jgi.p|Nanoce1779_2|653738, mRNA_7473 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|653738
Unique Name	mRNA_7473
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1767
Alignment location	scaffold_20:48501..50267 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	653824
Track	FilteredModels2
ProteinId	653738

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:48501..50267 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|653738	gene_7473	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|653738	mRNA_7473-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7473	CDS_7473	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:48501..50267+
coding sequence from alignment at scaffold_20:48501..50267+

mRNA sequence

>mRNA_7473 ID=mRNA_7473|Name=jgi.p|Nanoce1779_2|653738|organism=Nannochloropsis oceanica|type=mRNA|length=1767bp
AGCTCAAGCGGTACTGAATAGAGCACTAAAGCGCGCTAGCAGGGTGCCCA
ATGTACATGGGCAGACAGAGGATGCCTATGTGCTTGTGTGAAAGCGGACT
CTGGGACCGCAAATTGAAGGTACCCGCAACCTTCAAGGCATCATCGCCAA
CTCGAGACTCCCTCCCCATACTTACAAAACCCTTATATGCACAACACAAA
GAGCATAGGAGCAGCATAAACCGAAGCAACCATTCCGCGTCCACGCCCAT
CGTCTTCCCGTCTACTTATCGCCTTTTTCCTTTTCCTCCTCCCACCCTTC
TTCCTTTTGGTACTCATGGCGGCCTCCCCCCCTCCGACACTCCCACGGCA
GCTCCGCGTACTCCTCGACCAAGACGTTGGCGATAACGACAACAACAACA
GCAGCGGCAGCAACAGCAGCAGTAGTAATACTAGGAGCAATGGCATTCGG
CGCCTAAAAATAATCGCTAGCACCGCCGCAGACATCAAACACGCCATCCT
TCTGTTGGAAAAAAGGGAGGACGGGAGGGAGGACGGGAGGGAGGACGAGG
AGGAGGACATACGGGAGCTAGAGTGGTATGACCCTCTCAAAGAGACCTTC
TCTCCTCTTCCCAATGACCTGACTACTCTTCCCTCGCTAGTGCGCCTCCG
TTGGAACCGCCCACAACATTCCTTCTCCTCCTCCTCTTCCTCCTCCCCCC
TTCTCGCCCTTCCCGGTCGCCGGTTTCCGGTGGACCTCCGAGCTGAAGGT
TTCCCCATCTTAGATAAACGGCTGATTGTAATCGGGCAGCCAAATTCGGG
GCAAGGCACAGGGCATACCACGTGGGATGGGGCAGTGGTGTTGGCGAAGT
ACTTGGAGAAAAGGTGGAGACAAGAGAGGGAGGAGAAGGGGGAAGAGGAG
GAGAAGGAGGACGGGGAGGAAGGGGAGGGGACTAGCAGCAGAGTATATGG
AAGAAGAGTTACACCTTTAGAAAGAAGAAGGGAACGCCAGGGTGTGTCAT
TGACAGCAATAAAGGGTAGGAAGGTGGTCGAGTTGGGCGCAGGCACGGGG
GTGGTGGGACTAGCATGCGCGGCAATGGGGGCACGAGAAGTCATCTTGAC
CGATCTGCCCTACGCCTTGGACAACCTGAGAGGGAACGTGAGGAGGAATG
AGAGGGTCTGGAGGGAGGGAGGAAGGGAGGGAGGGCAGGCGCATGCATGT
GACGTGCGAGTGGAGGAAGGCGATTGGTTCGCGCCATCACCACCATCATC
GCAGGTAACGGGTGTGGAGGTGGTGGTCGCTGCAGATGTGGTGTGGTTGA
ATGAGCTGGTCGAGCCGTTGGTGAAGTATTTGGCGGTAATTTTGCAGGAG
GGTGGGCGGGAGGGAGGGGGGAAGGAGGAGGTGACGGAGGAGGGGGAGGG
AGGGAGAGAGGAAGGGGTGTGCGAGGAGGGGGCGACGGGATCATCGCCAT
CAGCAGCGGCAGTGGGATCAGAAAAAGACGTAGGGAAGGGGGGAGAACGA
GGGCCAGTATGCTACATGTCGTACCAAAGCCGTTCCTCCCAAACGGACAG
TCTGTTACGGGCAACTGTCGAAGGGGAGGGGTTGGTGATGAGGGAGATAG
GCGAGGAGGAGCAGGAGGAGGGGTTTAGAGCACCGGGCGTAATTTATGTG
TATGAAATCAGGGCAAGGAGGAGCAGAGAAGGGAGGAAGGGAGAGAGGGG
GGAGGAAGTGCCAACCGACTCTTGATTGGAGCCGGGGGAATGGGATTGGG
GGATGCGCTACATATAT

protein sequence of jgi.p|Nanoce1779_2|653738

>mRNA_7473-protein ID=mRNA_7473-protein|Name=jgi.p|Nanoce1779_2|653738|organism=Nannochloropsis oceanica|type=polypeptide|length=470bp
MAASPPPTLPRQLRVLLDQDVGDNDNNNSSGSNSSSSNTRSNGIRRLKII
ASTAADIKHAILLLEKREDGREDGREDEEEDIRELEWYDPLKETFSPLPN
DLTTLPSLVRLRWNRPQHSFSSSSSSSPLLALPGRRFPVDLRAEGFPILD
KRLIVIGQPNSGQGTGHTTWDGAVVLAKYLEKRWRQEREEKGEEEEKEDG
EEGEGTSSRVYGRRVTPLERRRERQGVSLTAIKGRKVVELGAGTGVVGLA
CAAMGAREVILTDLPYALDNLRGNVRRNERVWREGGREGGQAHACDVRVE
EGDWFAPSPPSSQVTGVEVVVAADVVWLNELVEPLVKYLAVILQEGGREG
GGKEEVTEEGEGGREEGVCEEGATGSSPSAAAVGSEKDVGKGGERGPVCY
MSYQSRSSQTDSLLRATVEGEGLVMREIGEEEQEEGFRAPGVIYVYEIRA
RRSREGRKGERGEEVPTDS*

mRNA from alignment at scaffold_20:48501..50267+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7473 ID=mRNA_7473|Name=jgi.p|Nanoce1779_2|653738|organism=Nannochloropsis oceanica|type=mRNA|length=1767bp|location=Sequence derived from alignment at scaffold_20:48501..50267+ (Nannochloropsis oceanica)
AGCTCAAGCGGTACTGAATAGAGCACTAAAGCGCGCTAGCAGGGTGCCCA
ATGTACATGGGCAGACAGAGGATGCCTATGTGCTTGTGTGAAAGCGGACT
CTGGGACCGCAAATTGAAGGTACCCGCAACCTTCAAGGCATCATCGCCAA
CTCGAGACTCCCTCCCCATACTTACAAAACCCTTATATGCACAACACAAA
GAGCATAGGAGCAGCATAAACCGAAGCAACCATTCCGCGTCCACGCCCAT
CGTCTTCCCGTCTACTTATCGCCTTTTTCCTTTTCCTCCTCCCACCCTTC
TTCCTTTTGGTACTCATGGCGGCCTCCCCCCCTCCGACACTCCCACGGCA
GCTCCGCGTACTCCTCGACCAAGACGTTGGCGATAACGACAACAACAACA
GCAGCGGCAGCAACAGCAGCAGTAGTAATACTAGGAGCAATGGCATTCGG
CGCCTAAAAATAATCGCTAGCACCGCCGCAGACATCAAACACGCCATCCT
TCTGTTGGAAAAAAGGGAGGACGGGAGGGAGGACGGGAGGGAGGACGAGG
AGGAGGACATACGGGAGCTAGAGTGGTATGACCCTCTCAAAGAGACCTTC
TCTCCTCTTCCCAATGACCTGACTACTCTTCCCTCGCTAGTGCGCCTCCG
TTGGAACCGCCCACAACATTCCTTCTCCTCCTCCTCTTCCTCCTCCCCCC
TTCTCGCCCTTCCCGGTCGCCGGTTTCCGGTGGACCTCCGAGCTGAAGGT
TTCCCCATCTTAGATAAACGGCTGATTGTAATCGGGCAGCCAAATTCGGG
GCAAGGCACAGGGCATACCACGTGGGATGGGGCAGTGGTGTTGGCGAAGT
ACTTGGAGAAAAGGTGGAGACAAGAGAGGGAGGAGAAGGGGGAAGAGGAG
GAGAAGGAGGACGGGGAGGAAGGGGAGGGGACTAGCAGCAGAGTATATGG
AAGAAGAGTTACACCTTTAGAAAGAAGAAGGGAACGCCAGGGTGTGTCAT
TGACAGCAATAAAGGGTAGGAAGGTGGTCGAGTTGGGCGCAGGCACGGGG
GTGGTGGGACTAGCATGCGCGGCAATGGGGGCACGAGAAGTCATCTTGAC
CGATCTGCCCTACGCCTTGGACAACCTGAGAGGGAACGTGAGGAGGAATG
AGAGGGTCTGGAGGGAGGGAGGAAGGGAGGGAGGGCAGGCGCATGCATGT
GACGTGCGAGTGGAGGAAGGCGATTGGTTCGCGCCATCACCACCATCATC
GCAGGTAACGGGTGTGGAGGTGGTGGTCGCTGCAGATGTGGTGTGGTTGA
ATGAGCTGGTCGAGCCGTTGGTGAAGTATTTGGCGGTAATTTTGCAGGAG
GGTGGGCGGGAGGGAGGGGGGAAGGAGGAGGTGACGGAGGAGGGGGAGGG
AGGGAGAGAGGAAGGGGTGTGCGAGGAGGGGGCGACGGGATCATCGCCAT
CAGCAGCGGCAGTGGGATCAGAAAAAGACGTAGGGAAGGGGGGAGAACGA
GGGCCAGTATGCTACATGTCGTACCAAAGCCGTTCCTCCCAAACGGACAG
TCTGTTACGGGCAACTGTCGAAGGGGAGGGGTTGGTGATGAGGGAGATAG
GCGAGGAGGAGCAGGAGGAGGGGTTTAGAGCACCGGGCGTAATTTATGTG
TATGAAATCAGGGCAAGGAGGAGCAGAGAAGGGAGGAAGGGAGAGAGGGG
GGAGGAAGTGCCAACCGACTCTTGATTGGAGCCGGGGGAATGGGATTGGG
GGATGCGCTACATATAT

Coding sequence (CDS) from alignment at scaffold_20:48501..50267+

>mRNA_7473 ID=mRNA_7473|Name=jgi.p|Nanoce1779_2|653738|organism=Nannochloropsis oceanica|type=CDS|length=1410bp|location=Sequence derived from alignment at scaffold_20:48501..50267+ (Nannochloropsis oceanica)
ATGGCGGCCTCCCCCCCTCCGACACTCCCACGGCAGCTCCGCGTACTCCT
CGACCAAGACGTTGGCGATAACGACAACAACAACAGCAGCGGCAGCAACA
GCAGCAGTAGTAATACTAGGAGCAATGGCATTCGGCGCCTAAAAATAATC
GCTAGCACCGCCGCAGACATCAAACACGCCATCCTTCTGTTGGAAAAAAG
GGAGGACGGGAGGGAGGACGGGAGGGAGGACGAGGAGGAGGACATACGGG
AGCTAGAGTGGTATGACCCTCTCAAAGAGACCTTCTCTCCTCTTCCCAAT
GACCTGACTACTCTTCCCTCGCTAGTGCGCCTCCGTTGGAACCGCCCACA
ACATTCCTTCTCCTCCTCCTCTTCCTCCTCCCCCCTTCTCGCCCTTCCCG
GTCGCCGGTTTCCGGTGGACCTCCGAGCTGAAGGTTTCCCCATCTTAGAT
AAACGGCTGATTGTAATCGGGCAGCCAAATTCGGGGCAAGGCACAGGGCA
TACCACGTGGGATGGGGCAGTGGTGTTGGCGAAGTACTTGGAGAAAAGGT
GGAGACAAGAGAGGGAGGAGAAGGGGGAAGAGGAGGAGAAGGAGGACGGG
GAGGAAGGGGAGGGGACTAGCAGCAGAGTATATGGAAGAAGAGTTACACC
TTTAGAAAGAAGAAGGGAACGCCAGGGTGTGTCATTGACAGCAATAAAGG
GTAGGAAGGTGGTCGAGTTGGGCGCAGGCACGGGGGTGGTGGGACTAGCA
TGCGCGGCAATGGGGGCACGAGAAGTCATCTTGACCGATCTGCCCTACGC
CTTGGACAACCTGAGAGGGAACGTGAGGAGGAATGAGAGGGTCTGGAGGG
AGGGAGGAAGGGAGGGAGGGCAGGCGCATGCATGTGACGTGCGAGTGGAG
GAAGGCGATTGGTTCGCGCCATCACCACCATCATCGCAGGTAACGGGTGT
GGAGGTGGTGGTCGCTGCAGATGTGGTGTGGTTGAATGAGCTGGTCGAGC
CGTTGGTGAAGTATTTGGCGGTAATTTTGCAGGAGGGTGGGCGGGAGGGA
GGGGGGAAGGAGGAGGTGACGGAGGAGGGGGAGGGAGGGAGAGAGGAAGG
GGTGTGCGAGGAGGGGGCGACGGGATCATCGCCATCAGCAGCGGCAGTGG
GATCAGAAAAAGACGTAGGGAAGGGGGGAGAACGAGGGCCAGTATGCTAC
ATGTCGTACCAAAGCCGTTCCTCCCAAACGGACAGTCTGTTACGGGCAAC
TGTCGAAGGGGAGGGGTTGGTGATGAGGGAGATAGGCGAGGAGGAGCAGG
AGGAGGGGTTTAGAGCACCGGGCGTAATTTATGTGTATGAAATCAGGGCA
AGGAGGAGCAGAGAAGGGAGGAAGGGAGAGAGGGGGGAGGAAGTGCCAAC
CGACTCTTGA

Synonyms

Publications