jgi.p|Nanoce1779_2|598918, mRNA_7483 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598918
Unique Name	mRNA_7483
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1521
Alignment location	scaffold_20:75132..76833 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599004
Track	FilteredModels2
ProteinId	598918

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:75132..76833 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598918	gene_7483	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598918	mRNA_7483-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7483	CDS_7483	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:75132..76833+
coding sequence from alignment at scaffold_20:75132..76833+

mRNA sequence

>mRNA_7483 ID=mRNA_7483|Name=jgi.p|Nanoce1779_2|598918|organism=Nannochloropsis oceanica|type=mRNA|length=1521bp
ACAGGACCCATGACAACAGCTGGCCGCAGGATATAGGCGCATCGACCCCT
GCACTAAGTACGCCTGCTCGCAATTTCGAAGAGCATGCTCTCAAGAAAAT
TTAGATGCCGTGACGTTCCTAGGCTCGCGGAGTTCCTGCTCACCAGAACG
TTTGACATAGTAGAGATATGCTTCCCTCCGGCTTTCTCGTCCATCCCAGG
TTCTTCTAGACAATGTCCAGTACCCTGGATGTGCTCACTTGAAGGCAGAG
TGGAATTGCAAGTGCGCCTTCTCTGACGCATATCAGCGATCGGATGCTGC
CCAAGTTGAGGGGCCTCCCGCCTCACGCAACCTTTTTCCCGAGCAAGCCG
TACTGCAGCATTAAAATTACAATGTACCGGTCAGCCTTCCTCTCAACTTC
TCCCATATACCCACCCATACCTCTCAATAGGAAAAACTTGACGTTGCGCG
CTCGGGCATTCCGAGCATGGGCAGTAGCACGCGACCCAGTGGGGGAGCAG
CAGGAGCACCACCAGGAGGCGGCGTTAGCCACGGGGGCTCTTTCCACTAC
CTCAATGCACAAAAGCGCATCCTGCGCGAGTATGCTAAAAATCATTTGGG
ATTGGGCGTCCGTTGGCGGTCGAGCTTGCGCGGGGTCAAGAGCTATCGGG
GCGTGCGCTTGGACGTGACTCCGTCTAGCCAGTGGACCCAGGAGGAGCTG
GATACCCTCTACGCGAAATGGGGCTTGGACCGACCGTCCCCTGAAGAGCT
CAAAGCCAAGACCTGCATGACCGTGCTGACTCGGGACAAGGTGCCCCCAC
CCCCACAACCACAAGATGAAGAAGAGGAAGACGGGCCTTTTCCACCGCCT
GCACATCCACGGTACACCCAGCCGCGACGCGTGGCGGCCCAACGCAACCG
TCTTGTGCAGGCTGAGGACATGCCATTGGACGAGGAGGAATACGAGGAGC
ACTCCCACGCCACCGACGTGGCCTCGAACATGTCGTCGCCGTCCCATTAT
TCGGGTGCGACGCGCGATCGGAACTTGAGTCTGTCTTCCTCTTCGCTATC
TTCCCTCCAAGGTGGACCTGCCACGGGGGCTGTGGGCAGCCGCAACCGCA
ACATTGTGTACTACGGTGAGAGCGATACTGACAGCATCTCAGAGGACGGT
GACGATGCGCATCTCCAGGGGCCTTCCAACGGCGGGGGTGGCCCAGCCCG
TCGTGCGAACACCGCAACCAAGGCCTCTGTCCCTTCTGCCACGGGCGCTG
GGAGGGTCACGTCTACCGCCAAGAGCACGGGCAGCGCGTGCTGCATGCAG
GGAGCGCAGGACCACAATAGAGTGGTGATGATGGATGAATTGGTGGGAGA
TTTTGGCGCGGAGCTCCTGCCCTTCTTGGGCTTCGAGATGGGACCCAATA
TCCTTGGTGTGGAAGGGGAAGAACAGGCATTGCCAACGCTTTTGGAGGGG
GAGCAGATGGATGTGGACAAGATGTGAAGGGAGGGAGGGAGGGAGGGAAC
CGTGTGTGCGTAATATTCTTT

protein sequence of jgi.p|Nanoce1779_2|598918

>mRNA_7483-protein ID=mRNA_7483-protein|Name=jgi.p|Nanoce1779_2|598918|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MGSSTRPSGGAAGAPPGGGVSHGGSFHYLNAQKRILREYAKNHLGLGVRW
RSSLRGVKSYRGVRLDVTPSSQWTQEELDTLYAKWGLDRPSPEELKAKTC
MTVLTRDKVPPPPQPQDEEEEDGPFPPPAHPRYTQPRRVAAQRNRLVQAE
DMPLDEEEYEEHSHATDVASNMSSPSHYSGATRDRNLSLSSSSLSSLQGG
PATGAVGSRNRNIVYYGESDTDSISEDGDDAHLQGPSNGGGGPARRANTA
TKASVPSATGAGRVTSTAKSTGSACCMQGAQDHNRVVMMDELVGDFGAEL
LPFLGFEMGPNILGVEGEEQALPTLLEGEQMDVDKM*

mRNA from alignment at scaffold_20:75132..76833+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7483 ID=mRNA_7483|Name=jgi.p|Nanoce1779_2|598918|organism=Nannochloropsis oceanica|type=mRNA|length=1702bp|location=Sequence derived from alignment at scaffold_20:75132..76833+ (Nannochloropsis oceanica)
ACAGGACCCATGACAACAGCTGGCCGCAGGATATAGGCGCATCGACCCCT
GCACTAAGTACGCCTGCTCGCAATTTCGAAGAGCATGCTCTCAAGAAAAT
TTAGATGCCGTGACGTTCCTAGGCTCGCGGAGTTCCTGCTCACCAGAACG
TTTGACATAGTAGAGATATGCTTCCCTCCGGCTTTCTCGTCCATCCCAGG
TTCTTCTAGACAATGTCCAGTACCCTGGATGTGCTCACTTGAAGGCAGAG
TGGAATTGCAAGTGCGCCTTCTCTGACGCATATCAGCGATCGGATGCTGC
CCAAGTTGAGGGGCCTCCCGCCTCACGCAACCTTTTTCCCGAGCAAGCCG
TACTGCAGCATTAAAATTACAATGTACCGGTCAGCCTTCCTCTCAACTTC
TCCCATATACCCACCCATACCTCTCAATAGGAAAAACTTGACGTTGCGCG
CTCGGGCATTCCGAGCATGGGCAGTAGCACGCGACCCAGTGGGGGAGCAG
CAGGAGCACCACCAGGAGGCGGCGTTAGCCACGGGGGCTCTTTCCACTAC
CTCAATGCACAAAAGCGCATCCTGCGCGAGTATGCTAAAAATCATTTGGG
ATTGGGCGTCCGTTGGCGGTCGAGCTTGCGCGGGGTCAAGAGCTATCGGG
GCGTGCGCTTGGACGTGACTCCGTCTAGCCAGTGGACCCAGGAGGAGCTG
GATACCCTCTACGCGAAATGGGGCTTGGACCGACCGTCCCCTGAAGAGCT
CAAAGCCAAGACCTGCATGACCGTGCTGACTCGGGACAAGGTGCCCCCAC
CCCCACAACCACAAGATGAAGAAGAGGAAGACGGGCCTTTTCCACCGCCT
GCACATCCACGGTACACCCAGCCGCGACGCGTGGCGGCCCAACGCAACCG
TCTTGTGCAGGCTGAGGACATGCCATTGGACGAGGAGGAATACGAGGAGC
ACTCCCACGCCACCGACGTGGCCTCGAACATGTCGTCGCCGTCCCATTAT
TCGGGTGCGACGCGCGATCGGAACTTGAGTCTGTCTTCCTCTTCGCTATC
TTCCCTCCAAGGTGGACCTGCCACGGGGGCTGTGGGCAGCCGCAACCGCA
ACATTGTGTACTACGGTGAGAGCGATACTGACAGCATCTCAGAGGACGGT
GACGATGCGCATCTCCAGGGGCCTTCCAACGGTATGTTTAAATTCGTGTG
GATCCCTCTTTTTAAATGTACGGCGCCTGCTCGAGGCGGCCCTGTTTGTT
ATGTTTAGTAGGATTTCTTATAATTTGCAATTCTAACGCCGGCACAAACA
TAATCTAGACTTAACTCATTGACCCCACATTCTCTCTCATTCTTTGCCCA
TTGTCCTAACAGGCGGGGGTGGCCCAGCCCGTCGTGCGAACACCGCAACC
AAGGCCTCTGTCCCTTCTGCCACGGGCGCTGGGAGGGTCACGTCTACCGC
CAAGAGCACGGGCAGCGCGTGCTGCATGCAGGGAGCGCAGGACCACAATA
GAGTGGTGATGATGGATGAATTGGTGGGAGATTTTGGCGCGGAGCTCCTG
CCCTTCTTGGGCTTCGAGATGGGACCCAATATCCTTGGTGTGGAAGGGGA
AGAACAGGCATTGCCAACGCTTTTGGAGGGGGAGCAGATGGATGTGGACA
AGATGTGAAGGGAGGGAGGGAGGGAGGGAACCGTGTGTGCGTAATATTCT
TT

Coding sequence (CDS) from alignment at scaffold_20:75132..76833+

>mRNA_7483 ID=mRNA_7483|Name=jgi.p|Nanoce1779_2|598918|organism=Nannochloropsis oceanica|type=CDS|length=2022bp|location=Sequence derived from alignment at scaffold_20:75132..76833+ (Nannochloropsis oceanica)
ATGGGCAGTAGCACGCGACCCAGTGGGGGAGCAGCAGGAGCACCACCAGG
AGGCGGCGTTAGCCACGGGGGCTCTTTCCACTACCTCAATGCACAAAAGC
GCATCCTGCGCGAGTATGCTAAAAATCATTTGGGATTGGGCGTCCGTTGG
CGGTCGAGCTTGCGCGGGGTCAAGAGCTATCGGGGCGTGCGCTTGGACGT
GACTCCGTCTAGCCAGTGGACCCAGGAGGAGCTGGATACCCTCTACGCGA
AATGGGGCTTGGACCGACCGTCCCCTGAAGAGCTCAAAGCCAAGACCTGC
ATGACCGTGCTGACTCGGGACAAGGTGCCCCCACCCCCACAACCACAAGA
TGAAGAAGAGGAAGACGGGCCTTTTCCACCGCCTGCACATCCACGGTACA
CCCAGCCGCGACGCGTGGCGGCCCAACGCAACCGTCTTGTGCAGGCTGAG
GACATGCCATTGGACGAGGAGGAATACGAGGAGCACTCCCACGCCACCGA
CGTGGCCTCGAACATGTCGTCGCCGTCCCATTATTCGGGTGCGACGCGCG
ATCGGAACTTGAGTCTGTCTTCCTCTTCGCTATCTTCCCTCCAAGGTGGA
CCTGCCACGGGGGCTGTGGGCAGCCGCAACCGCAACATTGTGTACTACGG
TGAGAGCGATACTGACAGCATCTCAGAGGACGGTGACGATGCGCATCTCC
AGGGGCCTTCCAACGGCGGGGGTGGCCCAGCCCGTCGTGCGAACACCGCA
ACCAAGGCCTCTGTCCCTTCTGCCACGGGCGCTGGGAGGGTCACGTCTAC
CGCCAAGAGCACGGGCAGCGCGTGCTGCATGCAGGGAGCGCAGGACCACA
ATAGAGTGGTGATGATGGATGAATTGGTGGGAGATTTTGGCGCGGAGCTC
CTGCCCTTCTTGGGCTTCGAGATGGGACCCAATATCCTTGGTGTGGAAGG
GGAAGAACAGGCATTGCCAACGCTTTTGGAGGGGGAGCAGATGGATGTGG
ACAAGATGTGAATGGGCAGTAGCACGCGACCCAGTGGGGGAGCAGCAGGA
GCACCACCAGGAGGCGGCGTTAGCCACGGGGGCTCTTTCCACTACCTCAA
TGCACAAAAGCGCATCCTGCGCGAGTATGCTAAAAATCATTTGGGATTGG
GCGTCCGTTGGCGGTCGAGCTTGCGCGGGGTCAAGAGCTATCGGGGCGTG
CGCTTGGACGTGACTCCGTCTAGCCAGTGGACCCAGGAGGAGCTGGATAC
CCTCTACGCGAAATGGGGCTTGGACCGACCGTCCCCTGAAGAGCTCAAAG
CCAAGACCTGCATGACCGTGCTGACTCGGGACAAGGTGCCCCCACCCCCA
CAACCACAAGATGAAGAAGAGGAAGACGGGCCTTTTCCACCGCCTGCACA
TCCACGGTACACCCAGCCGCGACGCGTGGCGGCCCAACGCAACCGTCTTG
TGCAGGCTGAGGACATGCCATTGGACGAGGAGGAATACGAGGAGCACTCC
CACGCCACCGACGTGGCCTCGAACATGTCGTCGCCGTCCCATTATTCGGG
TGCGACGCGCGATCGGAACTTGAGTCTGTCTTCCTCTTCGCTATCTTCCC
TCCAAGGTGGACCTGCCACGGGGGCTGTGGGCAGCCGCAACCGCAACATT
GTGTACTACGGTGAGAGCGATACTGACAGCATCTCAGAGGACGGTGACGA
TGCGCATCTCCAGGGGCCTTCCAACGGCGGGGGTGGCCCAGCCCGTCGTG
CGAACACCGCAACCAAGGCCTCTGTCCCTTCTGCCACGGGCGCTGGGAGG
GTCACGTCTACCGCCAAGAGCACGGGCAGCGCGTGCTGCATGCAGGGAGC
GCAGGACCACAATAGAGTGGTGATGATGGATGAATTGGTGGGAGATTTTG
GCGCGGAGCTCCTGCCCTTCTTGGGCTTCGAGATGGGACCCAATATCCTT
GGTGTGGAAGGGGAAGAACAGGCATTGCCAACGCTTTTGGAGGGGGAGCA
GATGGATGTGGACAAGATGTGA

Synonyms

Publications