTTGG
TAAGGCTTGGATTGACCATCATGGACACGAAGGAGATGGTGAAAAAAATC
TCGACGCAAATTCTGTCAAAGGGACGGACAGCTTTCATCTTGGTGCAGCC
GGAATTGAGTTTCATCGAGACACGGGAGCCGGCGAAAGAGGGGGCGAAAG
CGAGTAGTGAGTTTTGGTGGCAGACAATCGCGGCCTTCAAGCTACCCAAT
TTTCAGCATGGCCGCGTGTTCTTCCCCTTTCCTCTATTGAGGATGACACC
GTACCGTGCCAACGTCTACAGGCGAACCCAAGTGAATCATTACGGCGAGC
CGGGGCCCAAGGACACGAGGTTGGATTTCTCGTGGTATGAATATCCGTTC
GAGCGATTCGAGGAGGTGATCACGGAATTCAACGCATTCACCTTAGACTT
TGCGGGGCGAAATGGTGGGTGGCGGCCGGGGGCGTGTGCCACGTACTTCA
TGGAGCGGATGACAGATAAGCCCAACGGATGGTTTAGTTGTAACGGTAAA
GGGTTTGACAAGCCGGGGGTGAGCTTCACGCTTGATCCTATTTACAAGAA
CCCAAATGACCCGAATTGGCGCCAGTTTGTGAGGGAATGCAACGCATTTG
CCATCGCGCATGGAGGACGGGTGGCCCTCACTCAGACGAGAGAGATGGAC
CGGGATACGTATCTGGCATGCCCTGGGCAGGTTCCGCTGAAGGAGGCTCC
GAATAAACGGTTCACCACTCCGTTTTATGCCCGTTATGTGGAGAAGGAGG
GGGAGAACGTTGAGATCCCCCTTTAGAGGGCAAGAGGTGGGAGGGAGAGT
GAGCGAAGCAGGTAAGAAGGAAGCCTTGCTGCTTAAGAGTAAGGGCGAAT
CAAGTCGGAGATGGAAAAAATTGAAAAGGTAAACTGGTTGTAAACTTTGT
GACTGCGCTTTCGGGAAAGGAAAAAAGCAGGGAGGACGACAGGGAGGATG
AGCTTGACGGGCGCAAAGAAATGCCTCACACAGAATTTGATTAAAAACAT
AAAAAAGAAAATATAGCGGAAGGGCATACAAGGAAGGGAATGGGCAGTGG
AATGTAAAAAGGAAAAATAAGCCAAGTTTCAGCAAAGATACAAGATATAG
ATAG

protein sequence of jgi.p|Nanoce1779_2|632285

>mRNA_7485-protein ID=mRNA_7485-protein|Name=jgi.p|Nanoce1779_2|632285|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MACIPCRGPRPDVKAAHPKVSSHRPLKNWGHSYQFTPAVVVEATTFDDVI
EAVKDTVKYPTPVRALGNIHTVTEAVVNEGGTVVLMRGLRAIISVGNDEE
GQTVTAQAGTSLLELHTWLGKKGLEMLVAPEIGDATIGSVVGSVTKDAGP
GPSSETGSLYKAIVGVKYVDHTGQVVVLTKKTNGAALGLFKCSEGLLGIV
LEVTFRVFPQRLVRLGLTIMDTKEMVKKISTQILSKGRTAFILVQPELSF
IETREPAKEGAKASSEFWWQTIAAFKLPNFQHGRVFFPFPLLRMTPYRAN
VYRRTQVNHYGEPGPKDTRLDFSWYEYPFERFEEVITEFNAFTLDFAGRN
GGWRPGACATYFMERMTDKPNGWFSCNGKGFDKPGVSFTLDPIYKNPNDP
NWRQFVRECNAFAIAHGGRVALTQTREMDRDTYLACPGQVPLKEAPNKRF
TTPFYARYVEKEGENVEIPL*

mRNA from alignment at scaffold_20:77884..80037-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7485 ID=mRNA_7485|Name=jgi.p|Nanoce1779_2|632285|organism=Nannochloropsis oceanica|type=mRNA|length=2154bp|location=Sequence derived from alignment at scaffold_20:77884..80037- (Nannochloropsis oceanica)
GCCGCAGTCTCTCATTTTTGTCATTGTGCTGGCTTGCTTGCTTGTCACCT
GACGTCTTATTTACAGACATGTAGGACAAGCAGGTATTGGCTGAGAGCAT
AAGCTATCGAATGAGCGGAGGGACCTATGGCCAATCCCCGGAGTTCCCCT
TTTTGGTTGCCCATGCTATTTTTTGAGATGCAACCTTGTTGGGCAGGCCA
AGAAAGTCCAAAACACCATGTGGGGTCTCTTCCCAAATATATATCCATCT
GCTATACCATCTAATTGACCTTTGAAACACATGCATAGTTGTCTCTTTCA
CGTCTTCAATATTCACCCGCCCCTCTCCTTCCTCGCGTGTGTCATTATCC
AACCACACAGCTCGCAGAAGCCAACCAATTAAACCAAGCCAGGCAAGCAC
CACCCTCGAAAGTATGGCCTGCATTCCCTGCCGTGGCCCAAGACCCGATG
TAAAGGCGGCACATCCCAAGGTCTCGAGCCACCGCCCTCTGAAAAATTGG
GGCCACTCTTACCAATTCACGCCTGCAGTGGTGGTGGAAGCCACGACCTT
CGACGACGTCATCGAAGCCGTGAAAGATACCGTCAAATACCCGACGCCTG
TGCGTGCTTTGGGCAACATCCACACCGTGACGGAGGCAGTCGTGAACGAG
GGTGGGACCGTGGTGCTCATGCGCGGGTTGCGTGCAATCATCTCGGTGGG
CAACGACGAGGAAGGGCAGACGGTCACAGCGCAGGCTGGGACTTCCTTGC
TGGAGCTGCACACGTGGCTAGGGAAAAAAGGGTTGGAAATGCTAGTGGCC
CCAGAGATCGGCGATGCGACCATCGGCTCAGTGGTTGGGAGTGTGACTAA
GGATGCAGGGCCGGGTCCGAGCAGTGAGACGGGATCTTTGTACAAGGCCA
TTGTGGGGGTTAAATACGTGGATCATACAGGACAAGTGGTAGTCTTGACC
AAAAAGACAAATGGGGCGGCACTCGGCCTCTTCAAATGCTCGGAGGGGCT
GCTAGGCATTGTGTTGGAGGTGACGTTTCGGGTGTTTCCTCAACGGTTGG
TAAGGCTTGGATTGACCATCATGGACACGAAGGAGATGGTGAAAAAAATC
TCGACGCAAATTCTGTCAAAGGGACGGACAGCTTTCATCTTGGTGCAGCC
GGAATTGAGTTTCATCGAGACACGGGAGCCGGCGAAAGAGGGGGCGAAAG
CGAGTAGTGAGTTTTGGTGGCAGACAATCGCGGCCTTCAAGCTACCCAAT
TTTCAGCATGGCCGCGTGTTCTTCCCCTTTCCTCTATTGAGGATGACACC
GTACCGTGCCAACGTCTACAGGCGAACCCAAGTGAATCATTACGGCGAGC
CGGGGCCCAAGGACACGAGGTTGGATTTCTCGTGGTATGAATATCCGTTC
GAGCGATTCGAGGAGGTGATCACGGAATTCAACGCATTCACCTTAGACTT
TGCGGGGCGAAATGGTGGGTGGCGGCCGGGGGCGTGTGCCACGTACTTCA
TGGAGCGGATGACAGATAAGCCCAACGGATGGTTTAGTTGTAACGGTAAA
GGGTTTGACAAGCCGGGGGTGAGCTTCACGCTTGATCCTATTTACAAGAA
CCCAAATGACCCGAATTGGCGCCAGTTTGTGAGGGAATGCAACGCATTTG
CCATCGCGCATGGAGGACGGGTGGCCCTCACTCAGACGAGAGAGATGGAC
CGGGATACGTATCTGGCATGCCCTGGGCAGGTTCCGCTGAAGGAGGCTCC
GAATAAACGGTTCACCACTCCGTTTTATGCCCGTTATGTGGAGAAGGAGG
GGGAGAACGTTGAGATCCCCCTTTAGAGGGCAAGAGGTGGGAGGGAGAGT
GAGCGAAGCAGGTAAGAAGGAAGCCTTGCTGCTTAAGAGTAAGGGCGAAT
CAAGTCGGAGATGGAAAAAATTGAAAAGGTAAACTGGTTGTAAACTTTGT
GACTGCGCTTTCGGGAAAGGAAAAAAGCAGGGAGGACGACAGGGAGGATG
AGCTTGACGGGCGCAAAGAAATGCCTCACACAGAATTTGATTAAAAACAT
AAAAAAGAAAATATAGCGGAAGGGCATACAAGGAAGGGAATGGGCAGTGG
AATGTAAAAAGGAAAAATAAGCCAAGTTTCAGCAAAGATACAAGATATAG
ATAG

Coding sequence (CDS) from alignment at scaffold_20:77884..80037-

>mRNA_7485 ID=mRNA_7485|Name=jgi.p|Nanoce1779_2|632285|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at scaffold_20:77884..80037- (Nannochloropsis oceanica)
ATGGCCTGCATTCCCTGCCGTGGCCCAAGACCCGATGTAAAGGCGGCACA
TCCCAAGGTCTCGAGCCACCGCCCTCTGAAAAATTGGGGCCACTCTTACC
AATTCACGCCTGCAGTGGTGGTGGAAGCCACGACCTTCGACGACGTCATC
GAAGCCGTGAAAGATACCGTCAAATACCCGACGCCTGTGCGTGCTTTGGG
CAACATCCACACCGTGACGGAGGCAGTCGTGAACGAGGGTGGGACCGTGG
TGCTCATGCGCGGGTTGCGTGCAATCATCTCGGTGGGCAACGACGAGGAA
GGGCAGACGGTCACAGCGCAGGCTGGGACTTCCTTGCTGGAGCTGCACAC
GTGGCTAGGGAAAAAAGGGTTGGAAATGCTAGTGGCCCCAGAGATCGGCG
ATGCGACCATCGGCTCAGTGGTTGGGAGTGTGACTAAGGATGCAGGGCCG
GGTCCGAGCAGTGAGACGGGATCTTTGTACAAGGCCATTGTGGGGGTTAA
ATACGTGGATCATACAGGACAAGTGGTAGTCTTGACCAAAAAGACAAATG
GGGCGGCACTCGGCCTCTTCAAATGCTCGGAGGGGCTGCTAGGCATTGTG
TTGGAGGTGACGTTTCGGGTGTTTCCTCAACGGTTGGTAAGGCTTGGATT
GACCATCATGGACACGAAGGAGATGGTGAAAAAAATCTCGACGCAAATTC
TGTCAAAGGGACGGACAGCTTTCATCTTGGTGCAGCCGGAATTGAGTTTC
ATCGAGACACGGGAGCCGGCGAAAGAGGGGGCGAAAGCGAGTAGTGAGTT
TTGGTGGCAGACAATCGCGGCCTTCAAGCTACCCAATTTTCAGCATGGCC
GCGTGTTCTTCCCCTTTCCTCTATTGAGGATGACACCGTACCGTGCCAAC
GTCTACAGGCGAACCCAAGTGAATCATTACGGCGAGCCGGGGCCCAAGGA
CACGAGGTTGGATTTCTCGTGGTATGAATATCCGTTCGAGCGATTCGAGG
AGGTGATCACGGAATTCAACGCATTCACCTTAGACTTTGCGGGGCGAAAT
GGTGGGTGGCGGCCGGGGGCGTGTGCCACGTACTTCATGGAGCGGATGAC
AGATAAGCCCAACGGATGGTTTAGTTGTAACGGTAAAGGGTTTGACAAGC
CGGGGGTGAGCTTCACGCTTGATCCTATTTACAAGAACCCAAATGACCCG
AATTGGCGCCAGTTTGTGAGGGAATGCAACGCATTTGCCATCGCGCATGG
AGGACGGGTGGCCCTCACTCAGACGAGAGAGATGGACCGGGATACGTATC
TGGCATGCCCTGGGCAGGTTCCGCTGAAGGAGGCTCCGAATAAACGGTTC
ACCACTCCGTTTTATGCCCGTTATGTGGAGAAGGAGGGGGAGAACGTTGA
GATCCCCCTTTAG

Synonyms

Publications