jgi.p|Nanoce1779_2|531744, mRNA_7479 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|531744
Unique Name	mRNA_7479
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1143
Alignment location	scaffold_20:64875..66324 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	531830
Track	FilteredModels2
ProteinId	531744

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:64875..66324 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|531744	gene_7479	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|531744	mRNA_7479-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7479	CDS_7479	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:64875..66324+
coding sequence from alignment at scaffold_20:64875..66324+

mRNA sequence

>mRNA_7479 ID=mRNA_7479|Name=jgi.p|Nanoce1779_2|531744|organism=Nannochloropsis oceanica|type=mRNA|length=1143bp
ATGAAGGACGACTCGATCATCATGAAGGGGGACGCCGGGGCCAAGGCCAA
GGATTTTGCCGAATATTTCTGCTCCTACGCCTTCTTATATCACCAGAAAC
AAATGCTCACAGACCACCGGCGGATGTTTGCATATCATGAGGCTATTAGC
AAAAACGCAGAGGCCTTCAAGGGGAAGACCGTGGTGGATGTCGGCACAGG
GACGGGTGTTCTGGCTGTCTGGAGTGCCAAGGCAGGGGCGTCCCGGGTGC
TGGCAGTGGAATTTACGGACATGGCTAAAATGGCCAAGGTAATCGTAGCC
CGCAACGGCGTGAGCAACATCGTGGAAGTTCAGCAGGGCTCGGCGGAGGA
GATGGACGGGGTACAGCCGGGGTCGGTGGACATCATAGTCAGCGAGTGGA
TGGGATACTTCCTGCTAAGAGAAAGCATGCTCGACACGGTGGTGCGCGTT
CGTGAGAAGTACCTGAAGAAAGAGGGAGGGCACATGTTTCCGAGCCACGC
GACCATGTTCTGGTCCCTGGTCGAGGACGAACGGGAGCGGCAAGTTAAGG
CGCAGGAATACCACCAAGCCATCACTGACTGGCACGCCTTCACGTACGAA
ACGAAACAATTCTACGAGCTCGACATGGCCGGCCTCAGCTCCCAATACGA
GGAGGAACAAAGACAGTACTACCTTCTTTCTAGCGCATGGGCCGAGTTGC
GCGCGGAGCAAGTCGTCGGGACCCCCGTTCCGATCCTTTCGCTCGACCTG
AAGACCTGTACATTTGAAGACATCAAGGGCGTCCCAAAAACGCCATTCAA
GTTCATCATTCCGAAAGACAGGACCAACGGCGAAGGCCCTGTGCATGTCA
GTGGCTTTGCCGGGTGGTTTACCACAGACTTTTTTGGGAACGACCCTGCA
AAGCCCTTGCCCTGCCCGACCACATTAAGCACGGCGCCGGACATGGGATA
CACGCATTGGGGGCAGCAGGTGTTTCACCTCGTGAAGGGGTTGGAGTTGA
ACCCGGGGGACGTACTGGAGGGGACTGTGAGCATGGGAAGGCAGGAGGAG
AACGCCCGGTTGTATGAGGTGGAGGTGGCGTTTTACGTGGTGAGGGAGGG
ATTGGCGTCTGAGTATGTGGCACACAAGTACCAGATGCCATGA

protein sequence of jgi.p|Nanoce1779_2|531744

>mRNA_7479-protein ID=mRNA_7479-protein|Name=jgi.p|Nanoce1779_2|531744|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MKDDSIIMKGDAGAKAKDFAEYFCSYAFLYHQKQMLTDHRRMFAYHEAIS
KNAEAFKGKTVVDVGTGTGVLAVWSAKAGASRVLAVEFTDMAKMAKVIVA
RNGVSNIVEVQQGSAEEMDGVQPGSVDIIVSEWMGYFLLRESMLDTVVRV
REKYLKKEGGHMFPSHATMFWSLVEDERERQVKAQEYHQAITDWHAFTYE
TKQFYELDMAGLSSQYEEEQRQYYLLSSAWAELRAEQVVGTPVPILSLDL
KTCTFEDIKGVPKTPFKFIIPKDRTNGEGPVHVSGFAGWFTTDFFGNDPA
KPLPCPTTLSTAPDMGYTHWGQQVFHLVKGLELNPGDVLEGTVSMGRQEE
NARLYEVEVAFYVVREGLASEYVAHKYQMP*

mRNA from alignment at scaffold_20:64875..66324+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7479 ID=mRNA_7479|Name=jgi.p|Nanoce1779_2|531744|organism=Nannochloropsis oceanica|type=mRNA|length=1450bp|location=Sequence derived from alignment at scaffold_20:64875..66324+ (Nannochloropsis oceanica)
ATGAAGGACGACTCGATCATCATGAAGGGGGACGCCGGGGCCAAGGCCAA
GGATTTTGCCGAATATTTCTGCTCCTACGCCTTCTTATATCACCAGGTAA
GCCATGGGAGCGAGGTCAAAATCCCATTCATGCCTCCCTTCCTCCCTCCG
TTCCGCCAGCGAGGGCGTGTGCCCCCCCTTATTTCCTCATCCCCTCTCTT
CCTCCCTGTAGAAACAAATGCTCACAGACCACCGGCGGATGTTTGCATAT
CATGAGGCTATTAGCAAAAACGCAGAGGCCTTCAAGGGGAAGACCGTGGT
GGATGTCGGCACAGGGACGGGTGTTCTGGCTGTCTGGAGTGCCAAGGCAG
GGGCGTCCCGGGTGCTGGCAGTGGAATTTACGGGTAAATGAGGGAGAGAA
TGAGGGCAAACTTATCCTGCAGTGCTGACTTTCGAAGTGATCACTCTTTT
ATCTACGTCTGTCAAGACGTTGTCTTGTTTCTCTTGTCAGAGAGTCACGC
CAGCAACGCACAGACCTTACCCACCCCTCCCTATCTCTCTCCCTCCCTCC
CTCCCTTCCTTCCCCCTCCCCTCAGACATGGCTAAAATGGCCAAGGTAAT
CGTAGCCCGCAACGGCGTGAGCAACATCGTGGAAGTTCAGCAGGGCTCGG
CGGAGGAGATGGACGGGGTACAGCCGGGGTCGGTGGACATCATAGTCAGC
GAGTGGATGGGATACTTCCTGCTAAGAGAAAGCATGCTCGACACGGTGGT
GCGCGTTCGTGAGAAGTACCTGAAGAAAGAGGGAGGGCACATGTTTCCGA
GCCACGCGACCATGTTCTGGTCCCTGGTCGAGGACGAACGGGAGCGGCAA
GTTAAGGCGCAGGAATACCACCAAGCCATCACTGACTGGCACGCCTTCAC
GTACGAAACGAAACAATTCTACGAGCTCGACATGGCCGGCCTCAGCTCCC
AATACGAGGAGGAACAAAGACAGTACTACCTTCTTTCTAGCGCATGGGCC
GAGTTGCGCGCGGAGCAAGTCGTCGGGACCCCCGTTCCGATCCTTTCGCT
CGACCTGAAGACCTGTACATTTGAAGACATCAAGGGCGTCCCAAAAACGC
CATTCAAGTTCATCATTCCGAAAGACAGGACCAACGGCGAAGGCCCTGTG
CATGTCAGTGGCTTTGCCGGGTGGTTTACCACAGACTTTTTTGGGAACGA
CCCTGCAAAGCCCTTGCCCTGCCCGACCACATTAAGCACGGCGCCGGACA
TGGGATACACGCATTGGGGGCAGCAGGTGTTTCACCTCGTGAAGGGGTTG
GAGTTGAACCCGGGGGACGTACTGGAGGGGACTGTGAGCATGGGAAGGCA
GGAGGAGAACGCCCGGTTGTATGAGGTGGAGGTGGCGTTTTACGTGGTGA
GGGAGGGATTGGCGTCTGAGTATGTGGCACACAAGTACCAGATGCCATGA

Coding sequence (CDS) from alignment at scaffold_20:64875..66324+

>mRNA_7479 ID=mRNA_7479|Name=jgi.p|Nanoce1779_2|531744|organism=Nannochloropsis oceanica|type=CDS|length=3429bp|location=Sequence derived from alignment at scaffold_20:64875..66324+ (Nannochloropsis oceanica)
ATGAAGGACGACTCGATCATCATGAAGGGGGACGCCGGGGCCAAGGCCAA
GGATTTTGCCGAATATTTCTGCTCCTACGCCTTCTTATATCACCAGAAAC
AAATGCTCACAGACCACCGGCGGATGTTTGCATATCATGAGGCTATTAGC
AAAAACGCAGAGGCCTTCAAGGGGAAGACCGTGGTGGATGTCGGCACAGG
GACGGGTGTTCTGGCTGTCTGGAGTGCCAAGGCAGGGGCGTCCCGGGTGC
TGGCAGTGGAATTTACGGACATGGCTAAAATGGCCAAGGTAATCGTAGCC
CGCAACGGCGTGAGCAACATCGTGGAAGTTCAGCAGGGCTCGGCGGAGGA
GATGGACGGGGTACAGCCGGGGTCGGTGGACATCATAGTCAGCGAGTGGA
TGGGATACTTCCTGCTAAGAGAAAGCATGCTCGACACGGTGGTGCGCGTT
CGTGAGAAGTACCTGAAGAAAGAGGGAGGGCACATGTTTCCGAGCCACGC
GACCATGTTCTGGTCCCTGGTCGAGGACGAACGGGAGCGGCAAGTTAAGG
CGCAGGAATACCACCAAGCCATCACTGACTGGCACGCCTTCACGTACGAA
ACGAAACAATTCTACGAGCTCGACATGGCCGGCCTCAGCTCCCAATACGA
GGAGGAACAAAGACAGTACTACCTTCTTTCTAGCGCATGGGCCGAGTTGC
GCGCGGAGCAAGTCGTCGGGACCCCCGTTCCGATCCTTTCGCTCGACCTG
AAGACCTGTACATTTGAAGACATCAAGGGCGTCCCAAAAACGCCATTCAA
GTTCATCATTCCGAAAGACAGGACCAACGGCGAAGGCCCTGTGCATGTCA
GTGGCTTTGCCGGGTGGTTTACCACAGACTTTTTTGGGAACGACCCTGCA
AAGCCCTTGCCCTGCCCGACCACATTAAGCACGGCGCCGGACATGGGATA
CACGCATTGGGGGCAGCAGGTGTTTCACCTCGTGAAGGGGTTGGAGTTGA
ACCCGGGGGACGTACTGGAGGGGACTGTGAGCATGGGAAGGCAGGAGGAG
AACGCCCGGTTGTATGAGGTGGAGGTGGCGTTTTACGTGGTGAGGGAGGG
ATTGGCGTCTGAGTATGTGGCACACAAGTACCAGATGCCATGAATGAAGG
ACGACTCGATCATCATGAAGGGGGACGCCGGGGCCAAGGCCAAGGATTTT
GCCGAATATTTCTGCTCCTACGCCTTCTTATATCACCAGAAACAAATGCT
CACAGACCACCGGCGGATGTTTGCATATCATGAGGCTATTAGCAAAAACG
CAGAGGCCTTCAAGGGGAAGACCGTGGTGGATGTCGGCACAGGGACGGGT
GTTCTGGCTGTCTGGAGTGCCAAGGCAGGGGCGTCCCGGGTGCTGGCAGT
GGAATTTACGGACATGGCTAAAATGGCCAAGGTAATCGTAGCCCGCAACG
GCGTGAGCAACATCGTGGAAGTTCAGCAGGGCTCGGCGGAGGAGATGGAC
GGGGTACAGCCGGGGTCGGTGGACATCATAGTCAGCGAGTGGATGGGATA
CTTCCTGCTAAGAGAAAGCATGCTCGACACGGTGGTGCGCGTTCGTGAGA
AGTACCTGAAGAAAGAGGGAGGGCACATGTTTCCGAGCCACGCGACCATG
TTCTGGTCCCTGGTCGAGGACGAACGGGAGCGGCAAGTTAAGGCGCAGGA
ATACCACCAAGCCATCACTGACTGGCACGCCTTCACGTACGAAACGAAAC
AATTCTACGAGCTCGACATGGCCGGCCTCAGCTCCCAATACGAGGAGGAA
CAAAGACAGTACTACCTTCTTTCTAGCGCATGGGCCGAGTTGCGCGCGGA
GCAAGTCGTCGGGACCCCCGTTCCGATCCTTTCGCTCGACCTGAAGACCT
GTACATTTGAAGACATCAAGGGCGTCCCAAAAACGCCATTCAAGTTCATC
ATTCCGAAAGACAGGACCAACGGCGAAGGCCCTGTGCATGTCAGTGGCTT
TGCCGGGTGGTTTACCACAGACTTTTTTGGGAACGACCCTGCAAAGCCCT
TGCCCTGCCCGACCACATTAAGCACGGCGCCGGACATGGGATACACGCAT
TGGGGGCAGCAGGTGTTTCACCTCGTGAAGGGGTTGGAGTTGAACCCGGG
GGACGTACTGGAGGGGACTGTGAGCATGGGAAGGCAGGAGGAGAACGCCC
GGTTGTATGAGGTGGAGGTGGCGTTTTACGTGGTGAGGGAGGGATTGGCG
TCTGAGTATGTGGCACACAAGTACCAGATGCCATGAATGAAGGACGACTC
GATCATCATGAAGGGGGACGCCGGGGCCAAGGCCAAGGATTTTGCCGAAT
ATTTCTGCTCCTACGCCTTCTTATATCACCAGAAACAAATGCTCACAGAC
CACCGGCGGATGTTTGCATATCATGAGGCTATTAGCAAAAACGCAGAGGC
CTTCAAGGGGAAGACCGTGGTGGATGTCGGCACAGGGACGGGTGTTCTGG
CTGTCTGGAGTGCCAAGGCAGGGGCGTCCCGGGTGCTGGCAGTGGAATTT
ACGGACATGGCTAAAATGGCCAAGGTAATCGTAGCCCGCAACGGCGTGAG
CAACATCGTGGAAGTTCAGCAGGGCTCGGCGGAGGAGATGGACGGGGTAC
AGCCGGGGTCGGTGGACATCATAGTCAGCGAGTGGATGGGATACTTCCTG
CTAAGAGAAAGCATGCTCGACACGGTGGTGCGCGTTCGTGAGAAGTACCT
GAAGAAAGAGGGAGGGCACATGTTTCCGAGCCACGCGACCATGTTCTGGT
CCCTGGTCGAGGACGAACGGGAGCGGCAAGTTAAGGCGCAGGAATACCAC
CAAGCCATCACTGACTGGCACGCCTTCACGTACGAAACGAAACAATTCTA
CGAGCTCGACATGGCCGGCCTCAGCTCCCAATACGAGGAGGAACAAAGAC
AGTACTACCTTCTTTCTAGCGCATGGGCCGAGTTGCGCGCGGAGCAAGTC
GTCGGGACCCCCGTTCCGATCCTTTCGCTCGACCTGAAGACCTGTACATT
TGAAGACATCAAGGGCGTCCCAAAAACGCCATTCAAGTTCATCATTCCGA
AAGACAGGACCAACGGCGAAGGCCCTGTGCATGTCAGTGGCTTTGCCGGG
TGGTTTACCACAGACTTTTTTGGGAACGACCCTGCAAAGCCCTTGCCCTG
CCCGACCACATTAAGCACGGCGCCGGACATGGGATACACGCATTGGGGGC
AGCAGGTGTTTCACCTCGTGAAGGGGTTGGAGTTGAACCCGGGGGACGTA
CTGGAGGGGACTGTGAGCATGGGAAGGCAGGAGGAGAACGCCCGGTTGTA
TGAGGTGGAGGTGGCGTTTTACGTGGTGAGGGAGGGATTGGCGTCTGAGT
ATGTGGCACACAAGTACCAGATGCCATGA

Synonyms

Publications