jgi.p|Nanoce1779_2|598899, mRNA_7477 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598899
Unique NamemRNA_7477
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1202
Alignment locationscaffold_20:59963..61164 -

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Properties
Property NameValue
TranscriptId598985
TrackFilteredModels2
ProteinId598899
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:59963..61164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598899gene_7477Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598899mRNA_7477-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7477CDS_7477Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7477 ID=mRNA_7477|Name=jgi.p|Nanoce1779_2|598899|organism=Nannochloropsis oceanica|type=mRNA|length=1202bp
CAGGCGGCGGCATGAATGCCATGGACTCCTCATCCTCAAGCGTCTCGAGC
ATGTCGACGGTCTCGCATGGTGGTGCGGCCGCGGAGGCCCAGCGGTGGGA
GGAGCCGGAGCACATCAAGGTATTCAATGAGTACAAGCTCTACGCCACGT
GCGGCATCCCGCGCAAGTAGCACGCGGTATGGAAGAAGCGGTGCTACTTC
TGCAGCCACCACAAGGACCACAAGAAGGACGTCTACTGCATCTACTGGGC
TGCGTGTCGCTCGACCTGTGGACGGACATAACGCAGATGGAGTGGGCGTG
CTCCTCCACACCACCATGAAGACGAGTGACGGGTACGAGCAGAGGGAGAT
CTGCCTTGCCTGCACGAAGGTGGACAAGAAGCACATCACGGCCGAGGTGG
TGCAGCAGTACCTGGAGACGACCCTCAAGAACTTTGGCCTCCCCGTCAAG
TCCATCTTCTGCGCCTTCCACGACGGCGACGCGAAGGTAATCATATGCGT
CCGTGATGCTGACCTGCGCTCCTCGCTCTGTTTCATTCGCAGCCTGCAGC
GTACCATCGCCGTATCTTTCAAGGGAGCGAATGCAGCCCTGGCTGTACTC
AAGCGGACGAAGAAGGCCGTCACGGGCGCCCGCCAGAGCAACGTGCAGGC
GGCGTACCTGCGGGACGCCCAGGTGTCCATCGGCGCCCCGCAGCGTGCCC
TCATACAGGATAACCAGACGCGGTGGGGTTCAACGCACGACATGGCGGAG
CGCGCAACGGAGCAGGAGGGGGCCTTCCCCGCGGCGTACGGGCTAGACGA
CGACCGTAACCGCGCTTTCTCCAAGAAGGTCTTCGACCCGGAGAAGAGAC
TGTAGCCGGGGGACTTCTCCCTCCTGGGCGAAATCGTGACTGTCTACAAC
CCCTTTCGCCAATTGACCACGGAGCTGCAGTCGGCAGGGATCACCACCTC
TCTCGTCGTGCCCGCCTATTTGCAGCTGGTGGACGGCCTCCAGGCGTACA
GCGAGATCGTGGTGGAGATGCCCCTCGCCGGCACCAGCTACCCCGCCACG
TCTGTATGCAAGCCGGTGAGTGAGCTGGATGCCTCGGAGCAGAGGATCGT
AGCGCAGGCGCGCGTGGACTTGATGGAGGAGGAGGAGGAGGAGGAGGAGG
GCAAGGATGGGGGTGAAAAGGAAGATGACGAGGATGTGGAGGAACAGTGG
GC
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protein sequence of jgi.p|Nanoce1779_2|598899

>mRNA_7477-protein ID=mRNA_7477-protein|Name=jgi.p|Nanoce1779_2|598899|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MPWTPHPQASRACRRSRMVVRPRRPSGGRSRSTSRYSMSTSSTPRAASRA
SSTRYGRSGATSAATTRTTRRTSTASTGLRVARPVDGHNADGVGVLLHTT
MKTSDGYEQREICLACTKVDKKHITAEVVQQYLETTLKNFGLPVKSIFCA
FHDGDAKVIICVRDADLRSSLCFIRSLQRTIAVSFKGANAALAVLKRTKK
AVTGARQSNVQAAYLRDAQVSIGAPQRALIQDNQTRWGSTHDMAERATEQ
EGAFPAAYGLDDDRNRAFSKKVFDPEKRL*
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mRNA from alignment at scaffold_20:59963..61164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7477 ID=mRNA_7477|Name=jgi.p|Nanoce1779_2|598899|organism=Nannochloropsis oceanica|type=mRNA|length=1202bp|location=Sequence derived from alignment at scaffold_20:59963..61164- (Nannochloropsis oceanica)
CAGGCGGCGGCATGAATGCCATGGACTCCTCATCCTCAAGCGTCTCGAGC
ATGTCGACGGTCTCGCATGGTGGTGCGGCCGCGGAGGCCCAGCGGTGGGA
GGAGCCGGAGCACATCAAGGTATTCAATGAGTACAAGCTCTACGCCACGT
GCGGCATCCCGCGCAAGTAGCACGCGGTATGGAAGAAGCGGTGCTACTTC
TGCAGCCACCACAAGGACCACAAGAAGGACGTCTACTGCATCTACTGGGC
TGCGTGTCGCTCGACCTGTGGACGGACATAACGCAGATGGAGTGGGCGTG
CTCCTCCACACCACCATGAAGACGAGTGACGGGTACGAGCAGAGGGAGAT
CTGCCTTGCCTGCACGAAGGTGGACAAGAAGCACATCACGGCCGAGGTGG
TGCAGCAGTACCTGGAGACGACCCTCAAGAACTTTGGCCTCCCCGTCAAG
TCCATCTTCTGCGCCTTCCACGACGGCGACGCGAAGGTAATCATATGCGT
CCGTGATGCTGACCTGCGCTCCTCGCTCTGTTTCATTCGCAGCCTGCAGC
GTACCATCGCCGTATCTTTCAAGGGAGCGAATGCAGCCCTGGCTGTACTC
AAGCGGACGAAGAAGGCCGTCACGGGCGCCCGCCAGAGCAACGTGCAGGC
GGCGTACCTGCGGGACGCCCAGGTGTCCATCGGCGCCCCGCAGCGTGCCC
TCATACAGGATAACCAGACGCGGTGGGGTTCAACGCACGACATGGCGGAG
CGCGCAACGGAGCAGGAGGGGGCCTTCCCCGCGGCGTACGGGCTAGACGA
CGACCGTAACCGCGCTTTCTCCAAGAAGGTCTTCGACCCGGAGAAGAGAC
TGTAGCCGGGGGACTTCTCCCTCCTGGGCGAAATCGTGACTGTCTACAAC
CCCTTTCGCCAATTGACCACGGAGCTGCAGTCGGCAGGGATCACCACCTC
TCTCGTCGTGCCCGCCTATTTGCAGCTGGTGGACGGCCTCCAGGCGTACA
GCGAGATCGTGGTGGAGATGCCCCTCGCCGGCACCAGCTACCCCGCCACG
TCTGTATGCAAGCCGGTGAGTGAGCTGGATGCCTCGGAGCAGAGGATCGT
AGCGCAGGCGCGCGTGGACTTGATGGAGGAGGAGGAGGAGGAGGAGGAGG
GCAAGGATGGGGGTGAAAAGGAAGATGACGAGGATGTGGAGGAACAGTGG
GC
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Coding sequence (CDS) from alignment at scaffold_20:59963..61164-

>mRNA_7477 ID=mRNA_7477|Name=jgi.p|Nanoce1779_2|598899|organism=Nannochloropsis oceanica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_20:59963..61164- (Nannochloropsis oceanica)
ATGCCATGGACTCCTCATCCTCAAGCGTCTCGAGCATGTCGACGGTCTCG
CATGGTGGTGCGGCCGCGGAGGCCCAGCGGTGGGAGGAGCCGGAGCACAT
CAAGGTATTCAATGAGTACAAGCTCTACGCCACGTGCGGCATCCCGCGCA
AGTAGCACGCGGTATGGAAGAAGCGGTGCTACTTCTGCAGCCACCACAAG
GACCACAAGAAGGACGTCTACTGCATCTACTGGGCTGCGTGTCGCTCGAC
CTGTGGACGGACATAACGCAGATGGAGTGGGCGTGCTCCTCCACACCACC
ATGAAGACGAGTGACGGGTACGAGCAGAGGGAGATCTGCCTTGCCTGCAC
GAAGGTGGACAAGAAGCACATCACGGCCGAGGTGGTGCAGCAGTACCTGG
AGACGACCCTCAAGAACTTTGGCCTCCCCGTCAAGTCCATCTTCTGCGCC
TTCCACGACGGCGACGCGAAGGTAATCATATGCGTCCGTGATGCTGACCT
GCGCTCCTCGCTCTGTTTCATTCGCAGCCTGCAGCGTACCATCGCCGTAT
CTTTCAAGGGAGCGAATGCAGCCCTGGCTGTACTCAAGCGGACGAAGAAG
GCCGTCACGGGCGCCCGCCAGAGCAACGTGCAGGCGGCGTACCTGCGGGA
CGCCCAGGTGTCCATCGGCGCCCCGCAGCGTGCCCTCATACAGGATAACC
AGACGCGGTGGGGTTCAACGCACGACATGGCGGAGCGCGCAACGGAGCAG
GAGGGGGCCTTCCCCGCGGCGTACGGGCTAGACGACGACCGTAACCGCGC
TTTCTCCAAGAAGGTCTTCGACCCGGAGAAGAGACTGTAG
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Synonyms
Publications