jgi.p|Nanoce1779_2|598919, mRNA_7484 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598919
Unique Name	mRNA_7484
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1164
Alignment location	scaffold_20:76718..77881 -

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Properties


Property Name	Value
TranscriptId	599005
Track	FilteredModels2
ProteinId	598919

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:76718..77881 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598919	gene_7484	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598919	mRNA_7484-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7484	CDS_7484	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:76718..77881-
coding sequence from alignment at scaffold_20:76718..77881-

mRNA sequence

>mRNA_7484 ID=mRNA_7484|Name=jgi.p|Nanoce1779_2|598919|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp
TCTTGAACCACGCAGCGCTTGCTTGTTCTTTCAACTTTGTTTCCCTGCTT
CCTTTTGCCAGAGGCCCTTTTCTAATAAAAAGACAGCTGGTGGCTGAGTG
GAGATGCTTTGTGTGTACGGGCAGGGACACAATTTGTTGATTCGTTGTGT
TTGCCCTTCTCCACGTACTTTCTCTTTACCTTAATGTTTGTGGGGGGACC
AGTAGTGGCTCGGGCGCAACAGGAAATAGAACGCAAGTGCAGATGTGTAT
GCGTGGACTCATCCCTAATATAGTAGCTACATCCTTTCTGGCTGTCGCTA
TCGCTCGTTCACCCTTCCTCTCCTCTCTCCTTCACCAAGGTCTTTTGAGG
GCTGAACATCTCTCTACCCTTTATTCTTATTCTTTCTCCTTCTCTTCGGT
CCTTTCTCTGTATCCTTGCTTTTTCCTTCTCTTTCTCACTCTGTTTCTCT
CTCTCTCTCTACTCTCCTTTGAGCTCTCTCTGACACTTTCATTTCGCTTT
CATTTCGTTAATTTCTCTCCAACTCCCATCCCCTCTCTTTCTTTTTTCTT
ATCATAGCTGTCTCACGCGTTCCCTTCGCTATTTTCCTTACGTATGAATT
CACGCATACGGAAAATTTTGGTTGAAGAAAAAAAATCACATTTCAATTAT
TTGTAATAGGGCAAGGATTTCAAACACCAAACGGTGATTTCAAACACCAA
ATGGTGGGAGAGGCATCGATTTCTTATATCTTGCTCGCTCGTCTGCTTGA
AACTCCATTCAACTCGTACCCGTACTCTATGTACGCTACATACATTTGCC
TACGCAAATTGCCTCCCGACTAAATATGGCTCTTGGTGGTAGGAGGCTTT
GCTTCTACTTGTTCGATCTCACTTGTTCCGACAATGCACCATGTTCTTCT
CTCAACAGACAAGAAATAAATCCAACATTTCTGAAGGCCCCGACTTAATC
TAGACTAATATTTTTTCTACACGCCGCACCATTACATTTGTCATTGTGTT
GTGATCCTGCAAAAAGATGCTGATCCAGCTCAACGCACAATCAACCACAA
AGAATATTACGCACACACGGTTCCCTCCCTCCCTCCCTCCCTTCACATCT
TGTCCACATCCATCTGCTCCCCCTCCAAAAGCGTTGGCAATGCCTGTTCT
TCCCCTTCCACACC

protein sequence of jgi.p|Nanoce1779_2|598919

>mRNA_7484-protein ID=mRNA_7484-protein|Name=jgi.p|Nanoce1779_2|598919|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MCMRGLIPNIVATSFLAVAIARSPFLSSLLHQGLLRAEHLSTLYSYSFSF
SSVLSLYPCFFLLFLTLFLSLSLLSFELSLTLSFRFHFVNFSPTPIPSLS
FFLS*

mRNA from alignment at scaffold_20:76718..77881-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7484 ID=mRNA_7484|Name=jgi.p|Nanoce1779_2|598919|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp|location=Sequence derived from alignment at scaffold_20:76718..77881- (Nannochloropsis oceanica)
TCTTGAACCACGCAGCGCTTGCTTGTTCTTTCAACTTTGTTTCCCTGCTT
CCTTTTGCCAGAGGCCCTTTTCTAATAAAAAGACAGCTGGTGGCTGAGTG
GAGATGCTTTGTGTGTACGGGCAGGGACACAATTTGTTGATTCGTTGTGT
TTGCCCTTCTCCACGTACTTTCTCTTTACCTTAATGTTTGTGGGGGGACC
AGTAGTGGCTCGGGCGCAACAGGAAATAGAACGCAAGTGCAGATGTGTAT
GCGTGGACTCATCCCTAATATAGTAGCTACATCCTTTCTGGCTGTCGCTA
TCGCTCGTTCACCCTTCCTCTCCTCTCTCCTTCACCAAGGTCTTTTGAGG
GCTGAACATCTCTCTACCCTTTATTCTTATTCTTTCTCCTTCTCTTCGGT
CCTTTCTCTGTATCCTTGCTTTTTCCTTCTCTTTCTCACTCTGTTTCTCT
CTCTCTCTCTACTCTCCTTTGAGCTCTCTCTGACACTTTCATTTCGCTTT
CATTTCGTTAATTTCTCTCCAACTCCCATCCCCTCTCTTTCTTTTTTCTT
ATCATAGCTGTCTCACGCGTTCCCTTCGCTATTTTCCTTACGTATGAATT
CACGCATACGGAAAATTTTGGTTGAAGAAAAAAAATCACATTTCAATTAT
TTGTAATAGGGCAAGGATTTCAAACACCAAACGGTGATTTCAAACACCAA
ATGGTGGGAGAGGCATCGATTTCTTATATCTTGCTCGCTCGTCTGCTTGA
AACTCCATTCAACTCGTACCCGTACTCTATGTACGCTACATACATTTGCC
TACGCAAATTGCCTCCCGACTAAATATGGCTCTTGGTGGTAGGAGGCTTT
GCTTCTACTTGTTCGATCTCACTTGTTCCGACAATGCACCATGTTCTTCT
CTCAACAGACAAGAAATAAATCCAACATTTCTGAAGGCCCCGACTTAATC
TAGACTAATATTTTTTCTACACGCCGCACCATTACATTTGTCATTGTGTT
GTGATCCTGCAAAAAGATGCTGATCCAGCTCAACGCACAATCAACCACAA
AGAATATTACGCACACACGGTTCCCTCCCTCCCTCCCTCCCTTCACATCT
TGTCCACATCCATCTGCTCCCCCTCCAAAAGCGTTGGCAATGCCTGTTCT
TCCCCTTCCACACC

Coding sequence (CDS) from alignment at scaffold_20:76718..77881-

>mRNA_7484 ID=mRNA_7484|Name=jgi.p|Nanoce1779_2|598919|organism=Nannochloropsis oceanica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_20:76718..77881- (Nannochloropsis oceanica)
ATGTGTATGCGTGGACTCATCCCTAATATAGTAGCTACATCCTTTCTGGC
TGTCGCTATCGCTCGTTCACCCTTCCTCTCCTCTCTCCTTCACCAAGGTC
TTTTGAGGGCTGAACATCTCTCTACCCTTTATTCTTATTCTTTCTCCTTC
TCTTCGGTCCTTTCTCTGTATCCTTGCTTTTTCCTTCTCTTTCTCACTCT
GTTTCTCTCTCTCTCTCTACTCTCCTTTGAGCTCTCTCTGACACTTTCAT
TTCGCTTTCATTTCGTTAATTTCTCTCCAACTCCCATCCCCTCTCTTTCT
TTTTTCTTATCATAG

Synonyms

Publications