jgi.p|Nanoce1779_2|598897, mRNA_7475 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598897
Unique NamemRNA_7475
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1275
Alignment locationscaffold_20:56243..57517 -

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Properties
Property NameValue
TranscriptId598983
TrackFilteredModels2
ProteinId598897
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:56243..57517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598897gene_7475Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598897mRNA_7475-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7475CDS_7475Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7475 ID=mRNA_7475|Name=jgi.p|Nanoce1779_2|598897|organism=Nannochloropsis oceanica|type=mRNA|length=1275bp
CTGGACGCTGGCAGCTGGATCGTGTTCATGCGTCATATTCCCATCATGCC
TGTGTACGCACAGTGCGCATCACAGCCTACCCATCACAACTCACAAACAC
ATGCCAAAATCTGCCAGCGCCGAGATTTCCTCAAGGTGGTGGCGGTGGGG
GTGGACCGCCCAACCCCGATCGATTGTATGCCACCTCTTTGTCAACCCCT
CAATCCCTTGCTCTCCGGTGTCAAAACCCGAAGATCAAGAAGTGACGTGT
ACATGACGCAGTGACCACCCACACCAGTCTCGGCAGCCTCACAAGCCATG
CTCCTCCACCTGAATTATCCCTATTTATCTAGTAAAGAAAGACAAAGCGC
TCTGCAAAACATGACGGCCGCAACAAAGTGCTTTCGTTGCCTCGAGAAGC
ATGCCATCATGCCCACGCAATGATGCTTCAGCTCCACTCCGTACACATCA
TTCAAACACACCTTCTCTTCAAACACAGATACAAGCAACAGGCACCTAAG
AAACACAGCTTCCCTGGACAAAAGATGAGCGGTCCCCAGCTATTCCTCCT
TCTCCTGGTCACTTTCCTAAGCGTCGCCACTGCCTTTGTCCCCACCACTC
CTCGCTCCTCCTTCTCTTCCTCCTTCGCTTCCCTCACCGCTAAGCCCTCC
TCCACTCGCCTCCATCTCTGGGGTGGCAAGAAGAAGGCCGTCGAGACACC
CGCAGCCGCACCAGTAGCTGCCAAAGGCGGCAGGAAGGGCGCTCCCCCTT
CTCGACCTGCCTCAAAAAGGGCGACTCCCATGAAATACGGTCAGAACACG
GTGGTTGAGAAAAACGAAGACGTCATTGTCCCTGCCACCGAGTATTTCGC
CAATAAAAACGATCCGATAGTGCCGATTATCTTTGCTGGTTTGTTCATTC
CTATTTTCGGGTTGCTGGGATGGTGGTTGTATGGACCGCAGCCGGAGGTT
GTGGGGGTGGACCCGGATCAGAAGACTTCTTATGACATGTATATGAAGGA
CTCAAATAAGATGAAGAGTCGCAAGTTTTAATCGGGAGGCTGCTAGAGAG
GGGAGTTGCTCGGAGGAAGATTGGAGGAATGAGGGGGGAAGGAAGGGTAG
AAGAGAGCGAGGGAAGAATTAAGGGCAAAGGAATTTTACAGAAGGAAAGA
AGCTTGACTGGATGAGTAAACCGGATATAAGTGCGCCGAGTATGGTGAAG
CATTCTCGAAGAACAATTAGATTTATGTAGGGTGCTATCGCCTAGTTGGT
TTCTTGTTTTTTTTTTTCCATTTTT
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protein sequence of jgi.p|Nanoce1779_2|598897

>mRNA_7475-protein ID=mRNA_7475-protein|Name=jgi.p|Nanoce1779_2|598897|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MMLQLHSVHIIQTHLLFKHRYKQQAPKKHSFPGQKMSGPQLFLLLLVTFL
SVATAFVPTTPRSSFSSSFASLTAKPSSTRLHLWGGKKKAVETPAAAPVA
AKGGRKGAPPSRPASKRATPMKYGQNTVVEKNEDVIVPATEYFANKNDPI
VPIIFAGLFIPIFGLLGWWLYGPQPEVVGVDPDQKTSYDMYMKDSNKMKS
RKF*
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mRNA from alignment at scaffold_20:56243..57517-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7475 ID=mRNA_7475|Name=jgi.p|Nanoce1779_2|598897|organism=Nannochloropsis oceanica|type=mRNA|length=1275bp|location=Sequence derived from alignment at scaffold_20:56243..57517- (Nannochloropsis oceanica)
CTGGACGCTGGCAGCTGGATCGTGTTCATGCGTCATATTCCCATCATGCC
TGTGTACGCACAGTGCGCATCACAGCCTACCCATCACAACTCACAAACAC
ATGCCAAAATCTGCCAGCGCCGAGATTTCCTCAAGGTGGTGGCGGTGGGG
GTGGACCGCCCAACCCCGATCGATTGTATGCCACCTCTTTGTCAACCCCT
CAATCCCTTGCTCTCCGGTGTCAAAACCCGAAGATCAAGAAGTGACGTGT
ACATGACGCAGTGACCACCCACACCAGTCTCGGCAGCCTCACAAGCCATG
CTCCTCCACCTGAATTATCCCTATTTATCTAGTAAAGAAAGACAAAGCGC
TCTGCAAAACATGACGGCCGCAACAAAGTGCTTTCGTTGCCTCGAGAAGC
ATGCCATCATGCCCACGCAATGATGCTTCAGCTCCACTCCGTACACATCA
TTCAAACACACCTTCTCTTCAAACACAGATACAAGCAACAGGCACCTAAG
AAACACAGCTTCCCTGGACAAAAGATGAGCGGTCCCCAGCTATTCCTCCT
TCTCCTGGTCACTTTCCTAAGCGTCGCCACTGCCTTTGTCCCCACCACTC
CTCGCTCCTCCTTCTCTTCCTCCTTCGCTTCCCTCACCGCTAAGCCCTCC
TCCACTCGCCTCCATCTCTGGGGTGGCAAGAAGAAGGCCGTCGAGACACC
CGCAGCCGCACCAGTAGCTGCCAAAGGCGGCAGGAAGGGCGCTCCCCCTT
CTCGACCTGCCTCAAAAAGGGCGACTCCCATGAAATACGGTCAGAACACG
GTGGTTGAGAAAAACGAAGACGTCATTGTCCCTGCCACCGAGTATTTCGC
CAATAAAAACGATCCGATAGTGCCGATTATCTTTGCTGGTTTGTTCATTC
CTATTTTCGGGTTGCTGGGATGGTGGTTGTATGGACCGCAGCCGGAGGTT
GTGGGGGTGGACCCGGATCAGAAGACTTCTTATGACATGTATATGAAGGA
CTCAAATAAGATGAAGAGTCGCAAGTTTTAATCGGGAGGCTGCTAGAGAG
GGGAGTTGCTCGGAGGAAGATTGGAGGAATGAGGGGGGAAGGAAGGGTAG
AAGAGAGCGAGGGAAGAATTAAGGGCAAAGGAATTTTACAGAAGGAAAGA
AGCTTGACTGGATGAGTAAACCGGATATAAGTGCGCCGAGTATGGTGAAG
CATTCTCGAAGAACAATTAGATTTATGTAGGGTGCTATCGCCTAGTTGGT
TTCTTGTTTTTTTTTTTCCATTTTT
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Coding sequence (CDS) from alignment at scaffold_20:56243..57517-

>mRNA_7475 ID=mRNA_7475|Name=jgi.p|Nanoce1779_2|598897|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_20:56243..57517- (Nannochloropsis oceanica)
ATGATGCTTCAGCTCCACTCCGTACACATCATTCAAACACACCTTCTCTT
CAAACACAGATACAAGCAACAGGCACCTAAGAAACACAGCTTCCCTGGAC
AAAAGATGAGCGGTCCCCAGCTATTCCTCCTTCTCCTGGTCACTTTCCTA
AGCGTCGCCACTGCCTTTGTCCCCACCACTCCTCGCTCCTCCTTCTCTTC
CTCCTTCGCTTCCCTCACCGCTAAGCCCTCCTCCACTCGCCTCCATCTCT
GGGGTGGCAAGAAGAAGGCCGTCGAGACACCCGCAGCCGCACCAGTAGCT
GCCAAAGGCGGCAGGAAGGGCGCTCCCCCTTCTCGACCTGCCTCAAAAAG
GGCGACTCCCATGAAATACGGTCAGAACACGGTGGTTGAGAAAAACGAAG
ACGTCATTGTCCCTGCCACCGAGTATTTCGCCAATAAAAACGATCCGATA
GTGCCGATTATCTTTGCTGGTTTGTTCATTCCTATTTTCGGGTTGCTGGG
ATGGTGGTTGTATGGACCGCAGCCGGAGGTTGTGGGGGTGGACCCGGATC
AGAAGACTTCTTATGACATGTATATGAAGGACTCAAATAAGATGAAGAGT
CGCAAGTTTTAA
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Synonyms
Publications