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Properties
| Property Name | Value |
|---|
| TranscriptId | 598979 |
| Track | FilteredModels2 |
| ProteinId | 598893 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:54601..59522 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7476 ID=mRNA_7476|Name=jgi.p|Nanoce1779_2|598893|organism=Nannochloropsis oceanica|type=mRNA|length=1913bp
AAAACAATCCATTGCAGAAACAACCACAGGCACAAGATGGCACTAGTCAA
GATCTGCCTGCTAGCCGGCCTCGTAGCGCCTTTGTCCCTTGTCCAGGGCT
TTCACAAACCCATTCCGCGCTTCACCGTCCCGCACCGCCCTTACCACAAT
CACCGCCCCGTCTCCTTCTCCTCCTCAAGCCTCTCTCAAGTCCCTCCTCC
TAAACCATCCGCTTCAGTATATTCAAGCCGCCCTGCTACCTCTCTCCTCA
GCCTCCAGGCCTGGCCCCAGACCCGCGACCCCAAACCCGCCCCAGCCGAC
TACCCACTGGCCGCCGCCCGCATCTCCATTACCGTCATCGCCTGTCTTCT
GACCTCATACGCCCACTCCTCCACCGATGCAATCTGCTCCAGCCCCGTCT
TGGCCAGCGCAGCTGTCACACTTGCTGGTTCGCTCATCAGTCCAGGCCTG
GGCCAAGCCGCCATGTGTGGCTCTTTTGCAGGCATGTCTTCTTCGCTTCT
CCTCCCCACCTTTTCCTGGACCCTGTTGACGGGACTGGTGACATCTGTGT
TGTTCGAGGCCTTCATTCACTATCGCAATGCGGCATTGGGCTTGGGGGGC
CGGCTTGGCACCATTGCATTCGTATCTGTGAATTTCGTGTCGGCCCTTCG
TGGGATTTGGGTGCTTCCTGCCCTTCCTTCTTCCCTTCCACCCCTTCCTA
CCCTTTCTACTTTTGCAGCCTCAATTGCAGCCTTCCCTGACGTTTCCGTA
GCAACACTGGCGTCATTGAAGACGTTTGTGGCATCCTCGCCGTATCTCCC
CCTGACCATGGGGTACGGTGTTGTGGGGGCCCTTGCAACTATTGCCCTTC
GAGAAGCCTCAGATGATAGTGCCGCGGCAGACCCTGTACGTGCAGCAGCT
GTAGTTGGTTTGTTGAGTGCACTGATGGTAGGCGTGGGAGGACACACGAG
CCTGGGGGCGCTGGCTGCTTATGGAGGAGCGTTTGTAGGCATGTCTTTAC
CTTCGCGGTTAATGTACGGGTCACAACCGCCTCTTCCCGGCTCTTCACCC
TCGGATGCTGCGCCTCTTACCAGGCCGACGACCCCACGAAACGTCTTGAC
GAATTTTGCCATTGCTGGTTTGTTGGGCGGATTGGTACACGGCCTAACCC
TTCATTGGGGGATGTGGACGACGCCGGTCGCGGCATGGGGCGGAAAGGCG
GGTTTTTGTGCGTTTGTGGGCGTGTTGCTTCACCGGGGAATGCTGCGTGG
ATTGGATGGTTTGGAAAAGCTGGGGAGGAAATTGATGCGGTCGGTTGCTG
GGAAGGAGAAGTAGAAAACGTAGTGGAAGAGGTCGAGGTGACTATTTCAA
GAATGAGGATGTATGTCTGGACGGTGGTGCCGATGAGAGGATGGTTGTAA
AAATGTGAGAGGACGAGGATGGAATGATGAGTTTCCTGCTCTTGCTGTCG
CTGCTGCTGCTGCTGCCGCTGCGGCCGCTGCTGTCGCTGCTGCTGCGTGG
GCGACTTGTTTGTCTGCTGATGGGGGAAATGGAGGGGTTAGGGATAAATT
GGGACGATGAAGGGAAGGGACGGGTTACAGTCAAATGGTGTGTACGCAAA
GGATAGGGCGGAGGAAAATTATCTTTGACGTATGTTTTAATATGAAAGGT
TTAAAAAAAAAAATACAGAAAAAAGTGTCGCTAGGAGAGGTTTGGTGGAG
GCAGCCAGCGGCGGCTGCTCCCAGGCCCTCAATAGCTTGCACATATGCGG
AGTACTCTCACAGTAAGAAGAAAGAAAAAGAAAACAATTTTGTCCGGAGA
TTTATTGAAAAGGGCTACGTAATGCTTTGTTAAAATCTAAAGACAAAAGA
TGGGGGGGGGGAAGCCTTCCGAACTCGCAAACCTCGAGTTCACCGCTGAA
CTCGAGATCAGGG back to topprotein sequence of jgi.p|Nanoce1779_2|598893 >mRNA_7476-protein ID=mRNA_7476-protein|Name=jgi.p|Nanoce1779_2|598893|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MALVKICLLAGLVAPLSLVQGFHKPIPRFTVPHRPYHNHRPVSFSSSSLS
QVPPPKPSASVYSSRPATSLLSLQAWPQTRDPKPAPADYPLAAARISITV
IACLLTSYAHSSTDAICSSPVLASAAVTLAGSLISPGLGQAAMCGSFAGM
SSSLLLPTFSWTLLTGLVTSVLFEAFIHYRNAALGLGGRLGTIAFVSVNF
VSALRGIWVLPALPSSLPPLPTLSTFAASIAAFPDVSVATLASLKTFVAS
SPYLPLTMGYGVVGALATIALREASDDSAAADPVRAAAVVGLLSALMVGV
GGHTSLGALAAYGGAFVGMSLPSRLMYGSQPPLPGSSPSDAAPLTRPTTP
RNVLTNFAIAGLLGGLVHGLTLHWGMWTTPVAAWGGKAGFCAFVGVLLHR
GMLRGLDGLEKLGRKLMRSVAGKEK* back to topmRNA from alignment at scaffold_20:54601..59522+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7476 ID=mRNA_7476|Name=jgi.p|Nanoce1779_2|598893|organism=Nannochloropsis oceanica|type=mRNA|length=4922bp|location=Sequence derived from alignment at scaffold_20:54601..59522+ (Nannochloropsis oceanica)
AAAACAATCCATTGCAGAACTGCTCTTACCTTAATCCGCAACGTGGGAAT
GCTCGCCACATAGAAGGCATGGTCGATGTATGCATATATCCCCAGAATCT
TGCTCGCTAAGAGTGCATCCTCCCCAAAAAAACGAAAACGGTACCCGCAC
TCAATCAACAGCATGGTGTCCGGATGCGCCCTCTTCAACCCAAGCACCTG
CTGCTCCAACGGCGTGAATCTCTGGGCGGTAGCAGCCGCAGCGGCAGCAG
CAGAGGAGGATTTAGTCTTGCCTTTCCCCTTGACAGGAGCGATGGTTTCA
GGTGCTGCTAGTAAAGCTTGCATCCGCCCCTTGCCCCCTCCCTCCTTCCT
GACTTCCCCCCCTTCCTCGTCCTCAGCCTCCTCTTCCTCCCGAGTGGCCT
TGGCGAGCTTCCTGACGAATCGCTCGTGACGTTGCGTCGAGGGAATGATG
GCCATCATTTTATGTTTGATTGATAAAGGAACGGCAGCCTTAGAAGAAGA
AGAGGAGGACAGTTGGGGAGATTTAGCGGTGGACCCGGAAGGGGAGGAGG
ACAAGGAGGAAAAGGAGGAGAGAGGACTCTTTCCCTTGCTCCCGGCACCA
TCTTGCTCCATGATTAGCACCTCGTCATCGTCATCTTCCACTTCTTTCTC
TTCGTCGTCATCATCATTCTCATCCTCATCTGTCTCCTTGTAACTGTTCT
TCCTTTCGCCCGAGGTCGTAGTCCGCAGGTGTGAGAGACGAGGACGCTTG
TTAGGTGGACCTGCTGATGCAGCACCAGCACCGTTGACACCATCACCACC
ACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAGCAACAG
AGGAAGAAGAACGGGAGAGAGATGGAGAGGGGCTTGGTCTCAGGTCAGAG
GCCGGCTTCTTCTGCCGCTTGGGTGGATGATGCGGAGAGTGGAGGAGAGG
GGTGGTGCTGGAGGAAGAGGAGGATGAGGAGCTTGACGAGGAAGGGTTTG
GCGTGCCCGTGGCGGCTTTGCGGAAAAAGCGGCTGATGGAGGTCTGGGAG
GACATCTTGGGGGGTAATTGCGCTACTTTCTGTGTGCGCTGGTGTGACCA
ACTCGCAGGAATAAGCGTGGAGCCAAGACAGCAGAGGTTTGGCAAGGAGG
CGGGAGGCTGACGTTACTTACTAGAGAGAGCCTAGACAGCACGTGCGTGA
GCAACTTGTATCACCAGCGTCCTGTCATGTGGAGGGGGTGTGAGTGAGTT
GGAAGAGTAGTGGTGTGCATGTGACCGCTGTTTGGGAAAGAAGGAGACAA
GGAAAAATCGCCGAAAAAAGGTGTAGCTTCACGATTTCACGTTCCCATCT
TACCCATCTACAAATAAAGTCCAAGCTAAGCTGGACGCCACCTAACCAAC
CGGAGACATATGAAGAGAAGTGTATTCATCGTTATTTTACATTCTAGTGC
TGGTTTAATGTTTCGTGGATGCTTTGTTCCATGTTTCGAGGCTTAAATGG
ATTAAGTGGGTCGAACAAAATTACATCTGGCAAATGCAAGGATTTATTAT
AAGGACGAGCTAAATCGATTAAAAGAGCACCATGAAAGTGGGACAGACGC
CTTCGAAAATCTGATCAAGCTAGGAAATGAACGAAATTGTGTAAAAATGG
AAAAAAAAAAACAAGAAACCAACTAGGCGATAGCACCCTACATAAATCTA
ATTGTTCTTCGAGAATGCTTCACCATACTCGGCGCACTTATATCCGGTTT
ACTCATCCAGTCAAGCTTCTTTCCTTCTGTAAAATTCCTTTGCCCTTAAT
TCTTCCCTCGCTCTCTTCTACCCTTCCTTCCCCCCTCATTCCTCCAATCT
TCCTCCGAGCAACTCCCCTCTCTAGCAGCCTCCCGATTAAAACTTGCGAC
TCTTCATCTTATTTGAGTCCTTCATATACATGTCATAAGAAGTCTTCTGA
TCCGGGTCCACCCCCACAACCTCCGGCTGCGGTCCATACAACCACCATCC
CAGCAACCCGAAAATAGGAATGAACAAACCAGCAAAGATAATCGGCACTA
TCGGATCGTTTTTATTGGCGAAATACTCGGTGGCAGGGACAATGACGTCT
TCGTTTTTCTCAACCACCGTGTTCTGACCGTATTTCATGGGAGTCGCCCT
TTTTGAGGCAGGTCGAGAAGGGGGAGCGCCCTTCCTGCCGCCTTTGGCAG
CTACTGGTGCGGCTGCGGGTGTCTCGACGGCCTTCTTCTTGCCACCCCAG
AGATGGAGGCGAGTGGAGGAGGGCTTAGCGGTGAGGGAAGCGAAGGAGGA
AGAGAAGGAGGAGCGAGGAGTGGTGGGGACAAAGGCAGTGGCGACGCTTA
GGAAAGTGACCAGGAGAAGGAGGAATAGCTGGGGACCGCTCATCTTTTGT
CCAGGGAAGCTGTGTTTCTTAGGTGCCTGTTGCTTGTATCTGTGTTTGAA
GAGAAGGTGTGTTTGAATGATGTGTACGGAGTGGAGCTGAAGCATCATTG
CGTGGGCATGATGGCATGCTTCTCGAGGCAACGAAAGCACTTTGTTGCGG
CCGTCATGTTTTGCAGAGCGCTTTGTCTTTCTTTACTAGATAAATAGGGA
TAATTCAGGTGGAGGAGCATGGCTTGTGAGGCTGCCGAGACTGGTGTGGG
TGGTCACTGCGTCATGTACACGTCACTTCTTGATCTTCGGGTTTTGACAC
CGGAGAGCAAGGGATTGAGGGGTTGACAAAGAGGTGGCATACAATCGATC
GGGGTTGGGCGGTCCACCCCCACCGCCACCACCTTGAGGAAATCTCGGCG
CTGGCAGATTTTGGCATGTGTTTGTGAGTTGTGATGGGTAGGCTGTGATG
CGCACTGTGCGTACACAGGCATGATGGGAATATGACGCATGAACACGATC
CAGCTGCCAGCGTCCAGTGTCTCCGAAGAGTCGGAACGTTGCTTGCTGCT
TCTTTGAGCGGCCTTCATCGCTTGCTTGTTTCAATGAAATGGTAGCACAT
GGTTAACATAACCATGCCATACGTATGCACAACCACAGGCACAAGATGGC
ACTAGTCAAGATCTGCCTGCTAGCCGGCCTCGTAGCGCCTTTGTCCCTTG
TCCAGGGCTTTCACAAACCCATTCCGCGCTTCACCGTCCCGCACCGCCCT
TACCACAATCACCGCCCCGTCTCCTTCTCCTCCTCAAGCCTCTCTCAAGT
CCCTCCTCCTAAACCATCCGCTTCAGTATATTCAAGCCGCCCTGCTACCT
CTCTCCTCAGCCTCCAGGCCTGGCCCCAGACCCGCGACCCCAAACCCGCC
CCAGCCGACTACCCACTGGCCGCCGCCCGCATCTCCATTACCGTCATCGC
CTGTCTTCTGACCTCATACGCCCACTCCTCCACCGATGCAATCTGCTCCA
GCCCCGTCTTGGCCAGCGCAGCTGTCACACTTGCTGGTTCGCTCATCAGT
CCAGGCCTGGGCCAAGCCGCCATGTGTGGCTCTTTTGCAGGCATGTCTTC
TTCGCTTCTCCTCCCCACCTTTTCCTGGACCCTGTTGACGGGACTGGTGA
CATCTGTGTTGTTCGAGGCCTTCATTCACTATCGCAATGCGGCATTGGGC
TTGGGGGGCCGGCTTGGCACCATTGCATTCGTATCTGTGAATTTCGTGTC
GGCCCTTCGTGGGATTTGGGTGCTTCCTGCCCTTCCTTCTTCCCTTCCAC
CCCTTCCTACCCTTTCTACTTTTGCAGCCTCAATTGCAGCCTTCCCTGAC
GTTTCCGTAGCAACACTGGCGTCATTGAAGACGTTTGTGGCATCCTCGCC
GTATCTCCCCCTGACCATGGGGTACGGTGTTGTGGGGGCCCTTGCAACTA
TTGCCCTTCGAGAAGCCTCAGATGATAGTGCCGCGGCAGACCCTGTACGT
GCAGCAGCTGTAGTTGGTTTGTTGAGTGCACTGATGGTAGGCGTGGGAGG
ACACACGAGCCTGGGGGCGCTGGCTGCTTATGGAGGAGCGTTTGTAGGCA
TGTCTTTACCTTCGCGGTTAATGTACGGGTCACAACCGCCTCTTCCCGGC
TCTTCACCCTCGGATGCTGCGCCTCTTACCAGGCCGACGACCCCACGAAA
CGTCTTGACGAATTTTGCCATTGCTGGTTTGTTGGGCGGATTGGTACACG
GCCTAACCCTTCATTGGGGGATGTGGACGACGCCGGTCGCGGCATGGGGC
GGAAAGGCGGGTTTTTGTGCGTTTGTGGGCGTGTTGCTTCACCGGGGAAT
GCTGCGTGGATTGGATGGTTTGGAAAAGCTGGGGAGGAAATTGATGCGGT
CGGTTGCTGGGAAGGAGAAGTAGAAAACGTAGTGGAAGAGGTCGAGGTGA
CTATTTCAAGAATGAGGATGTATGTCTGGACGGTGGTGCCGATGAGAGGA
TGGTTGTAAAAATGTGAGAGGACGAGGATGGAATGATGAGTTTCCTGCTC
TTGCTGTCGCTGCTGCTGCTGCTGCCGCTGCGGCCGCTGCTGTCGCTGCT
GCTGCGTGGGCGACTTGTTTGTCTGCTGATGGGGGAAATGGAGGGGTTAG
GGATAAATTGGGACGATGAAGGGAAGGGACGGGTTACAGTCAAATGGTGT
GTACGCAAAGGATAGGGCGGAGGAAAATTATCTTTGACGTATGTTTTAAT
ATGAAAGGTTTAAAAAAAAAAATACAGAAAAAAGTGTCGCTAGGAGAGGT
TTGGTGGAGGCAGCCAGCGGCGGCTGCTCCCAGGCCCTCAATAGCTTGCA
CATATGCGGAGTACTCTCACAGTAAGAAGAAAGAAAAAGAAAACAATTTT
GTCCGGAGATTTATTGAAAAGGGCTACGTAATGCTTTGTTAAAATCTAAA
GACAAAAGATGGGGGGGGGGAAGCCTTCCGAACTCGCAAACCTCGAGTTC
ACCGCTGAACTCGAGATCAGGG back to topCoding sequence (CDS) from alignment at scaffold_20:54601..59522+ >mRNA_7476 ID=mRNA_7476|Name=jgi.p|Nanoce1779_2|598893|organism=Nannochloropsis oceanica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_20:54601..59522+ (Nannochloropsis oceanica)
ATGGCACTAGTCAAGATCTGCCTGCTAGCCGGCCTCGTAGCGCCTTTGTC
CCTTGTCCAGGGCTTTCACAAACCCATTCCGCGCTTCACCGTCCCGCACC
GCCCTTACCACAATCACCGCCCCGTCTCCTTCTCCTCCTCAAGCCTCTCT
CAAGTCCCTCCTCCTAAACCATCCGCTTCAGTATATTCAAGCCGCCCTGC
TACCTCTCTCCTCAGCCTCCAGGCCTGGCCCCAGACCCGCGACCCCAAAC
CCGCCCCAGCCGACTACCCACTGGCCGCCGCCCGCATCTCCATTACCGTC
ATCGCCTGTCTTCTGACCTCATACGCCCACTCCTCCACCGATGCAATCTG
CTCCAGCCCCGTCTTGGCCAGCGCAGCTGTCACACTTGCTGGTTCGCTCA
TCAGTCCAGGCCTGGGCCAAGCCGCCATGTGTGGCTCTTTTGCAGGCATG
TCTTCTTCGCTTCTCCTCCCCACCTTTTCCTGGACCCTGTTGACGGGACT
GGTGACATCTGTGTTGTTCGAGGCCTTCATTCACTATCGCAATGCGGCAT
TGGGCTTGGGGGGCCGGCTTGGCACCATTGCATTCGTATCTGTGAATTTC
GTGTCGGCCCTTCGTGGGATTTGGGTGCTTCCTGCCCTTCCTTCTTCCCT
TCCACCCCTTCCTACCCTTTCTACTTTTGCAGCCTCAATTGCAGCCTTCC
CTGACGTTTCCGTAGCAACACTGGCGTCATTGAAGACGTTTGTGGCATCC
TCGCCGTATCTCCCCCTGACCATGGGGTACGGTGTTGTGGGGGCCCTTGC
AACTATTGCCCTTCGAGAAGCCTCAGATGATAGTGCCGCGGCAGACCCTG
TACGTGCAGCAGCTGTAGTTGGTTTGTTGAGTGCACTGATGGTAGGCGTG
GGAGGACACACGAGCCTGGGGGCGCTGGCTGCTTATGGAGGAGCGTTTGT
AGGCATGTCTTTACCTTCGCGGTTAATGTACGGGTCACAACCGCCTCTTC
CCGGCTCTTCACCCTCGGATGCTGCGCCTCTTACCAGGCCGACGACCCCA
CGAAACGTCTTGACGAATTTTGCCATTGCTGGTTTGTTGGGCGGATTGGT
ACACGGCCTAACCCTTCATTGGGGGATGTGGACGACGCCGGTCGCGGCAT
GGGGCGGAAAGGCGGGTTTTTGTGCGTTTGTGGGCGTGTTGCTTCACCGG
GGAATGCTGCGTGGATTGGATGGTTTGGAAAAGCTGGGGAGGAAATTGAT
GCGGTCGGTTGCTGGGAAGGAGAAGTAG back to top
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