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Properties
| Property Name | Value |
|---|
| TranscriptId | 598947 |
| Track | FilteredModels2 |
| ProteinId | 598861 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:33584..38098 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7466 ID=mRNA_7466|Name=jgi.p|Nanoce1779_2|598861|organism=Nannochloropsis oceanica|type=mRNA|length=2930bp
AGACACGCATAGGACCAAGCCAGAGAAAGAGGCGCACATCAGATCACACG
GGCGGGGGCAAGCGATCCACCACTACCACGACAAGCACAAATAAGCGAAC
GACCGAGGCAGCAAGAGAAGCGACGCAGTCATGGGGGGCCGCAAGAAGGC
ATCTAAAAAGGTAGCCAAGAAGAAGCGCACGGGTCTCCGCTCGGTATTCA
AATGCGTCCAGTGTAACAACGACGGCGTGGTAGAATGCGTCATACGAAAA
GAAGCAGGCACGGGCGAGGTGGTGTGTCGGGTCTGTGGGGCCTCCTTTAT
TTGCGCAGTCAATTATCTGTCAAAGCCCATCGATGTGTACTGTGAGTGGA
TCGACGAATGTGAGCGCATCAGCGGAGAGCAGGAGAAGGTGGAGGGAGAT
GAGGGGGAGGAGGAGGATGTATAGAAGCGGGGAAGGATGAAGAAGGAGGG
GTATAGATGGTCAGACGTAAAAGAAAGACTTTACACAGGTATGTGTAGGT
TTCCGGTTATAAATTTGTTCCCTCGTGTTCCCCCTTGTTTCTTGCATAAA
AACAGACACAATGTAAGAAGACACAAGAACTGCAGATAGTAGAGAAGACG
ATAATGGGGCTAACAAATAATTTTGGGATGTACTGGTATCTGCGCGCGCA
TGCGTGTGTATATACACACACCCATCTATCCATCTAATTATCTATCTTAC
TATCTTTGTGTTTGTGTGCTTCCAACCAGCCTTCCATACCCGGAAATTCG
GTCGCAACCCGTTTTGCCCGCCAATGCAAATATTCATTTCGCCAAATAAT
TCAAGTCCCCGTGTCTTGTCCCCCGACATAGATGCTTGGTGAATGGTATA
CTTTGGTATGCTGCCCTCCGGAATTATTTCCGTTTAAGCTGCCTGACAAA
GGTCTTCGGGAACGTCCATGGAAAGAAGTAATTGCCCCAAATCGTTCTTT
TTCCTTCCTCTTTCCCTTCTCCGACCGTTTGCGATCGAATTCGCACGTTA
GTGCACTCCCACCCATGTAGATGCTCAGGGAAGGGCTACGGCTTGGTCGA
TGGCCCCTCTACGACCCGTAGCTTTTCACCCCCTTCCTCCTTGTTTCACT
TGTATTCCTTCCACCACCACGCACAATTGTATTTTCCCCACCACCACAGA
CAGAAGACGCCTTGGGCCTTTCTGCTGCCTCCGCAAGCCTAATAGACTTA
CTTTCTGGCCGTCCCGCAGGCGTACAGCGACAGCTAGGAGCAACCACAGC
AAGCAAGCCCCCACTTTATCGTCACCTCGCCTCGCCACTTTAACCCCACC
TGTCTGAACCATGGGTCAAGGCGGTTCCAAGGCACCCTCTCCCACCTCGG
CGACCCCTACCCCTTCCGTCCCCGCTCCGCCCACCACGAAAAGCAATGCT
GTCCCCTCCACAATCTCCGACACCAAAGCACCCACGTCCACCACAAATAT
CCCTAACCCCCGCCAAGTCGCGACCGCCACCGAGCACCGCCAAGGCAACG
GAAGCCAACCCTCGCTCGCTCGGAAAATTACCCTCTACGCCAACGAAACC
AAATTCCAACTCACTCGCAAATTGACGACCATTGCAGAGGAAACCCGAAC
AGTGCTCGAACGCAACAACACGGTGGTGTCCATGGCTTCCACCGGCGTCC
ACGTTATCACCGACGCCGGCATCCATCTTCCCCATGAGTTGCACCTCCCT
AAGACAGGTCTCTCGCACCCCGCGAACGCCGCGCTCGGCGCCACCACTTC
TGCCATCGTGGCTGCCTCTATCGTCAGCCCTATGATCACAATCATCGATC
TTGCCATCATGAAAAGCCAAGTAGAAAAAATAGGGGTGGGGCAAGCCGTC
AAAAAGACCGCGGGTGATTTAATTGCCGGTCGGGCCAAATGGTTCCCGGC
TACCAAGATCATGGGAGGGGTGTACTTTAGTACCTATATGGCAGCCAATG
GCACGGAGGCCTGGTGCATGGAAAATGGAATTGATTACAAGATTCCCACC
GCCATTGCTACTTCGGTCACCAACATCGTCGGCGTGGCGGCCAAGGACCA
GGCGTTCGCACGGATGATGAGCAAGGCCCCAAGCTCCTTCCCCTTGTCGT
CCTACGTCCTGTTTGCACTGCGCGATGGGTTGACCGTCACCTCCACGTTT
GTCCTCAAGAACACCGTCCGTGATCATCTGGTGGAAGACTACAACCTGCG
CTCCAGCACGGCCGACCTCATGGCGTCTTTCGCCGTGCCTATGCTCGCGC
AAATTCCTTCGTCTCCCCTCCACATCTTGTCCATGGACCTCTACTTGCGG
AAGGAGGCCACCTGGGGCAGCCGCGTCGCGGAGATTGCTAGAGGGTACAG
GAATGTGGTCACGGGCCGTGTTATGCGGATCATTCCGGCGTTTGGCGTGG
GCGGTGTGGTGAACGATATGGTGAAGGAGGCCTTCGAGGACGACGAAGAA
GACATGTTTCTTCACATGGACCGCGGGCCTCCGACGCACCGGAAGACGGC
ATAAAAAACGATCAAGTATCTATATTTCGGGTTAAGGTTGAGAGGGTGAA
GGAAAAAATAAGATAAGGGAACGAGAGAGGTTTTTGGTAATTGAGTGTCC
GGATGTGCTATATATACATATGCATGTATTTCATTTACTTTTTCACGTGA
GTAATTTGAGACAAGTGCATGTGAGGAAAAGAATTGATTAGTTCTTTGTT
TTCAAGGACAAAAGGGATCCGACAGATGCCAAAGGAAAAAAAGAAGGGTG
GCAAAGGGTTAGGGGAAGAGCAAAGGGTTAGGGGAAGAGTGGGAGAGTGG
GCCCGGGAGAGGAAGGCCTCTGTCTGAATTTTGACTACTTGTATGTAACA
TTGTATCATAAGTAAAAGTAATAGGTAGGAAACCGGGGGCGATGGTAAGA
AAGAAGATATCGTATTAGAAAGAGTTGAAA back to topprotein sequence of jgi.p|Nanoce1779_2|598861 >mRNA_7466-protein ID=mRNA_7466-protein|Name=jgi.p|Nanoce1779_2|598861|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MGGRKKASKKVAKKKRTGLRSVFKCVQCNNDGVVECVIRKEAGTGEVVCR
VCGASFICAVNYLSKPIDVYCEWIDECERISGEQEKVEGDEGEEEDV* back to topmRNA from alignment at scaffold_20:33584..38098+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7466 ID=mRNA_7466|Name=jgi.p|Nanoce1779_2|598861|organism=Nannochloropsis oceanica|type=mRNA|length=4515bp|location=Sequence derived from alignment at scaffold_20:33584..38098+ (Nannochloropsis oceanica)
AGACACGCATAGGACCAAGCCAGAGAAAGAGGCGCACATCAGATCACACG
GGCGGGGGCAAGCGATCCACCACTACCACGACAAGCACAAATAAGCGAAC
GACCGAGGCAGCAAGAGAAGCGACGCAGTCATGGGGGGCCGCAAGAAGGT
GCGTGGTGTGGACATGAGTATGCGGACGGGGAAGAGAAAGAGTAAGAGGA
AGATGAGGAAGAGGAAAAGGAGAAGAGAAAGGAGCAAAAATCCCTCTTTC
AGGTATGTACTGTACTGATCCTATTCCTATTGCTGATACTGATCCAATTC
CTATTGCTGATGCTCCTGCATACCACTACACACAAAACCTCTGTCTTTCT
AGCGTCACCGCACCCTCACTTCGACCAGCCTCAAGCCCTCATGCCCTCTC
TCCGTCCCTCCGTCCCTCCCCCCTCTGTCCTTCCCCCCATTCCCCCTTTC
CATCCCTCCCATCCTTTCCAAGGCATCTAAAAAGGTAGCCAAGAAGAAGC
GCACGGGTCTCCGCTCGGTATTCAAATGCGTCCAGTGTAACAACGACGGC
GTGGTAGAATGCGTCATGTGCGTAGACAAATCTCTCCCCTTCTTTCGCTC
CTTCCCCTCCCACCTCCCTCCACCCTGTCAACCCACCCTCCATAACTACA
CTCATTTTCTCGTTTCACTAATCACCCACTTCTCGACCATCACCTTTCCT
CTTCCCTCCTTTTCCTCTCTTCTCTAGACGAAAAGAAGCAGGCACGGGCG
AGGTGGTGTGTCGGGTCTGTGGGGCCTCCTTTATTTGCGCAGTCAATTGT
ACGTGAGGGAGAGAGAGATGGAAGAAAAAGAGGGAAGGTGGGGGAAAACA
CAAAAAATACCTCGCCCCTCTCCCATCTCCCGTTCTCCTTGCCGTCTCCT
ATCACATGCAAAGCCAGCTCGTCAAGTTTCTCAATGCTCTCATACCCGTA
ATATTCAATATTCATGTTAATGACCCTTTTCTCCCTCCTTCCACCCTCCC
AGATCTGTCAAAGCCCATCGATGTGTACTGTGAGTGGATCGACGAATGTG
AGCGCATCAGCGGAGAGCAGGAGAAGGTGGAGGGAGATGAGGGGGAGGAG
GAGGATGTATAGAAGCGGGGAAGGATGAAGAAGGAGGGGTATAGATGGTC
AGACGTAAAAGAAAGACTTTACACAGGTATGTGTAGGTTTCCGGTTATAA
ATTTGTTCCCTCGTGTTCCCCCTTGTTTCTTGCATAAAAACAGACACAAT
GTAAGAAGACACAAGAACTGCAGATAGTAGAGAAGACGATAATGGGGCTA
ACAAATAATTTTGGGATGTACTGGTATCTGCGCGCGCATGCGTGTGTATA
TACACACACCCATCTATCCATCTAATTATCTATCTTACTATCTTTGTGTT
TGTGTGCTTCCAACCAGCCTTCCATACCCGGAAATTCGGTCGCAACCCGT
TTTGCCCGCCAATGCAAATATTCATTTCGCCAAATAATTCAAGTCCCCGT
GTCTTGTCCCCCGACATAGATGCTTGGTGAATGGTATACTTTGGTATGCT
GCCCTCCGGAATTATTTCCGTTTAAGCTGCCTGACAAAGGTCTTCGGGAA
CGTCCATGGAAAGAAGTAATTGCCCCAAATCGTTCTTTTTCCTTCCTCTT
TCCCTTCTCCGACCGTTTGCGATCGAATTCGCACGTTAGTGCACTCCCAC
CCATGTAGATGCTCAGGGAAGGGCTACGGCTTGGTCGATGGCCCCTCTAC
GACCCGTAGCTTTTCACCCCCTTCCTCCTTGTTTCACTTGTATTCCTTCC
ACCACCACGCACAATTGTATTTTCCCCACCACCACAGACAGAAGACGCCT
TGGGCCTTTCTGCTGCCTCCGCAAGCCTAATAGACTTACTTTCTGGCCGT
CCCGCAGGCGTACAGCGACAGCTAGGAGCAACCACAGCAAGCAAGCCCCC
ACTTTATCGTCACCTCGCCTCGCCACTTTAACCCCACCTGTCTGAACCAT
GGGTCAAGGCGGTTCCAAGGCACCCTCTCCCACCTCGGCGACCCCTACCC
CTTCCGTCCCCGCTCCGCCCACCACGAAAAGCAATGCTGTCCCCTCCACA
ATCTCCGACACCAAAGCACCCACGTCCACCACAAATATCCCTAACCCCCG
CCAAGTCGCGACCGCCACCGAGCACCGCCAAGGCAACGGAAGCCAACCCT
CGCTCGCTCGGAAAATTACCCTCTACGCCAACGAAACCAAATTCCAACTC
ACTCGCAAATTGACGACCATTGCAGAGGAAACCCGAACAGTGCTCGAACG
CAACAACACGGTGGTGTCCATGGCTTCCACCGGCGTCCACGTTATCACCG
ACGCCGGCATCCATCTTCCCCATGAGTTGCACCTCCCTAAGACAGGTCTC
TCGCACCCCGCGAACGCCGCGCTCGGCGCCACCACTTCTGCCATCGTGGC
TGCCTCTATCGTCAGCCCTATGATCACAATCATCGATCTTGCCATCATGA
AAAGCCAAGTAGAAAAAATAGGGGTGGGGCAAGCCGTCAAAAAGACCGCG
GGTGATTTAATTGCCGGTCGGGCCAAATGGTTCCCGGCTACCAAGATCAT
GGGAGGGGTGTACTTTAGTACCTATATGGCAGCCAATGGCACGGAGGCCT
GGTGCATGGTAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTGG
TTCTGGGGTATAGGTCACCTGAATCACCATTTAAGTCGTTTCTCCTTTAC
TGTTGGGACATTCTTCTCACGTAGACCTCCCTCCCTCCCTCCTCCCCTCC
CTCCCCTCCATCAGGAAAATGGAATTGATTACAAGATTCCCACCGCCATT
GCTACTTCGGTCACCAACATCGTCGGCGTGGCGGCCAAGGACCAGGCGTT
CGCACGGATGATGAGCAAGGCCCCAAGCTCCTTCCCCTTGTCGTCCTACG
TCCTGTTTGCACTGCGCGATGGGTTGACCGTCACCTCCACGTTTGTCCTC
AAGGTTACATAATGATTAGAATCAGCCCCCCTTTCCCCTCCCTCCCCTCC
CTCCTTGCCACTCCTGCTTGTAGGACGTTCCGTTGATCATTCCATCCCTC
CCTCCCACACTCCTTCCCTACCACACTCCTTCCCTCCTTCCCTCCTTCCC
TCCTTCCCTCCCTCAGAACACCGTCCGTGATCATCTGGTGGAAGACTACA
ACCTGCGCTCCAGCACGGCCGACCTCATGGCGTCTTTCGCCGTGCCTATG
CTCGCGCAAATTCCTTCGTCTCCCCTCCACATCTTGTCCATGGACCTCTA
CTTGCGGAAGGGTAAGCAGGGGGCGTTGGGAGGGAGGGCAGGAGAGAGGG
AGGGAAGGAGTGGGATTTTCATGCCTTTTCTTGCGTGTGACTCTCTTAAT
CTCCCTACCCCCCTCCTCCCTCTTTCGGATGTGCCTATGCCTCAATGGTG
ATAGCGGGATTTAACCGGCTGTCCCTTATCACGTGAGGCAGAAATTTGTC
TTCCTCTAATTGTTTTCTCTCTCTCTTTCACACACACACACACACACACA
CACACACAACCCTCCCTCCCTCCTTTCCTCCTTTCCTTCCTCCCTTCTCT
CCCCCTCAGAGGCCACCTGGGGCAGCCGCGTCGCGGAGATTGCTAGAGGG
TACAGGAATGTGGTCACGGGCCGTGTTATGCGGATCATTCCGGCGTTTGG
CGTGGGCGGTGTGGTGAACGATGTGCGTGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGAGGTAGCGTGTGTCGCTGAACACTGTCACCGTATGGAGC
CCACAGATGAGGAGCATCGGTGCCAGAGATAAAAGGATAGGGTGAAGGAC
ACGTGAGGGAAGACTTGTGACAAAACAAAGGAGCACTTAAACAAACATCC
CACACGTACACATACATACACAACACACACACATACATACACAACACACT
CACTCTTTCCTATCCCCCTCCTTCCTCATCGACTCCTCATTACTACTGAC
AGATGGTGAAGGAGGCCTTCGAGGACGACGAAGAAGACATGTTTCTTCAC
ATGGACCGCGGGCCTCCGACGCACCGGAAGACGGCATAAAAAACGATCAA
GTATCTATATTTCGGGTTAAGGTTGAGAGGGTGAAGGAAAAAATAAGATA
AGGGAACGAGAGAGGTTTTTGGTAATTGAGTGTCCGGATGTGCTATATAT
ACATATGCATGTATTTCATTTACTTTTTCACGTGAGTAATTTGAGACAAG
TGCATGTGAGGAAAAGAATTGATTAGTTCTTTGTTTTCAAGGACAAAAGG
GATCCGACAGATGCCAAAGGAAAAAAAGAAGGGTGGCAAAGGGTTAGGGG
AAGAGCAAAGGGTTAGGGGAAGAGTGGGAGAGTGGGCCCGGGAGAGGAAG
GCCTCTGTCTGAATTTTGACTACTTGTATGTAACATTGTATCATAAGTAA
AAGTAATAGGTAGGAAACCGGGGGCGATGGTAAGAAAGAAGATATCGTAT
TAGAAAGAGTTGAAA back to topCoding sequence (CDS) from alignment at scaffold_20:33584..38098+ >mRNA_7466 ID=mRNA_7466|Name=jgi.p|Nanoce1779_2|598861|organism=Nannochloropsis oceanica|type=CDS|length=1176bp|location=Sequence derived from alignment at scaffold_20:33584..38098+ (Nannochloropsis oceanica)
ATGGGGGGCCGCAAGAAGGCATCTAAAAAGGTAGCCAAGAAGAAGCGCAC
GGGTCTCCGCTCGGTATTCAAATGCGTCCAGTGTAACAACGACGGCGTGG
TAGAATGCGTCATACGAAAAGAAGCAGGCACGGGCGAGGTGGTGTGTCGG
GTCTGTGGGGCCTCCTTTATTTGCGCAGTCAATTATCTGTCAAAGCCCAT
CGATGTGTACTGTGAGTGGATCGACGAATGTGAGCGCATCAGCGGAGAGC
AGGAGAAGGTGGAGGGAGATGAGGGGGAGGAGGAGGATGTATAGATGGGG
GGCCGCAAGAAGGCATCTAAAAAGGTAGCCAAGAAGAAGCGCACGGGTCT
CCGCTCGGTATTCAAATGCGTCCAGTGTAACAACGACGGCGTGGTAGAAT
GCGTCATACGAAAAGAAGCAGGCACGGGCGAGGTGGTGTGTCGGGTCTGT
GGGGCCTCCTTTATTTGCGCAGTCAATTATCTGTCAAAGCCCATCGATGT
GTACTGTGAGTGGATCGACGAATGTGAGCGCATCAGCGGAGAGCAGGAGA
AGGTGGAGGGAGATGAGGGGGAGGAGGAGGATGTATAGATGGGGGGCCGC
AAGAAGGCATCTAAAAAGGTAGCCAAGAAGAAGCGCACGGGTCTCCGCTC
GGTATTCAAATGCGTCCAGTGTAACAACGACGGCGTGGTAGAATGCGTCA
TACGAAAAGAAGCAGGCACGGGCGAGGTGGTGTGTCGGGTCTGTGGGGCC
TCCTTTATTTGCGCAGTCAATTATCTGTCAAAGCCCATCGATGTGTACTG
TGAGTGGATCGACGAATGTGAGCGCATCAGCGGAGAGCAGGAGAAGGTGG
AGGGAGATGAGGGGGAGGAGGAGGATGTATAGATGGGGGGCCGCAAGAAG
GCATCTAAAAAGGTAGCCAAGAAGAAGCGCACGGGTCTCCGCTCGGTATT
CAAATGCGTCCAGTGTAACAACGACGGCGTGGTAGAATGCGTCATACGAA
AAGAAGCAGGCACGGGCGAGGTGGTGTGTCGGGTCTGTGGGGCCTCCTTT
ATTTGCGCAGTCAATTATCTGTCAAAGCCCATCGATGTGTACTGTGAGTG
GATCGACGAATGTGAGCGCATCAGCGGAGAGCAGGAGAAGGTGGAGGGAG
ATGAGGGGGAGGAGGAGGATGTATAG back to top
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