jgi.p|Nanoce1779_2|598876, mRNA_7469 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598876
Unique NamemRNA_7469
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length654
Alignment locationscaffold_20:42122..42775 +

Link to JBrowse

Properties
Property NameValue
TranscriptId598962
TrackFilteredModels2
ProteinId598876
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:42122..42775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598876gene_7469Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598876mRNA_7469-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7469CDS_7469Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7469 ID=mRNA_7469|Name=jgi.p|Nanoce1779_2|598876|organism=Nannochloropsis oceanica|type=mRNA|length=654bp
CTCAGAAATAACGATGTGTATCAGTCAGTCCATACCTACATTTTTAATCA
TTTCGCTTGCACCCTCCCTCCTTCCTTCCTTCCCTCCTCCCTTCCCTCCT
TCTCTCCTCAACGAGCACCCAATCACAAGGTTTCTTCGTCCTTCTCATAC
ACTACCGCTTCTTGTTAGTCACCTTGGACCTGCTTTGTTTTCTCTACCTT
TTTTGGGGGGGGTCAAGTCACCCCCGTGGGCGTTTTTGTAGGCACTCATC
ACCATCATCTTCCCCTCTCTCTTTACACTCTCCATCTGCCGTTCGTCCAT
CATCCCGCTCTCAAATTCTCTCGTTTTGTGCAAACCCTCACGTTTCTTTC
TCTTCCTCCTCTTCCTTCCCGAAACGACTCCGGCATGACAAAGTGTGTGT
GGGTGTGTGCATGTGAACGTGAATGTATATATATGTTTATGTATATATAT
GTTTATGTATATACATTTATGTATATGCGTGCTGGGCTGGTGTGTGCTTT
CTCTTCATCACAATAGAGGCGACCACTCCTCTACCCCCCTCCCACTCTCC
CTTCCTCCCTCCTTCGCTGTATTCTCGGTGGGCCAGATCTAAACTTCTTA
CAACAACTACAACTACTTCTTTCACTATAATCGATGCAAGGCATTCCCTC
CCTC
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protein sequence of jgi.p|Nanoce1779_2|598876

>mRNA_7469-protein ID=mRNA_7469-protein|Name=jgi.p|Nanoce1779_2|598876|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MCISQSIPTFLIISLAPSLLPSFPPPFPPSLLNEHPITRFLRPSHTLPLL
VSHLGPALFSLPFLGGVKSPPWAFL*
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mRNA from alignment at scaffold_20:42122..42775+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7469 ID=mRNA_7469|Name=jgi.p|Nanoce1779_2|598876|organism=Nannochloropsis oceanica|type=mRNA|length=654bp|location=Sequence derived from alignment at scaffold_20:42122..42775+ (Nannochloropsis oceanica)
CTCAGAAATAACGATGTGTATCAGTCAGTCCATACCTACATTTTTAATCA
TTTCGCTTGCACCCTCCCTCCTTCCTTCCTTCCCTCCTCCCTTCCCTCCT
TCTCTCCTCAACGAGCACCCAATCACAAGGTTTCTTCGTCCTTCTCATAC
ACTACCGCTTCTTGTTAGTCACCTTGGACCTGCTTTGTTTTCTCTACCTT
TTTTGGGGGGGGTCAAGTCACCCCCGTGGGCGTTTTTGTAGGCACTCATC
ACCATCATCTTCCCCTCTCTCTTTACACTCTCCATCTGCCGTTCGTCCAT
CATCCCGCTCTCAAATTCTCTCGTTTTGTGCAAACCCTCACGTTTCTTTC
TCTTCCTCCTCTTCCTTCCCGAAACGACTCCGGCATGACAAAGTGTGTGT
GGGTGTGTGCATGTGAACGTGAATGTATATATATGTTTATGTATATATAT
GTTTATGTATATACATTTATGTATATGCGTGCTGGGCTGGTGTGTGCTTT
CTCTTCATCACAATAGAGGCGACCACTCCTCTACCCCCCTCCCACTCTCC
CTTCCTCCCTCCTTCGCTGTATTCTCGGTGGGCCAGATCTAAACTTCTTA
CAACAACTACAACTACTTCTTTCACTATAATCGATGCAAGGCATTCCCTC
CCTC
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Coding sequence (CDS) from alignment at scaffold_20:42122..42775+

>mRNA_7469 ID=mRNA_7469|Name=jgi.p|Nanoce1779_2|598876|organism=Nannochloropsis oceanica|type=CDS|length=228bp|location=Sequence derived from alignment at scaffold_20:42122..42775+ (Nannochloropsis oceanica)
ATGTGTATCAGTCAGTCCATACCTACATTTTTAATCATTTCGCTTGCACC
CTCCCTCCTTCCTTCCTTCCCTCCTCCCTTCCCTCCTTCTCTCCTCAACG
AGCACCCAATCACAAGGTTTCTTCGTCCTTCTCATACACTACCGCTTCTT
GTTAGTCACCTTGGACCTGCTTTGTTTTCTCTACCTTTTTTGGGGGGGGT
CAAGTCACCCCCGTGGGCGTTTTTGTAG
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Synonyms
Publications