jgi.p|Nanoce1779_2|156667, mRNA_7465 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|156667
Unique Name	mRNA_7465
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1791
Alignment location	scaffold_20:27839..31238 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	156753
Track	FilteredModels2
ProteinId	156667

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:27839..31238 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|156667	gene_7465	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|156667	mRNA_7465-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7465	CDS_7465	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:27839..31238+
coding sequence from alignment at scaffold_20:27839..31238+

mRNA sequence

>mRNA_7465 ID=mRNA_7465|Name=jgi.p|Nanoce1779_2|156667|organism=Nannochloropsis oceanica|type=mRNA|length=1791bp
GCAACGACGTAGACATGCCGCCAAGTAGAGATAAAGACGGAGTAGCGGAA
GGAGGAGGAACGGGAAGCAGCGACATAGCACCTACAGCCCCGGCAGCAGT
AGCAGCAGTTGTAGCAGCAGTAGCAGAAGGAGCAGCAGTGCCGGCTAGTT
GTGATGCCAGCAGCAGCACCAGCAGCAGCAAATCAAATGAGATTTGTAAG
CAGAATGGCAAGCACTCTGCACCAGACAAGAAGGCAACGACAACGACAGC
AGAACCAGCGGCAACAAAACCAGCAGCAGCAGCAGCGGCAGCAGGCAAGC
CAAGTAGCGCCGCTGCTCGTCCCTCGTCCTTGTCCTTGTCCTCGTCCACA
TCGCTTTCCTCCTCCTCCTCATCCACCAAACCCAGCACCGGCACGAATGC
CACCCGCAGCACCAGCCCTCTCCCGTCTCATGTCCGCAGCTCCTCCATTA
CCACCCCCCCCCCCCCTTCCCCGTTCCTCCTCCACCACTTCCTCCTCCTC
GTCCTCCTCCTCGTCCTTCTCCGCCTTGACCCCCGCCCGGATCGCGGCAG
CCCGTCAAGCCCTTGAGCACTATCTTTCCCTCTCCTACCTGCAATCAGAT
GGCGGTTTCCTCGTCTCACATATGAATCCGCAAATGTTCATCCCGCTCTC
CATCCTCTCCTCCCTGCCATCCCTGGCCTCCCTCCCCCCCTCTCCCCCCC
TCCTTGTCGCCGCCCTCATGGACCATCCCACCCTTGCCCTGAGCGAGGAC
CAAAGCAGCGTGCGGCCCAACATCCACGTCGAAAGAACGACTATCATCCT
CCGAGAGGTGAGTAGCAACACGCCTGAGGAGGAGTTGAAGCAGAAATTGT
TTTCGTGGGATGGGTGTCCAGAGGTGAGGGCTTTGAAGAAGGATGTGGAG
AACACGTGGTTCGTCTTGTTTGCGACAGAGAAGGACGCAAAAAAGGCGCT
GGAAAAGCTCAGGGAGATGCTGTGGGAGGGAGGGGTGGTGAAGGCCCGCC
TGAAGAGCGAAAATGTGATCAATAAGGCCTTTTTTTCGGGAGGGGGAGGA
GGGCAGGGAGGAGGGAGGGAGGGAGGGAGGTTTGCCGGCGGAGGAGGTGG
GGGGGGGAGGAGGAGGGGGAGGAGGTGGAGGAGGTGTAGGGTATATAATG
AATGGTGGAGGAGGAGGGGGCCCAAGAGGAGGAGGAGGTGTGGGGGGAGG
GATGATGAATGGAGGTGTACATCATCATTATCAGCAGTACCACCACCATC
ACCAGCAGCAGCAACAGTCACAAGGCAGTCAGTCCTTTCCGTCCCCATCC
TCCTCCTCGTCCTCATCCTCTTCGTCTTTCCAGCCGTCACACCTCCCCCC
TCACCACTTGGGAGGTGGAGGGAGGGAGGGAGGAGGAGGGCCCTATGTGT
ATATGAATGGAGGAGGTGGAGGAGGGATGTACGTGGTGCCGAATGGCATG
ACCTCCTCCGGTTCCGCCGGTTATGACAGCGGCTCATTTCCCCCCCCTGC
CCGGTGGGGAGGGAGGAAAAGAGGGAGGGATCGCGGTTTCCTCCTCGGCT
GCTGCTTCCACTGCGTCGTCCACCGTCACCACCAAGGCGGGCGAAAGCAG
CAGCTTTGCGGCCGCTTTGTTGGCGCGAAGCAGCAACAGTGGCAGCAGTG
GCAGCAGTGGCAGCAGTGGCAGCAGCAGCAGCAGCAACGCTGGTCCAGCC
CCCTTGCCTTCCTCTCCCTCCCTCTCACCCTCGACATCGACGGCAGGGAA
GTCACGTCCTCATGTAAAGGGTGAGGAAAAAACAGCGGTGG

protein sequence of jgi.p|Nanoce1779_2|156667

>mRNA_7465-protein ID=mRNA_7465-protein|Name=jgi.p|Nanoce1779_2|156667|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MPAAAPAAANQMRFVSRMASTLHQTRRQRQRQQNQRQQNQQQQQRQQASQ
VAPLLVPRPCPCPRPHRFPPPPHPPNPAPARMPPAAPALSRLMSAAPPLP
PPPPLPRSSSTTSSSSSSSSSFSALTPARIAAARQALEHYLSLSYLQSDG
GFLVSHMNPQMFIPLSILSSLPSLASLPPSPPLLVAALMDHPTLALSEDQ
SSVRPNIHVERTTIILREVSSNTPEEELKQKLFSWDGCPEVRALKKDVEN
TWFVLFATEKDAKKALEKLREMLWEGGVVKARLKSENVINKAFFSGGGGG
QGGGREGGRFAGGGGGGGRRRGRRWRRCRVYNEWWRRRGPKRRRRCGGRD
DEWRCTSSLSAVPPPSPAAATVTRQSVLSVPILLLVLILFVFPAVTPPPS
PLGRWREGGRRRALCVYEWRRWRRDVRGAEWHDLLRFRRL*

mRNA from alignment at scaffold_20:27839..31238+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7465 ID=mRNA_7465|Name=jgi.p|Nanoce1779_2|156667|organism=Nannochloropsis oceanica|type=mRNA|length=3400bp|location=Sequence derived from alignment at scaffold_20:27839..31238+ (Nannochloropsis oceanica)
GCAACGACGTAGACATGCCGCCAAGTAGAGATAAAGACGGAGTAGCGGAA
GGAGGAGGAACGGGAAGCAGCGACATAGCACCTACAGCCCCGGCAGCAGT
AGCAGCAGTTGTAGCAGCAGTAGCAGAAGGAGCAGCAGTGCCGGCTAGTT
GTGATGCCAGCAGCAGCACCAGCAGCAGCAAATCAAATGAGATTTGTAAG
CAGAATGGCAAGCACTCTGCACCAGACAAGAAGGCAACGACAACGACAGC
AGAACCAGCGGCAACAAAACCAGCAGCAGCAGCAGCGGCAGCAGGCAAGC
CAAGTAGCGCCGCTGCTCGTCCCTCGTCCTTGTCCTTGTCCTCGTCCACA
TCGCTTTCCTCCTCCTCCTCATCCACCAAACCCAGCACCGGCACGAATGC
CACCCGCAGCACCAGCCCTCTCCCGTCTCATGTCCGCAGCTCCTCCATTA
CCACCCCCCCCCCCCCTTCCCCGTTCCTCCTCCACCACTTCCTCCTCCTC
GTCCTCCTCCTCGTCCTTCTCCGCCTTGACCCCCGCCCGGATCGCGGCAG
CCCGTCAAGCCCTTGAGCACTATCTTTCCCTCTCCTACCTGCAATCAGAT
GGCGGTTTCCTCGTCTCACATATGAATCCGCAAATGTTCATCCCGCTCTC
CATCCTCTCCTCCCTGCCATCCCTGGCCTCCCTCCCCCCCTCTCCCCCCC
TCCTTGTCGCCGCCCTCATGGACCATCCCACCCTTGCCCTGAGCGAGGAC
CAAAGCAGCGTGCGGCCCAACATCCACGTCGAAAGAACGACTATCATCCT
CCGAGAGGTGAGTAGCAACACGCCTGAGGAGGAGTTGAAGCAGAAATTGT
TTTCGTGGGATGGGTGTCCAGAGGTGAGGGCTTTGAAGAAGGATGTGGAG
AACACGTGGTTCGTCTTGTTTGCGACAGAGAAGGACGCAAAAAAGGCGCT
GGAAAAGCTCAGGGAGATGCTGTGGGAGGGAGGGGTGGTGAAGGCCCGCC
TGAAGAGCGAAAATGTGATCAATAAGGCCTTTTTTTCGGGAGGGGGAGGA
GGGCAGGGAGGAGGGAGGGAGGGAGGGAGGTTTGCCGGCGGAGGAGGTGG
GGGGGGGAGGAGGAGGGGGAGGAGGTGGAGGAGGTGTAGGGTATATAATG
AATGGTGGAGGAGGAGGGGGCCCAAGAGGAGGAGGAGGTGTGGGGGGAGG
GATGATGAATGGAGGTGTACATCATCATTATCAGCAGTACCACCACCATC
ACCAGCAGCAGCAACAGTCACAAGGCAGTCAGTCCTTTCCGTCCCCATCC
TCCTCCTCGTCCTCATCCTCTTCGTCTTTCCAGCCGTCACACCTCCCCCC
TCACCACTTGGGAGGTGGAGGGAGGGAGGGAGGAGGAGGGCCCTATGTGT
ATATGAATGGAGGAGGTGGAGGAGGGATGTACGTGGTGCCGAATGGCATG
ACCCCCGTCTACGGAGGAGGGGGAGGAAGAGGGGGAGGAAGGGGCGGAGG
AAGGGGCGGAGGTGTGTTTCAGTACATGAATTCCGGATATGTAGGAGGGG
GAGGCAGAGGAGCGGGGGGGGGGGGGGGGGGGGAGAGGAGCAGGAGGACA
GCAGCAGCAGCATCACCATGGGGCGGGTCCAATACCGGTAGCTGTGTCAG
GCAGTGGAGGGGGAGGGGGAGGGGGGATATATGGAGGAGGGTATGGAGGA
GGAGGGGGGTTTCGAGGAGGGAGAGGAGGAGGAGGGAATGGCGGAGGGGG
GGAGGAAGGGGGATATGCTGGTGCAGGGCCCGGCCATTTGGCACCTCTGC
ATATGGCGTACGGAGGCATGGTGCCTCCGCCTATCGTAGTGGGAGGAGGA
GGAGGGGGGAAGGGGGGGGGGGGGGTTACAGCAGCAGCAGCAGCAGCAGC
AAGGAGGTGGAGGATTCTACCAGCAACAGCAACAGCAGCTCCCGCGGCAG
TATTATATGCACCCACAGCACCCTCAACAGCAGCATCAGCACCCTCAACA
GCAGCATCAGCATCATCACCAGCAGCAGCAGCAGCAGGGATTGACGCCGA
CTGTGGCGCATACCACCTCTCCCTCCTCGTTGTCCTCGTCGTCCTCCTTC
CCCTTGATGAGCAGCAGCGCGAACGGCTCTCAAAAGATGGACGGTGGCAA
CAACAGCAGCAGCAGTAGTAGCGCGACGCCTACTCCCACCGCTACAGCCA
CAACAGGAGTAGGAGGCGGAGTAGGAGGGGGGGGGGAGGGAGGAAACGCT
TCCGGAACGTCCACTTCGGCGAAGAAAAAGAAGAAGAAGAAGAATAATGC
TGCGGCGGCTGCTGCAGCCGCCGCTGCTTCTGTTCCAGGCGGTAGTGGTC
CAGTCTCTCTACAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGTGGTGGTGGGGGAAGAAGGGAGGGAGGCGAGGAGCTGGCACCGGCGA
TGCTTTCCTCGCCGGCTGCTGCCTCTGCAGCAACAACAACGACGACCAAT
AGCAACAGCAGCAGCAGCAGCAGTGGTAGGAGCAACAGTACTAGTGTTGT
TGCTGGTGGTGGTGGAAGTGAGGGGGGAGAGAAGGCGGTTGGGACGGTTA
AGGCCAACCTCTCAGCAGAAGGAAAGAAGAGGGGGGGATCAGAACAACAG
CAACAGCACCAGCACCAGCAGGAGTATCCTGGCCAGGGAAAGAAGGAGAG
TGGCGCTGAGAAGGAAAAGGAAGGAGGAGCGCCGAAGGGCACCAGCAGCA
ACAGCAGCAGCAGCAGCGGCAGCAACCATCGAAAGGCGACTTCCGGTATG
GCTGGAGGAGGGAAAAAAGACCGAGGCGACAAGGGTGGTGCGTCTGCCCC
TCCTCCTCCCCCTCCTCCGGTTCCGCCGGTTATGACAGCGGCTCATTTCC
CCCCCCTGCCCGGTGGGGAGGGAGGAAAAGAGGGAGGGATCGCGGTTTCC
TCCTCGGCTGCTGCTTCCACTGCGTCGTCCACCGTCACCACCAAGGCGGG
CGAAAGCAGCAGCTTTGCGGCCGCTTTGTTGGCGCGAAGCAGCAACAGTG
GCAGCAGTGGCAGCAGTGGCAGCAGTGGCAGCAGCAGCAGCAGCAACGCT
GGTCCAGCCCCCTTGCCTTCCTCTCCCTCCCTCTCACCCTCGACATCGAC
GGCAGGGAAGTCACGTCCTCATGTAAAGGGTGAGGAAAAAACAGCGGTGG

Coding sequence (CDS) from alignment at scaffold_20:27839..31238+

>mRNA_7465 ID=mRNA_7465|Name=jgi.p|Nanoce1779_2|156667|organism=Nannochloropsis oceanica|type=CDS|length=2646bp|location=Sequence derived from alignment at scaffold_20:27839..31238+ (Nannochloropsis oceanica)
ATGCCAGCAGCAGCACCAGCAGCAGCAAATCAAATGAGATTTGTAAGCAG
AATGGCAAGCACTCTGCACCAGACAAGAAGGCAACGACAACGACAGCAGA
ACCAGCGGCAACAAAACCAGCAGCAGCAGCAGCGGCAGCAGGCAAGCCAA
GTAGCGCCGCTGCTCGTCCCTCGTCCTTGTCCTTGTCCTCGTCCACATCG
CTTTCCTCCTCCTCCTCATCCACCAAACCCAGCACCGGCACGAATGCCAC
CCGCAGCACCAGCCCTCTCCCGTCTCATGTCCGCAGCTCCTCCATTACCA
CCCCCCCCCCCCCTTCCCCGTTCCTCCTCCACCACTTCCTCCTCCTCGTC
CTCCTCCTCGTCCTTCTCCGCCTTGACCCCCGCCCGGATCGCGGCAGCCC
GTCAAGCCCTTGAGCACTATCTTTCCCTCTCCTACCTGCAATCAGATGGC
GGTTTCCTCGTCTCACATATGAATCCGCAAATGTTCATCCCGCTCTCCAT
CCTCTCCTCCCTGCCATCCCTGGCCTCCCTCCCCCCCTCTCCCCCCCTCC
TTGTCGCCGCCCTCATGGACCATCCCACCCTTGCCCTGAGCGAGGACCAA
AGCAGCGTGCGGCCCAACATCCACGTCGAAAGAACGACTATCATCCTCCG
AGAGGTGAGTAGCAACACGCCTGAGGAGGAGTTGAAGCAGAAATTGTTTT
CGTGGGATGGGTGTCCAGAGGTGAGGGCTTTGAAGAAGGATGTGGAGAAC
ACGTGGTTCGTCTTGTTTGCGACAGAGAAGGACGCAAAAAAGGCGCTGGA
AAAGCTCAGGGAGATGCTGTGGGAGGGAGGGGTGGTGAAGGCCCGCCTGA
AGAGCGAAAATGTGATCAATAAGGCCTTTTTTTCGGGAGGGGGAGGAGGG
CAGGGAGGAGGGAGGGAGGGAGGGAGGTTTGCCGGCGGAGGAGGTGGGGG
GGGGAGGAGGAGGGGGAGGAGGTGGAGGAGGTGTAGGGTATATAATGAAT
GGTGGAGGAGGAGGGGGCCCAAGAGGAGGAGGAGGTGTGGGGGGAGGGAT
GATGAATGGAGGTGTACATCATCATTATCAGCAGTACCACCACCATCACC
AGCAGCAGCAACAGTCACAAGGCAGTCAGTCCTTTCCGTCCCCATCCTCC
TCCTCGTCCTCATCCTCTTCGTCTTTCCAGCCGTCACACCTCCCCCCTCA
CCACTTGGGAGGTGGAGGGAGGGAGGGAGGAGGAGGGCCCTATGTGTATA
TGAATGGAGGAGGTGGAGGAGGGATGTACGTGGTGCCGAATGGCATGACC
TCCTCCGGTTCCGCCGGTTATGAATGCCAGCAGCAGCACCAGCAGCAGCA
AATCAAATGAGATTTGTAAGCAGAATGGCAAGCACTCTGCACCAGACAAG
AAGGCAACGACAACGACAGCAGAACCAGCGGCAACAAAACCAGCAGCAGC
AGCAGCGGCAGCAGGCAAGCCAAGTAGCGCCGCTGCTCGTCCCTCGTCCT
TGTCCTTGTCCTCGTCCACATCGCTTTCCTCCTCCTCCTCATCCACCAAA
CCCAGCACCGGCACGAATGCCACCCGCAGCACCAGCCCTCTCCCGTCTCA
TGTCCGCAGCTCCTCCATTACCACCCCCCCCCCCCCTTCCCCGTTCCTCC
TCCACCACTTCCTCCTCCTCGTCCTCCTCCTCGTCCTTCTCCGCCTTGAC
CCCCGCCCGGATCGCGGCAGCCCGTCAAGCCCTTGAGCACTATCTTTCCC
TCTCCTACCTGCAATCAGATGGCGGTTTCCTCGTCTCACATATGAATCCG
CAAATGTTCATCCCGCTCTCCATCCTCTCCTCCCTGCCATCCCTGGCCTC
CCTCCCCCCCTCTCCCCCCCTCCTTGTCGCCGCCCTCATGGACCATCCCA
CCCTTGCCCTGAGCGAGGACCAAAGCAGCGTGCGGCCCAACATCCACGTC
GAAAGAACGACTATCATCCTCCGAGAGGTGAGTAGCAACACGCCTGAGGA
GGAGTTGAAGCAGAAATTGTTTTCGTGGGATGGGTGTCCAGAGGTGAGGG
CTTTGAAGAAGGATGTGGAGAACACGTGGTTCGTCTTGTTTGCGACAGAG
AAGGACGCAAAAAAGGCGCTGGAAAAGCTCAGGGAGATGCTGTGGGAGGG
AGGGGTGGTGAAGGCCCGCCTGAAGAGCGAAAATGTGATCAATAAGGCCT
TTTTTTCGGGAGGGGGAGGAGGGCAGGGAGGAGGGAGGGAGGGAGGGAGG
TTTGCCGGCGGAGGAGGTGGGGGGGGGAGGAGGAGGGGGAGGAGGTGGAG
GAGGTGTAGGGTATATAATGAATGGTGGAGGAGGAGGGGGCCCAAGAGGA
GGAGGAGGTGTGGGGGGAGGGATGATGAATGGAGGTGTACATCATCATTA
TCAGCAGTACCACCACCATCACCAGCAGCAGCAACAGTCACAAGGCAGTC
AGTCCTTTCCGTCCCCATCCTCCTCCTCGTCCTCATCCTCTTCGTCTTTC
CAGCCGTCACACCTCCCCCCTCACCACTTGGGAGGTGGAGGGAGGGAGGG
AGGAGGAGGGCCCTATGTGTATATGAATGGAGGAGGTGGAGGAGGGATGT
ACGTGGTGCCGAATGGCATGACCTCCTCCGGTTCCGCCGGTTATGA

Synonyms

Publications