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Properties
| Property Name | Value |
|---|
| TranscriptId | 598967 |
| Track | FilteredModels2 |
| ProteinId | 598881 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:42776..45375 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7470 ID=mRNA_7470|Name=jgi.p|Nanoce1779_2|598881|organism=Nannochloropsis oceanica|type=mRNA|length=1005bp
ACGACAGCACACACACCCGGCACTCAAACCAAACCGTCCACAAGCGACAC
CCTGCCCTAGCATGGCCCAGACGTCCGGGTCACCTGCTTCTGCTGCCTTC
GACCGCCGAGCAACAGTCACGGCGGCCTCTACGACCGCGACAGCCCACTA
TGAATCCACCCATCCCCACCACCGCATTGCGAATGTGGCCTTGGGGCAGA
CGGCAGCAGCAGTGATTGCCTCGTCCTTCGTTTCCCCCGCCATGACCATT
ATCGACATGTCCATCATTCGCGCGCAGTTCAGCAAGTCCTCTATCAGCTC
AGCCTTGCGCGGCACCACCGCAGACCTGCTGAGCGGCCGGATGCGATGGA
GCCCTGCTCTGGGGATTATGAGCACTGTGTACACCAGCACCTACCTGACC
GCAAATTACACCACGGCCCTGTGCCACGAGCTGGACATTGACTACAAGAT
ACCCACGGCCGTGGCTACGTCCCTGGTCAACATCACTGCCATCGCTTACA
AGGACAGGGAATTCGCGCGTATGTGCTCTAAGGCCCCGACCACCTTTCCG
TTATCCTCGTACGGCCTCTTCGCCATGCGCGACGGCTTAACGGTCACTTC
ATCGTTTGTGCTCAAGAACACCGTCAAGGACCACCTCATCGACGAACACA
ACCTCGAGGCCCATAATGCCGACCTGGCCGCCTCCTTCGCCGTGCCCATG
CTCGCGCAGCTTTTCTCCACCCCCCTCCATATCCTCTCCCTGGACATCTA
CTCGCACCCGCAGTCGCCATTTCGCATGCGAATGAAGGAGGTAATGAAGG
GCTATTCGTCCGTATGCTCGGGGAGGGTGATGAGGATCATCCCAGCCTTC
GGCATAGGGGGCTACCTGAATGATATTGTCAAGGAGGGATTTGAGGAGGA
GCAGGTCGGGAGAAGGGATGGAAAGGCTGTGCGTATGCCAGTCACGGGAG
AGAGGAAGAATTGAGCTCTCACGCATGAGGAGAAGAGAGGCAGGAATGAG
GGAGG back to topprotein sequence of jgi.p|Nanoce1779_2|598881 >mRNA_7470-protein ID=mRNA_7470-protein|Name=jgi.p|Nanoce1779_2|598881|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MAQTSGSPASAAFDRRATVTAASTTATAHYESTHPHHRIANVALGQTAAA
VIASSFVSPAMTIIDMSIIRAQFSKSSISSALRGTTADLLSGRMRWSPAL
GIMSTVYTSTYLTANYTTALCHELDIDYKIPTAVATSLVNITAIAYKDRE
FARMCSKAPTTFPLSSYGLFAMRDGLTVTSSFVLKNTVKDHLIDEHNLEA
HNADLAASFAVPMLAQLFSTPLHILSLDIYSHPQSPFRMRMKEVMKGYSS
VCSGRVMRIIPAFGIGGYLNDIVKEGFEEEQVGRRDGKAVRMPVTGERKN
* back to topmRNA from alignment at scaffold_20:42776..45375- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7470 ID=mRNA_7470|Name=jgi.p|Nanoce1779_2|598881|organism=Nannochloropsis oceanica|type=mRNA|length=2600bp|location=Sequence derived from alignment at scaffold_20:42776..45375- (Nannochloropsis oceanica)
ACGACAGCACACACACCCGGCACTCAAACCAAACCGTCCACAAGCGACAC
CCTGCCCTAGCATGGCCCAGACGTCCGGGTCACCTGCTTCTGCTGCCTTC
GACCGCCGAGCAACAGTCACGGCGGCCTCTACGACCGCGACAGCCCACTA
TGAATCCACCCATCCCCACCACCGCATTGCGAATGTGGCCTTGGGGCAGA
CGGCAGCAGCAGTGATTGCCTCGTCCTTCGTTTCCCCCGCCATGACCATT
ATCGACATGTCCATGTACGTTCTCCTTGTGTGTATGTGGCGCCCCTAGAA
TTTTCGTAAAGAACGTTCCTGAGACGACCAGCTTGGACGGGATGGGCTGA
AGGGATAGGGAAAAGGGTTTAAGTCTCACGCAGTGGTGAGTAAATAATAG
TCCACGAGGGGGAGGTTTGTCGGGAGTGTGCTTTCCATTGTGGCCCCCAA
GCTTTTATCTATCGGGAAAATGCAAATGCTGGCACATGCCTTTGGTGAGG
CCGAGACTGGCATGCATTAGGGAGAGATGGGGGGAGGGAGGGAAGGTTAG
GAGAGGGGGAGGGCACTACATTACTGCCTTGCGCCTTGTGGTGTGGGATG
ACAAGGTCTCCCTTTGGTCTGGTTGCGGACAAAGGATATGGATGAAAAGG
GAGGAAAGTGGGCCGCTAAAGGCAGAAGAAAGCGAGTACGGTAAAGAGAA
TGCGGGCATTTATGTATATGCAACATGCATTCCATCCACGGATTTCCACC
ATATTAATCCATCCTAACCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTTCCCTCTCTCCTGCCCTCCATGCAGCATTCGCGCG
CAGTTCAGCAAGTCCTCTATCAGCTCAGCCTTGCGCGGCACCACCGCAGA
CCTGCTGAGCGGCCGGATGCGATGGAGCCCTGCTCTGGGGATTATGAGCA
CTGTGTACACCAGGTGGGGAGTGAGGAACGGAGGGAAGGAGGGAGGGAGG
GAGGGACGAGGAAGGGAGGGAGGGATGAGGGAGGGAGGAAGGGAGGGGCC
CGTTGATGACGTCTCTCAACCCCATTTTACTTTCTCTCCCTCCCTCCCTC
CCATCCCGTCGATGTACAAATCCAAATCGAACTTCTTGTTCACTCACCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCAGCACCTACCTGACCGCAAATTAC
ACCACGGCCCTGTGCCACGAGCTGGACATTGACTACAAGATACCCACGGC
CGTGGCTACGTCCCTGGTCAACATCACGTACGTGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGATGTATA
TGCGCGGCGGAGTTACTTCACACAAATGTTGCCTCATAAAGTCTTCCTTA
TTTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTAACCTCCTCCT
CAGTGCCATCGCTTACAAGGACAGGGAATTCGCGCGTATGTGCTCTAAGG
TACGCTGAGGAAAATAGCAAGAGAATAGGGGCAGGGAGGGAATGGAGGAG
GGAGGGAAATAGGAAACATAAGGGCTCACACCCAACGAGACATTCCGAAA
AATCATTTCTCCTTTCAACCCTCCCTCCCTCCTTCCCTCCCTACAGGCCC
CGACCACCTTTCCGTTATCCTCGTACGGCCTCTTCGCCATGCGCGACGGC
TTAACGGTCACTTCATCGTTTGTGCTCAAGGTAGGAGGAAGGAAGGGAGG
GAGGGAGGGAGAGAAAGAGGAGGGGAGGGGGGGAGGGAGAAAGAGCAGTA
TGACAACGATGGGACTGAAGCATCCTCCTTCTCTGTCTCCCCTCCTCCTC
CTTCTCTCCCCACCTCCCTTCTCTCGAGAAATTAGAATACCTTCCAAACC
CACCTCATCGACCTCAATGCAACCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCGCCCTTTCACCCTCAGAACACCGTCAAGGACCACCTCA
TCGACGAACACAACCTCGAGGCCCATAATGCCGACCTGGCCGCCTCCTTC
GCCGTGCCCATGCTCGCGCAGCTTTTCTCCACCCCCCTCCATGTACGTTA
AAAAACCTTGTGATTCCCTTTAGCCTCGCGCACACATCCTCCCTCCCTCC
CTCCCTTCCTTCCTTCCTCCCTCCCTCCTTTCCCTCTTTTTATTGCGTGG
ACAGACCTCGCTTCCTCTACTGCAACTCCCTCGTCCTCGTTCTTCTCCTC
GCCCTCCTCACCCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCACCGGTCCTACAGATCCTCTCCCTGGACATCTACTCGC
ACCCGCAGTCGCCATTTCGCATGCGAATGAAGGAGGTAATGAAGGGCTAT
TCGTCCGTATGCTCGGGGAGGGTGATGAGGATCATCCCAGCCTTCGGCAT
AGGGGGCTACCTGAATGATATTGTCAAGGAGGGATTTGAGGAGGAGCAGG
TCGGGAGAAGGGATGGAAAGGCTGTGCGTATGCCAGTCACGGGAGAGAGG
AAGAATTGAGCTCTCACGCATGAGGAGAAGAGAGGCAGGAATGAGGGAGG
back to topCoding sequence (CDS) from alignment at scaffold_20:42776..45375- >mRNA_7470 ID=mRNA_7470|Name=jgi.p|Nanoce1779_2|598881|organism=Nannochloropsis oceanica|type=CDS|length=6321bp|location=Sequence derived from alignment at scaffold_20:42776..45375- (Nannochloropsis oceanica)
ATCCTCTCCCTGGACATCTACTCGCACCCGCAGTCGCCATTTCGCATGCG
AATGAAGGAGGTAATGAAGGGCTATTCGTCCGTATGCTCGGGGAGGGTGA
TGAGGATCATCCCAGCCTTCGGCATAGGGGGCTACCTGAATGATATTGTC
AAGGAGGGATTTGAGGAGGAGCAGGTCGGGAGAAGGGATGGAAAGGCTGT
GCGTATGCCAGTCACGGGAGAGAGGAAGAATTGAAACACCGTCAAGGACC
ACCTCATCGACGAACACAACCTCGAGGCCCATAATGCCGACCTGGCCGCC
TCCTTCGCCGTGCCCATGCTCGCGCAGCTTTTCTCCACCCCCCTCCATGC
CCCGACCACCTTTCCGTTATCCTCGTACGGCCTCTTCGCCATGCGCGACG
GCTTAACGGTCACTTCATCGTTTGTGCTCAAGTGCCATCGCTTACAAGGA
CAGGGAATTCGCGCGTATGTGCTCTAAGCACCTACCTGACCGCAAATTAC
ACCACGGCCCTGTGCCACGAGCTGGACATTGACTACAAGATACCCACGGC
CGTGGCTACGTCCCTGGTCAACATCACCATTCGCGCGCAGTTCAGCAAGT
CCTCTATCAGCTCAGCCTTGCGCGGCACCACCGCAGACCTGCTGAGCGGC
CGGATGCGATGGAGCCCTGCTCTGGGGATTATGAGCACTGTGTACACCAG
ATGGCCCAGACGTCCGGGTCACCTGCTTCTGCTGCCTTCGACCGCCGAGC
AACAGTCACGGCGGCCTCTACGACCGCGACAGCCCACTATGAATCCACCC
ATCCCCACCACCGCATTGCGAATGTGGCCTTGGGGCAGACGGCAGCAGCA
GTGATTGCCTCGTCCTTCGTTTCCCCCGCCATGACCATTATCGACATGTC
CATATCCTCTCCCTGGACATCTACTCGCACCCGCAGTCGCCATTTCGCAT
GCGAATGAAGGAGGTAATGAAGGGCTATTCGTCCGTATGCTCGGGGAGGG
TGATGAGGATCATCCCAGCCTTCGGCATAGGGGGCTACCTGAATGATATT
GTCAAGGAGGGATTTGAGGAGGAGCAGGTCGGGAGAAGGGATGGAAAGGC
TGTGCGTATGCCAGTCACGGGAGAGAGGAAGAATTGAAACACCGTCAAGG
ACCACCTCATCGACGAACACAACCTCGAGGCCCATAATGCCGACCTGGCC
GCCTCCTTCGCCGTGCCCATGCTCGCGCAGCTTTTCTCCACCCCCCTCCA
TGCCCCGACCACCTTTCCGTTATCCTCGTACGGCCTCTTCGCCATGCGCG
ACGGCTTAACGGTCACTTCATCGTTTGTGCTCAAGTGCCATCGCTTACAA
GGACAGGGAATTCGCGCGTATGTGCTCTAAGCACCTACCTGACCGCAAAT
TACACCACGGCCCTGTGCCACGAGCTGGACATTGACTACAAGATACCCAC
GGCCGTGGCTACGTCCCTGGTCAACATCACCATTCGCGCGCAGTTCAGCA
AGTCCTCTATCAGCTCAGCCTTGCGCGGCACCACCGCAGACCTGCTGAGC
GGCCGGATGCGATGGAGCCCTGCTCTGGGGATTATGAGCACTGTGTACAC
CAGATGGCCCAGACGTCCGGGTCACCTGCTTCTGCTGCCTTCGACCGCCG
AGCAACAGTCACGGCGGCCTCTACGACCGCGACAGCCCACTATGAATCCA
CCCATCCCCACCACCGCATTGCGAATGTGGCCTTGGGGCAGACGGCAGCA
GCAGTGATTGCCTCGTCCTTCGTTTCCCCCGCCATGACCATTATCGACAT
GTCCATATCCTCTCCCTGGACATCTACTCGCACCCGCAGTCGCCATTTCG
CATGCGAATGAAGGAGGTAATGAAGGGCTATTCGTCCGTATGCTCGGGGA
GGGTGATGAGGATCATCCCAGCCTTCGGCATAGGGGGCTACCTGAATGAT
ATTGTCAAGGAGGGATTTGAGGAGGAGCAGGTCGGGAGAAGGGATGGAAA
GGCTGTGCGTATGCCAGTCACGGGAGAGAGGAAGAATTGAAACACCGTCA
AGGACCACCTCATCGACGAACACAACCTCGAGGCCCATAATGCCGACCTG
GCCGCCTCCTTCGCCGTGCCCATGCTCGCGCAGCTTTTCTCCACCCCCCT
CCATGCCCCGACCACCTTTCCGTTATCCTCGTACGGCCTCTTCGCCATGC
GCGACGGCTTAACGGTCACTTCATCGTTTGTGCTCAAGTGCCATCGCTTA
CAAGGACAGGGAATTCGCGCGTATGTGCTCTAAGCACCTACCTGACCGCA
AATTACACCACGGCCCTGTGCCACGAGCTGGACATTGACTACAAGATACC
CACGGCCGTGGCTACGTCCCTGGTCAACATCACCATTCGCGCGCAGTTCA
GCAAGTCCTCTATCAGCTCAGCCTTGCGCGGCACCACCGCAGACCTGCTG
AGCGGCCGGATGCGATGGAGCCCTGCTCTGGGGATTATGAGCACTGTGTA
CACCAGATGGCCCAGACGTCCGGGTCACCTGCTTCTGCTGCCTTCGACCG
CCGAGCAACAGTCACGGCGGCCTCTACGACCGCGACAGCCCACTATGAAT
CCACCCATCCCCACCACCGCATTGCGAATGTGGCCTTGGGGCAGACGGCA
GCAGCAGTGATTGCCTCGTCCTTCGTTTCCCCCGCCATGACCATTATCGA
CATGTCCATATCCTCTCCCTGGACATCTACTCGCACCCGCAGTCGCCATT
TCGCATGCGAATGAAGGAGGTAATGAAGGGCTATTCGTCCGTATGCTCGG
GGAGGGTGATGAGGATCATCCCAGCCTTCGGCATAGGGGGCTACCTGAAT
GATATTGTCAAGGAGGGATTTGAGGAGGAGCAGGTCGGGAGAAGGGATGG
AAAGGCTGTGCGTATGCCAGTCACGGGAGAGAGGAAGAATTGAAACACCG
TCAAGGACCACCTCATCGACGAACACAACCTCGAGGCCCATAATGCCGAC
CTGGCCGCCTCCTTCGCCGTGCCCATGCTCGCGCAGCTTTTCTCCACCCC
CCTCCATGCCCCGACCACCTTTCCGTTATCCTCGTACGGCCTCTTCGCCA
TGCGCGACGGCTTAACGGTCACTTCATCGTTTGTGCTCAAGTGCCATCGC
TTACAAGGACAGGGAATTCGCGCGTATGTGCTCTAAGCACCTACCTGACC
GCAAATTACACCACGGCCCTGTGCCACGAGCTGGACATTGACTACAAGAT
ACCCACGGCCGTGGCTACGTCCCTGGTCAACATCACCATTCGCGCGCAGT
TCAGCAAGTCCTCTATCAGCTCAGCCTTGCGCGGCACCACCGCAGACCTG
CTGAGCGGCCGGATGCGATGGAGCCCTGCTCTGGGGATTATGAGCACTGT
GTACACCAGATGGCCCAGACGTCCGGGTCACCTGCTTCTGCTGCCTTCGA
CCGCCGAGCAACAGTCACGGCGGCCTCTACGACCGCGACAGCCCACTATG
AATCCACCCATCCCCACCACCGCATTGCGAATGTGGCCTTGGGGCAGACG
GCAGCAGCAGTGATTGCCTCGTCCTTCGTTTCCCCCGCCATGACCATTAT
CGACATGTCCATATCCTCTCCCTGGACATCTACTCGCACCCGCAGTCGCC
ATTTCGCATGCGAATGAAGGAGGTAATGAAGGGCTATTCGTCCGTATGCT
CGGGGAGGGTGATGAGGATCATCCCAGCCTTCGGCATAGGGGGCTACCTG
AATGATATTGTCAAGGAGGGATTTGAGGAGGAGCAGGTCGGGAGAAGGGA
TGGAAAGGCTGTGCGTATGCCAGTCACGGGAGAGAGGAAGAATTGAAACA
CCGTCAAGGACCACCTCATCGACGAACACAACCTCGAGGCCCATAATGCC
GACCTGGCCGCCTCCTTCGCCGTGCCCATGCTCGCGCAGCTTTTCTCCAC
CCCCCTCCATGCCCCGACCACCTTTCCGTTATCCTCGTACGGCCTCTTCG
CCATGCGCGACGGCTTAACGGTCACTTCATCGTTTGTGCTCAAGTGCCAT
CGCTTACAAGGACAGGGAATTCGCGCGTATGTGCTCTAAGCACCTACCTG
ACCGCAAATTACACCACGGCCCTGTGCCACGAGCTGGACATTGACTACAA
GATACCCACGGCCGTGGCTACGTCCCTGGTCAACATCACCATTCGCGCGC
AGTTCAGCAAGTCCTCTATCAGCTCAGCCTTGCGCGGCACCACCGCAGAC
CTGCTGAGCGGCCGGATGCGATGGAGCCCTGCTCTGGGGATTATGAGCAC
TGTGTACACCAGATGGCCCAGACGTCCGGGTCACCTGCTTCTGCTGCCTT
CGACCGCCGAGCAACAGTCACGGCGGCCTCTACGACCGCGACAGCCCACT
ATGAATCCACCCATCCCCACCACCGCATTGCGAATGTGGCCTTGGGGCAG
ACGGCAGCAGCAGTGATTGCCTCGTCCTTCGTTTCCCCCGCCATGACCAT
TATCGACATGTCCATATCCTCTCCCTGGACATCTACTCGCACCCGCAGTC
GCCATTTCGCATGCGAATGAAGGAGGTAATGAAGGGCTATTCGTCCGTAT
GCTCGGGGAGGGTGATGAGGATCATCCCAGCCTTCGGCATAGGGGGCTAC
CTGAATGATATTGTCAAGGAGGGATTTGAGGAGGAGCAGGTCGGGAGAAG
GGATGGAAAGGCTGTGCGTATGCCAGTCACGGGAGAGAGGAAGAATTGAA
ACACCGTCAAGGACCACCTCATCGACGAACACAACCTCGAGGCCCATAAT
GCCGACCTGGCCGCCTCCTTCGCCGTGCCCATGCTCGCGCAGCTTTTCTC
CACCCCCCTCCATGCCCCGACCACCTTTCCGTTATCCTCGTACGGCCTCT
TCGCCATGCGCGACGGCTTAACGGTCACTTCATCGTTTGTGCTCAAGTGC
CATCGCTTACAAGGACAGGGAATTCGCGCGTATGTGCTCTAAGCACCTAC
CTGACCGCAAATTACACCACGGCCCTGTGCCACGAGCTGGACATTGACTA
CAAGATACCCACGGCCGTGGCTACGTCCCTGGTCAACATCACCATTCGCG
CGCAGTTCAGCAAGTCCTCTATCAGCTCAGCCTTGCGCGGCACCACCGCA
GACCTGCTGAGCGGCCGGATGCGATGGAGCCCTGCTCTGGGGATTATGAG
CACTGTGTACACCAGATGGCCCAGACGTCCGGGTCACCTGCTTCTGCTGC
CTTCGACCGCCGAGCAACAGTCACGGCGGCCTCTACGACCGCGACAGCCC
ACTATGAATCCACCCATCCCCACCACCGCATTGCGAATGTGGCCTTGGGG
CAGACGGCAGCAGCAGTGATTGCCTCGTCCTTCGTTTCCCCCGCCATGAC
CATTATCGACATGTCCATATCCTCTCCCTGGACATCTACTCGCACCCGCA
GTCGCCATTTCGCATGCGAATGAAGGAGGTAATGAAGGGCTATTCGTCCG
TATGCTCGGGGAGGGTGATGAGGATCATCCCAGCCTTCGGCATAGGGGGC
TACCTGAATGATATTGTCAAGGAGGGATTTGAGGAGGAGCAGGTCGGGAG
AAGGGATGGAAAGGCTGTGCGTATGCCAGTCACGGGAGAGAGGAAGAATT
GAAACACCGTCAAGGACCACCTCATCGACGAACACAACCTCGAGGCCCAT
AATGCCGACCTGGCCGCCTCCTTCGCCGTGCCCATGCTCGCGCAGCTTTT
CTCCACCCCCCTCCATGCCCCGACCACCTTTCCGTTATCCTCGTACGGCC
TCTTCGCCATGCGCGACGGCTTAACGGTCACTTCATCGTTTGTGCTCAAG
TGCCATCGCTTACAAGGACAGGGAATTCGCGCGTATGTGCTCTAAGCACC
TACCTGACCGCAAATTACACCACGGCCCTGTGCCACGAGCTGGACATTGA
CTACAAGATACCCACGGCCGTGGCTACGTCCCTGGTCAACATCACCATTC
GCGCGCAGTTCAGCAAGTCCTCTATCAGCTCAGCCTTGCGCGGCACCACC
GCAGACCTGCTGAGCGGCCGGATGCGATGGAGCCCTGCTCTGGGGATTAT
GAGCACTGTGTACACCAGATGGCCCAGACGTCCGGGTCACCTGCTTCTGC
TGCCTTCGACCGCCGAGCAACAGTCACGGCGGCCTCTACGACCGCGACAG
CCCACTATGAATCCACCCATCCCCACCACCGCATTGCGAATGTGGCCTTG
GGGCAGACGGCAGCAGCAGTGATTGCCTCGTCCTTCGTTTCCCCCGCCAT
GACCATTATCGACATGTCCAT back to top
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