jgi.p|Nanoce1779_2|653725, mRNA_7459 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|653725
Unique Name	mRNA_7459
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1026
Alignment location	scaffold_20:12382..13567 +

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Properties


Property Name	Value
TranscriptId	653811
Track	FilteredModels2
ProteinId	653725

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:12382..13567 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|653725	gene_7459	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|653725	mRNA_7459-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7459	CDS_7459	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:12382..13567+
coding sequence from alignment at scaffold_20:12382..13567+

mRNA sequence

>mRNA_7459 ID=mRNA_7459|Name=jgi.p|Nanoce1779_2|653725|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp
ATGGCTTACCAGCTTCGCTGCCTGGGTCTCTCCCTCCTCTTTGCCTCGCT
CGTCTCGGGGGCCTGGAACCCATTCGCTGACCTTTCTCAAGGCATCTCTG
CCCACGTCGACCGCAATGTCGGAGAGACGGACGGTACCCTTACCAGCAGC
ACGGGAGGGCTGGTCGTTCCGCCTGTGCGTGGCGGGGGCTTCCTGTGGTG
GACATCCACGGAAGAGAAAGGTGAACTTGCAAAGGAAGACGCCCAAAAAT
CTTGGTTCTGGGGAAAGGAGTATGCGAAGGATAAGGCGTCTGACACCAAA
GACGCAGTGACTACCAAGGCTGAGGCAGCGAAGAAAAAGTCCGCTAAGGC
GTCAGAGCAGGGTAAAGAGTCGTTGCATAATATGAAGGACAAGCTGAGCG
ACAAGTACGACACAGTGAAAGCGCAAGCCAAGTGTGTGGCAAGCAAGACG
ACGGAGGGCATGAAGGAGGGAGTGGACAGCACCAAGTCCACCTTGGCGAC
GGGCAGGCACAAAATCAAGGCGGTGGGAAACACTGTCGAGGTCTTGGGGG
ATATGAAGACGGGCTACGACAAATACCTGCATGGCAAGGCCCAAGCAAAT
CAACTGGTGCACAGTGCCGAGGAGGGGGTGGAGGAAGGGATGGAAAAAAC
CAAAGGGCTGTTGAGTTGGATCATAGAGGTGCTTGGGTGGCCTTTTCGTT
CACGTAGGGTGGTAACGACGACGACGATCCGCGACCGAGGCGTGATGAGC
AGGGAGGAGGGTGGACCCTTTGTTCTGGAGGAAGAAAATTTGGTGACGGC
TCCCAAGAGCGTGGATGATGCATTGGAAGAGTTTGAGACGTGCAAGCAAG
TTGATTCAATGACCGAGGAGGAGGCCCAGAAGACCCGCAATCTGTTTCAA
GCAGCTCGTGACATGATTAAAGGCCGGCCGCCCTTGCGTTCGGAGCAGAC
GGTGCCTGCCGAGTCTTTTAAGGAGCGCTACGCCAAGGAGAAGAGGGAGA
CGGAGGAGAGGCAGCGTCATTGGTAG

protein sequence of jgi.p|Nanoce1779_2|653725

>mRNA_7459-protein ID=mRNA_7459-protein|Name=jgi.p|Nanoce1779_2|653725|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MAYQLRCLGLSLLFASLVSGAWNPFADLSQGISAHVDRNVGETDGTLTSS
TGGLVVPPVRGGGFLWWTSTEEKGELAKEDAQKSWFWGKEYAKDKASDTK
DAVTTKAEAAKKKSAKASEQGKESLHNMKDKLSDKYDTVKAQAKCVASKT
TEGMKEGVDSTKSTLATGRHKIKAVGNTVEVLGDMKTGYDKYLHGKAQAN
QLVHSAEEGVEEGMEKTKGLLSWIIEVLGWPFRSRRVVTTTTIRDRGVMS
REEGGPFVLEEENLVTAPKSVDDALEEFETCKQVDSMTEEEAQKTRNLFQ
AARDMIKGRPPLRSEQTVPAESFKERYAKEKRETEERQRHW*

mRNA from alignment at scaffold_20:12382..13567+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7459 ID=mRNA_7459|Name=jgi.p|Nanoce1779_2|653725|organism=Nannochloropsis oceanica|type=mRNA|length=1186bp|location=Sequence derived from alignment at scaffold_20:12382..13567+ (Nannochloropsis oceanica)
ATGGCTTACCAGCTTCGCTGCCTGGGTCTCTCCCTCCTCTTTGCCTCGCT
CGTCTCGGGGGCCTGGAACCCATTCGCTGACCTTTCTCAAGGCATCTCTG
CCCACGTCGACCGCAATGTCGGAGAGACGGACGGTACCCTTACCAGCAGC
ACGGGAGGGCTGGTCGTTCCGCCTGTGCGTGGCGGGGGCTTCCTGTGGTG
GACATCCACGGAAGAGAAAGGTGAACTTGCAAAGGAAGACGCCCAAAAAT
CTTGGTTCTGGGGAAAGGAGTATGCGAAGGATAAGGCGTCTGACACCAAA
GACGCAGTGACTACCAAGGCTGAGGCAGCGAAGAAAAAGTCCGCTAAGGC
GTCAGAGCAGGGTAAAGAGTCGTTGCATAATATGAAGGACAAGCTGAGCG
ACAAGTACGACACAGTGAAAGCGCAAGCCAAGTGTGTGGCAAGCAAGACG
ACGGAGGGCATGAAGGAGGGAGTGGACAGCACCAAGTCCACCTTGGCGAC
GGGCAGGCACAAAATCAAGGCGGTGGGAAACACTGTCGAGGTCTTGGGGG
ATATGAAGACGGGCTACGACAAATACCTGCATGGCAAGGCCCAAGCAAAT
CAACTGGTGCACAGTGCCGAGGAGGGGGTGGAGGAAGGGATGGAAAAAAC
CAAAGGGCTGTTGAGTTGGATCATAGAGGTGCTTGGGTGGCCTTTTCGTT
CACGTAGGGTGGTAACGACGACGACGATCCGCGACCGAGGCGTGATGAGC
AGGGAGGAGGGTGGACCCTTTGTTCTGGAGGAAGAAAATTTGGTGACGGC
TCCCAAGAGCGTGGATGATGCATTGGAAGAGTTTGAGACGTGCAAGGTGC
ATAGGGAGGGAGGGAAGGAGGGAGGGAAGAAGGGAGGGAGGGAGAGATCT
TTTGACTCAAAAATCCCTCTCTTAATCAATAAAATGAATAAGATTGATTG
CCACACGCCACTTACTCTCTCCTTCCATTAATCTTCCTTCTTCCCCACCC
ACACAGCAAGTTGATTCAATGACCGAGGAGGAGGCCCAGAAGACCCGCAA
TCTGTTTCAAGCAGCTCGTGACATGATTAAAGGCCGGCCGCCCTTGCGTT
CGGAGCAGACGGTGCCTGCCGAGTCTTTTAAGGAGCGCTACGCCAAGGAG
AAGAGGGAGACGGAGGAGAGGCAGCGTCATTGGTAG

Coding sequence (CDS) from alignment at scaffold_20:12382..13567+

>mRNA_7459 ID=mRNA_7459|Name=jgi.p|Nanoce1779_2|653725|organism=Nannochloropsis oceanica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_20:12382..13567+ (Nannochloropsis oceanica)
ATGGCTTACCAGCTTCGCTGCCTGGGTCTCTCCCTCCTCTTTGCCTCGCT
CGTCTCGGGGGCCTGGAACCCATTCGCTGACCTTTCTCAAGGCATCTCTG
CCCACGTCGACCGCAATGTCGGAGAGACGGACGGTACCCTTACCAGCAGC
ACGGGAGGGCTGGTCGTTCCGCCTGTGCGTGGCGGGGGCTTCCTGTGGTG
GACATCCACGGAAGAGAAAGGTGAACTTGCAAAGGAAGACGCCCAAAAAT
CTTGGTTCTGGGGAAAGGAGTATGCGAAGGATAAGGCGTCTGACACCAAA
GACGCAGTGACTACCAAGGCTGAGGCAGCGAAGAAAAAGTCCGCTAAGGC
GTCAGAGCAGGGTAAAGAGTCGTTGCATAATATGAAGGACAAGCTGAGCG
ACAAGTACGACACAGTGAAAGCGCAAGCCAAGTGTGTGGCAAGCAAGACG
ACGGAGGGCATGAAGGAGGGAGTGGACAGCACCAAGTCCACCTTGGCGAC
GGGCAGGCACAAAATCAAGGCGGTGGGAAACACTGTCGAGGTCTTGGGGG
ATATGAAGACGGGCTACGACAAATACCTGCATGGCAAGGCCCAAGCAAAT
CAACTGGTGCACAGTGCCGAGGAGGGGGTGGAGGAAGGGATGGAAAAAAC
CAAAGGGCTGTTGAGTTGGATCATAGAGGTGCTTGGGTGGCCTTTTCGTT
CACGTAGGGTGGTAACGACGACGACGATCCGCGACCGAGGCGTGATGAGC
AGGGAGGAGGGTGGACCCTTTGTTCTGGAGGAAGAAAATTTGGTGACGGC
TCCCAAGAGCGTGGATGATGCATTGGAAGAGTTTGAGACGTGCAAGCAAG
TTGATTCAATGACCGAGGAGGAGGCCCAGAAGACCCGCAATCTGTTTCAA
GCAGCTCGTGACATGATTAAAGGCCGGCCGCCCTTGCGTTCGGAGCAGAC
GGTGCCTGCCGAGTCTTTTAAGGAGCGCTACGCCAAGGAGAAGAGGGAGA
CGGAGGAGAGGCAGCGTCATTGGTAGATGGCTTACCAGCTTCGCTGCCTG
GGTCTCTCCCTCCTCTTTGCCTCGCTCGTCTCGGGGGCCTGGAACCCATT
CGCTGACCTTTCTCAAGGCATCTCTGCCCACGTCGACCGCAATGTCGGAG
AGACGGACGGTACCCTTACCAGCAGCACGGGAGGGCTGGTCGTTCCGCCT
GTGCGTGGCGGGGGCTTCCTGTGGTGGACATCCACGGAAGAGAAAGGTGA
ACTTGCAAAGGAAGACGCCCAAAAATCTTGGTTCTGGGGAAAGGAGTATG
CGAAGGATAAGGCGTCTGACACCAAAGACGCAGTGACTACCAAGGCTGAG
GCAGCGAAGAAAAAGTCCGCTAAGGCGTCAGAGCAGGGTAAAGAGTCGTT
GCATAATATGAAGGACAAGCTGAGCGACAAGTACGACACAGTGAAAGCGC
AAGCCAAGTGTGTGGCAAGCAAGACGACGGAGGGCATGAAGGAGGGAGTG
GACAGCACCAAGTCCACCTTGGCGACGGGCAGGCACAAAATCAAGGCGGT
GGGAAACACTGTCGAGGTCTTGGGGGATATGAAGACGGGCTACGACAAAT
ACCTGCATGGCAAGGCCCAAGCAAATCAACTGGTGCACAGTGCCGAGGAG
GGGGTGGAGGAAGGGATGGAAAAAACCAAAGGGCTGTTGAGTTGGATCAT
AGAGGTGCTTGGGTGGCCTTTTCGTTCACGTAGGGTGGTAACGACGACGA
CGATCCGCGACCGAGGCGTGATGAGCAGGGAGGAGGGTGGACCCTTTGTT
CTGGAGGAAGAAAATTTGGTGACGGCTCCCAAGAGCGTGGATGATGCATT
GGAAGAGTTTGAGACGTGCAAGCAAGTTGATTCAATGACCGAGGAGGAGG
CCCAGAAGACCCGCAATCTGTTTCAAGCAGCTCGTGACATGATTAAAGGC
CGGCCGCCCTTGCGTTCGGAGCAGACGGTGCCTGCCGAGTCTTTTAAGGA
GCGCTACGCCAAGGAGAAGAGGGAGACGGAGGAGAGGCAGCGTCATTGGT
AG

Synonyms

Publications