jgi.p|Nanoce1779_2|574000, mRNA_747 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574000
Unique Name	mRNA_747
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1813
Alignment location	scaffold_2:346443..348763 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574086
Track	FilteredModels2
ProteinId	574000

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:346443..348763 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574000	gene_747	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574000	mRNA_747-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_747	CDS_747	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:346443..348763+
coding sequence from alignment at scaffold_2:346443..348763+

mRNA sequence

>mRNA_747 ID=mRNA_747|Name=jgi.p|Nanoce1779_2|574000|organism=Nannochloropsis oceanica|type=mRNA|length=1813bp
AACAGGCATCCGTCCCCCTTCTTCCCCCTTGACAATGAACGGCATGGACA
CCATCGCGGGTAGCGGCAGCGAGCTCCAGCATACGCCCAAAAACATCCTG
GTCACCGGGGGCGCGGGTTTCATCGGCTCACACGTGGCCATCTTGCTCGC
GCACAAGTATCCCAAGTACAAGATCGTGGTGCTAGACAAGTTGGATTATT
GCGCGTCTTTGGACAACTTGTCTGAGGTCAACCGCCGCAGAAATTTCAAA
TTTGTCAAGGGAAATATATGTTCCTCCGACCTCGTCAATTTTGTGCTCGA
GGAAGAGGAGATCGACACGGTCCTCCACTTGGCGGCGCAGACACATGTCG
ATAATAGCTTCGGGAACAGCTTCTCGTTTACCCAGAATAATATTTTAGGA
ACCCATGTTTTGCTCGAGAGCGCGAAGGTCCACGGCATCAAGCGCTTTGT
TCATTGCTCGACAGATGAGGTTTATGGTGAGGGTACCGCGGACCAAGAGC
CCATGTTTGAGGACAATGTGCTTGAGCCGACCAACCCCTACGCCGCTACC
AAAGCTGGTGCCGAGTTTTTGGCTAAATCATACCACCGCTCCTTCAACCT
GCCCGTCATCATCACGCGTGGTAATAACGTCTACGGCCCACACCAGTACC
CCGAGAAGCTCATCCCGAAGTTTATCAATTTGCTCCAGCGGGCGCGGCCA
TTGACGCTGCACGGCAACGGCCTCAACACGCGAAATTTTCTGTACGTGAC
CGATGTGGCAAAAGCTTTCGATTGCGTTTTACACTATGGCGAGACTGGCA
AAATCTACAACATTGGTGGCACGCACGAGAAGACGAATGTGGATGTGGCC
AAGGATTTAATAAGAAAGATGGAACTTCTGCCCTCGGCTGCTGACAATGT
GAAGGCCTACCCGAGCGCTGGTGACGAGAGCGCAGCTCAGGAGAAGAGGG
AGGGGCTGGACACTTCGGTCTCTTCTGCTGTTGCCGCCGCCGCTTGGGAC
CTCCCCAAGGACGATGATGATTCGGCTTACGGGCCCTATCTTACCTTTGT
AGAAGATCGACCCTTCAATGACTTGCGCTATTCTATCAACAGTGAGGCTC
TGCGGCGCTTAGGCTGGCGCGAGGAGGTATCTTGGGAGGATGGACTCGCT
GAGACTATCCAGTGGTATATTCACAAGGCACAAAATCGTTGGGGCAATAT
CGAATCGGCCTTGGTCCCGCATCCAAAAGGTCCTCTGCCGGACGACGCGG
CTTAAGCGGTCTCACATGAATAATTGTTTGTAGGTGAGAGGGCATGGTCG
ATGTGATTTGTTAGCAGTTGTCGGGTGAAATTGGGAATTATTTTTGTGAG
AAGGAAAGTGCCAAGGAGAAGGGCCGACGTTTGCACAAAGACGAAAATCA
GCTCTGGTAGGCAAGAAAGACGGAAGAAATAAAGAATTAGCAGGGAGATT
TGGGAAATGGTGTTTTTACGTTGTGATCACCTGGGCTTCATTTCTACGTT
CTCGCGTGCGATAAGAAATATTGTATGCTCGAATACTTTCCATGCGATCT
CGCACTCGTTCCCTGACGGGGCTGGAACGCGCAGTTTGCGTGATGAAGGA
ATTCACCGACCACTTAACCAAGATGCCACCGACAATTGGACCACCGAAAG
CCTCGGACTCGGCACAATTTTCTCCTATGCCCTTTCTGAGGCCATTTAAT
CGACGCGCGCATATTTCAGCAGCACATAAGAAATACATCGTTATACAAGA
AGAACATCCAAAATAAATATAAATGTGACACGTGTCATTTCGCTAACGAT
TTTTCGATTAAGT

protein sequence of jgi.p|Nanoce1779_2|574000

>mRNA_747-protein ID=mRNA_747-protein|Name=jgi.p|Nanoce1779_2|574000|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MNGMDTIAGSGSELQHTPKNILVTGGAGFIGSHVAILLAHKYPKYKIVVL
DKLDYCASLDNLSEVNRRRNFKFVKGNICSSDLVNFVLEEEEIDTVLHLA
AQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHGIKRFVHCSTDEVYGEG
TADQEPMFEDNVLEPTNPYAATKAGAEFLAKSYHRSFNLPVIITRGNNVY
GPHQYPEKLIPKFINLLQRARPLTLHGNGLNTRNFLYVTDVAKAFDCVLH
YGETGKIYNIGGTHEKTNVDVAKDLIRKMELLPSAADNVKAYPSAGDESA
AQEKREGLDTSVSSAVAAAAWDLPKDDDDSAYGPYLTFVEDRPFNDLRYS
INSEALRRLGWREEVSWEDGLAETIQWYIHKAQNRWGNIESALVPHPKGP
LPDDAA*

mRNA from alignment at scaffold_2:346443..348763+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_747 ID=mRNA_747|Name=jgi.p|Nanoce1779_2|574000|organism=Nannochloropsis oceanica|type=mRNA|length=2321bp|location=Sequence derived from alignment at scaffold_2:346443..348763+ (Nannochloropsis oceanica)
AACAGGCATCCGTCCCCCTTCTTCCCCCTTGACAATGAACGGCATGGACA
CCATCGCGGGTAGCGGCAGCGAGCTCCAGCATACGCCCAAAAACATCCTG
GTCACCGGGGGCGCGGGTTTCATGTACGGTTGGGTGGATATGCGGGGCAA
GGGGCTGACGACACATTACAGCAGCTAATGGATGTCCCTCCTTCTTTCTC
TCCTTCCCCCAAACACCGTAGCGGCTCACACGTGGCCATCTTGCTCGCGC
ACAAGTATCCCAAGTACAAGATCGTGGTGCTAGACAAGTTGGATTGTAAG
TCTTGTAGGTTTTTACGGCGTAGGGTTCTGCAGTCGCTTCCTTTGTGTCA
AAAGCGTTGTGGGTGTAGAGCGAGGAGAGACTATGCTAGGGGCACACGTC
GACAAAGTTGCCATGCGGTATCCCAGGCATTTACGCACACACCGCTTCAA
AAGCCTCACACTATGCAATTCAACTTTCTCCTTCCCAACCTCTTCCACAA
ACAATTAGATTGCGCGTCTTTGGACAACTTGTCTGAGGTCAACCGCCGCA
GAAATTTCAAATTTGTCAAGGGAAATATATGTTCCTCCGACCTCGTCAAT
TTTGTGCTCGAGGAAGAGGAGATCGACACGGTCCTCCACTTGGCGGCGCA
GACACATGTCGATAATAGCTTCGGGAACAGCTTCTCGTTTACCCAGAATA
ATATTTTAGGAACCCATGTTTTGCTCGAGAGCGCGAAGGTCCACGGCATC
AAGCGCTTTGTTCATTGCTCGACAGATGAGGTTTATGGTGAGGGTACCGC
GGACCAAGAGCCCATGTTTGAGGACAATGTGCTTGAGGTAGGAAAGAATC
TTTTGGGAAAGCATTGTGGGAAGAGAAGGAGATGTAAGCCGGGGATCGTA
TGCTTTGAGGGAGGGTGTCTTCGATATATATACATAGGGTTAGTGTGTGT
GTGAGTATGTATGTATGTTTGTCTGTGTGGGTGTGTCCCCTTTTACACAT
TCAAACCATTCGTCTCATTTGTATTACAACACAGCCGACCAACCCCTACG
CCGCTACCAAAGCTGGTGCCGAGTTTTTGGCTAAATCATACCACCGCTCC
TTCAACCTGCCCGTCATCATCACGCGTGGTAATAACGTCTACGGCCCACA
CCAGTACCCCGAGAAGCTCATCCCGAAGTTTATCAATTTGCTCCAGCGGG
CGCGGCCATTGACGCTGCACGGCAACGGCCTCAACACGCGAAATTTTCTG
TACGTGACCGATGTGGCAAAAGCTTTCGATTGCGTTTTACACTATGGCGA
GACTGGCAAAATCTACAACATTGGTGGCACGCACGAGAAGACGAATGTGG
ATGTGGCCAAGGATTTAATAAGAAAGATGGAACTTCTGCCCTCGGCTGCT
GACAATGTGAAGGCCTACCCGAGCGCTGGTGACGAGAGCGCAGCTCAGGA
GAAGAGGGAGGGGCTGGACACTTCGGTCTCTTCTGCTGTTGCCGCCGCCG
CTTGGGACCTCCCCAAGGACGATGATGATTCGGCTTACGGGCCCTATCTT
ACCTTTGTAGAAGATCGACCCTTCAATGACTTGCGCTATTCTATCAACAG
TGAGGCTCTGCGGCGCTTAGGCTGGCGCGAGGAGGTATCTTGGGAGGATG
GACTCGCTGAGACTATCCAGTGGTATATTCACAAGGCACAAAATCGTTGG
GGCAATATCGAATCGGCCTTGGTCCCGCATCCAAAAGGTCCTCTGCCGGA
CGACGCGGCTTAAGCGGTCTCACATGAATAATTGTTTGTAGGTGAGAGGG
CATGGTCGATGTGATTTGTTAGCAGTTGTCGGGTGAAATTGGGAATTATT
TTTGTGAGAAGGAAAGTGCCAAGGAGAAGGGCCGACGTTTGCACAAAGAC
GAAAATCAGCTCTGGTAGGCAAGAAAGACGGAAGAAATAAAGAATTAGCA
GGGAGATTTGGGAAATGGTGTTTTTACGTTGTGATCACCTGGGCTTCATT
TCTACGTTCTCGCGTGCGATAAGAAATATTGTATGCTCGAATACTTTCCA
TGCGATCTCGCACTCGTTCCCTGACGGGGCTGGAACGCGCAGTTTGCGTG
ATGAAGGAATTCACCGACCACTTAACCAAGATGCCACCGACAATTGGACC
ACCGAAAGCCTCGGACTCGGCACAATTTTCTCCTATGCCCTTTCTGAGGC
CATTTAATCGACGCGCGCATATTTCAGCAGCACATAAGAAATACATCGTT
ATACAAGAAGAACATCCAAAATAAATATAAATGTGACACGTGTCATTTCG
CTAACGATTTTTCGATTAAGT

Coding sequence (CDS) from alignment at scaffold_2:346443..348763+

>mRNA_747 ID=mRNA_747|Name=jgi.p|Nanoce1779_2|574000|organism=Nannochloropsis oceanica|type=CDS|length=4884bp|location=Sequence derived from alignment at scaffold_2:346443..348763+ (Nannochloropsis oceanica)
ATGAACGGCATGGACACCATCGCGGGTAGCGGCAGCGAGCTCCAGCATAC
GCCCAAAAACATCCTGGTCACCGGGGGCGCGGGTTTCATCGGCTCACACG
TGGCCATCTTGCTCGCGCACAAGTATCCCAAGTACAAGATCGTGGTGCTA
GACAAGTTGGATTATTGCGCGTCTTTGGACAACTTGTCTGAGGTCAACCG
CCGCAGAAATTTCAAATTTGTCAAGGGAAATATATGTTCCTCCGACCTCG
TCAATTTTGTGCTCGAGGAAGAGGAGATCGACACGGTCCTCCACTTGGCG
GCGCAGACACATGTCGATAATAGCTTCGGGAACAGCTTCTCGTTTACCCA
GAATAATATTTTAGGAACCCATGTTTTGCTCGAGAGCGCGAAGGTCCACG
GCATCAAGCGCTTTGTTCATTGCTCGACAGATGAGGTTTATGGTGAGGGT
ACCGCGGACCAAGAGCCCATGTTTGAGGACAATGTGCTTGAGCCGACCAA
CCCCTACGCCGCTACCAAAGCTGGTGCCGAGTTTTTGGCTAAATCATACC
ACCGCTCCTTCAACCTGCCCGTCATCATCACGCGTGGTAATAACGTCTAC
GGCCCACACCAGTACCCCGAGAAGCTCATCCCGAAGTTTATCAATTTGCT
CCAGCGGGCGCGGCCATTGACGCTGCACGGCAACGGCCTCAACACGCGAA
ATTTTCTGTACGTGACCGATGTGGCAAAAGCTTTCGATTGCGTTTTACAC
TATGGCGAGACTGGCAAAATCTACAACATTGGTGGCACGCACGAGAAGAC
GAATGTGGATGTGGCCAAGGATTTAATAAGAAAGATGGAACTTCTGCCCT
CGGCTGCTGACAATGTGAAGGCCTACCCGAGCGCTGGTGACGAGAGCGCA
GCTCAGGAGAAGAGGGAGGGGCTGGACACTTCGGTCTCTTCTGCTGTTGC
CGCCGCCGCTTGGGACCTCCCCAAGGACGATGATGATTCGGCTTACGGGC
CCTATCTTACCTTTGTAGAAGATCGACCCTTCAATGACTTGCGCTATTCT
ATCAACAGTGAGGCTCTGCGGCGCTTAGGCTGGCGCGAGGAGGTATCTTG
GGAGGATGGACTCGCTGAGACTATCCAGTGGTATATTCACAAGGCACAAA
ATCGTTGGGGCAATATCGAATCGGCCTTGGTCCCGCATCCAAAAGGTCCT
CTGCCGGACGACGCGGCTTAAATGAACGGCATGGACACCATCGCGGGTAG
CGGCAGCGAGCTCCAGCATACGCCCAAAAACATCCTGGTCACCGGGGGCG
CGGGTTTCATCGGCTCACACGTGGCCATCTTGCTCGCGCACAAGTATCCC
AAGTACAAGATCGTGGTGCTAGACAAGTTGGATTATTGCGCGTCTTTGGA
CAACTTGTCTGAGGTCAACCGCCGCAGAAATTTCAAATTTGTCAAGGGAA
ATATATGTTCCTCCGACCTCGTCAATTTTGTGCTCGAGGAAGAGGAGATC
GACACGGTCCTCCACTTGGCGGCGCAGACACATGTCGATAATAGCTTCGG
GAACAGCTTCTCGTTTACCCAGAATAATATTTTAGGAACCCATGTTTTGC
TCGAGAGCGCGAAGGTCCACGGCATCAAGCGCTTTGTTCATTGCTCGACA
GATGAGGTTTATGGTGAGGGTACCGCGGACCAAGAGCCCATGTTTGAGGA
CAATGTGCTTGAGCCGACCAACCCCTACGCCGCTACCAAAGCTGGTGCCG
AGTTTTTGGCTAAATCATACCACCGCTCCTTCAACCTGCCCGTCATCATC
ACGCGTGGTAATAACGTCTACGGCCCACACCAGTACCCCGAGAAGCTCAT
CCCGAAGTTTATCAATTTGCTCCAGCGGGCGCGGCCATTGACGCTGCACG
GCAACGGCCTCAACACGCGAAATTTTCTGTACGTGACCGATGTGGCAAAA
GCTTTCGATTGCGTTTTACACTATGGCGAGACTGGCAAAATCTACAACAT
TGGTGGCACGCACGAGAAGACGAATGTGGATGTGGCCAAGGATTTAATAA
GAAAGATGGAACTTCTGCCCTCGGCTGCTGACAATGTGAAGGCCTACCCG
AGCGCTGGTGACGAGAGCGCAGCTCAGGAGAAGAGGGAGGGGCTGGACAC
TTCGGTCTCTTCTGCTGTTGCCGCCGCCGCTTGGGACCTCCCCAAGGACG
ATGATGATTCGGCTTACGGGCCCTATCTTACCTTTGTAGAAGATCGACCC
TTCAATGACTTGCGCTATTCTATCAACAGTGAGGCTCTGCGGCGCTTAGG
CTGGCGCGAGGAGGTATCTTGGGAGGATGGACTCGCTGAGACTATCCAGT
GGTATATTCACAAGGCACAAAATCGTTGGGGCAATATCGAATCGGCCTTG
GTCCCGCATCCAAAAGGTCCTCTGCCGGACGACGCGGCTTAAATGAACGG
CATGGACACCATCGCGGGTAGCGGCAGCGAGCTCCAGCATACGCCCAAAA
ACATCCTGGTCACCGGGGGCGCGGGTTTCATCGGCTCACACGTGGCCATC
TTGCTCGCGCACAAGTATCCCAAGTACAAGATCGTGGTGCTAGACAAGTT
GGATTATTGCGCGTCTTTGGACAACTTGTCTGAGGTCAACCGCCGCAGAA
ATTTCAAATTTGTCAAGGGAAATATATGTTCCTCCGACCTCGTCAATTTT
GTGCTCGAGGAAGAGGAGATCGACACGGTCCTCCACTTGGCGGCGCAGAC
ACATGTCGATAATAGCTTCGGGAACAGCTTCTCGTTTACCCAGAATAATA
TTTTAGGAACCCATGTTTTGCTCGAGAGCGCGAAGGTCCACGGCATCAAG
CGCTTTGTTCATTGCTCGACAGATGAGGTTTATGGTGAGGGTACCGCGGA
CCAAGAGCCCATGTTTGAGGACAATGTGCTTGAGCCGACCAACCCCTACG
CCGCTACCAAAGCTGGTGCCGAGTTTTTGGCTAAATCATACCACCGCTCC
TTCAACCTGCCCGTCATCATCACGCGTGGTAATAACGTCTACGGCCCACA
CCAGTACCCCGAGAAGCTCATCCCGAAGTTTATCAATTTGCTCCAGCGGG
CGCGGCCATTGACGCTGCACGGCAACGGCCTCAACACGCGAAATTTTCTG
TACGTGACCGATGTGGCAAAAGCTTTCGATTGCGTTTTACACTATGGCGA
GACTGGCAAAATCTACAACATTGGTGGCACGCACGAGAAGACGAATGTGG
ATGTGGCCAAGGATTTAATAAGAAAGATGGAACTTCTGCCCTCGGCTGCT
GACAATGTGAAGGCCTACCCGAGCGCTGGTGACGAGAGCGCAGCTCAGGA
GAAGAGGGAGGGGCTGGACACTTCGGTCTCTTCTGCTGTTGCCGCCGCCG
CTTGGGACCTCCCCAAGGACGATGATGATTCGGCTTACGGGCCCTATCTT
ACCTTTGTAGAAGATCGACCCTTCAATGACTTGCGCTATTCTATCAACAG
TGAGGCTCTGCGGCGCTTAGGCTGGCGCGAGGAGGTATCTTGGGAGGATG
GACTCGCTGAGACTATCCAGTGGTATATTCACAAGGCACAAAATCGTTGG
GGCAATATCGAATCGGCCTTGGTCCCGCATCCAAAAGGTCCTCTGCCGGA
CGACGCGGCTTAAATGAACGGCATGGACACCATCGCGGGTAGCGGCAGCG
AGCTCCAGCATACGCCCAAAAACATCCTGGTCACCGGGGGCGCGGGTTTC
ATCGGCTCACACGTGGCCATCTTGCTCGCGCACAAGTATCCCAAGTACAA
GATCGTGGTGCTAGACAAGTTGGATTATTGCGCGTCTTTGGACAACTTGT
CTGAGGTCAACCGCCGCAGAAATTTCAAATTTGTCAAGGGAAATATATGT
TCCTCCGACCTCGTCAATTTTGTGCTCGAGGAAGAGGAGATCGACACGGT
CCTCCACTTGGCGGCGCAGACACATGTCGATAATAGCTTCGGGAACAGCT
TCTCGTTTACCCAGAATAATATTTTAGGAACCCATGTTTTGCTCGAGAGC
GCGAAGGTCCACGGCATCAAGCGCTTTGTTCATTGCTCGACAGATGAGGT
TTATGGTGAGGGTACCGCGGACCAAGAGCCCATGTTTGAGGACAATGTGC
TTGAGCCGACCAACCCCTACGCCGCTACCAAAGCTGGTGCCGAGTTTTTG
GCTAAATCATACCACCGCTCCTTCAACCTGCCCGTCATCATCACGCGTGG
TAATAACGTCTACGGCCCACACCAGTACCCCGAGAAGCTCATCCCGAAGT
TTATCAATTTGCTCCAGCGGGCGCGGCCATTGACGCTGCACGGCAACGGC
CTCAACACGCGAAATTTTCTGTACGTGACCGATGTGGCAAAAGCTTTCGA
TTGCGTTTTACACTATGGCGAGACTGGCAAAATCTACAACATTGGTGGCA
CGCACGAGAAGACGAATGTGGATGTGGCCAAGGATTTAATAAGAAAGATG
GAACTTCTGCCCTCGGCTGCTGACAATGTGAAGGCCTACCCGAGCGCTGG
TGACGAGAGCGCAGCTCAGGAGAAGAGGGAGGGGCTGGACACTTCGGTCT
CTTCTGCTGTTGCCGCCGCCGCTTGGGACCTCCCCAAGGACGATGATGAT
TCGGCTTACGGGCCCTATCTTACCTTTGTAGAAGATCGACCCTTCAATGA
CTTGCGCTATTCTATCAACAGTGAGGCTCTGCGGCGCTTAGGCTGGCGCG
AGGAGGTATCTTGGGAGGATGGACTCGCTGAGACTATCCAGTGGTATATT
CACAAGGCACAAAATCGTTGGGGCAATATCGAATCGGCCTTGGTCCCGCA
TCCAAAAGGTCCTCTGCCGGACGACGCGGCTTAA

Synonyms

Publications