jgi.p|Nanoce1779_2|598827, mRNA_7456 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598827
Unique NamemRNA_7456
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length531
Alignment locationscaffold_20:7103..8140 -

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Properties
Property NameValue
TranscriptId598913
TrackFilteredModels2
ProteinId598827
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:7103..8140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598827gene_7456Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598827mRNA_7456-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7456CDS_7456Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7456 ID=mRNA_7456|Name=jgi.p|Nanoce1779_2|598827|organism=Nannochloropsis oceanica|type=mRNA|length=531bp
ACAGATACACACGCAACCATGCCTCACTCGTTTGGGTACCGGGCGCGGAC
GCGCTCCATGTTCCGCCGGGCCTTTGGTGAGCACGGTGTGAACCCCTTGT
CTATCTACATGCGCAACTACAAGGTCGGCGATGTCGTGGACATCAAGGCC
AACTCATCCATCCAGAAGGGTATGCCCTTCAAGGGCTACCACGGCCGCAC
GGGTGTGGTGTACAACGTGACGAAGCGCGCCCTCGGCGTGGAGGTGAATA
AGCTGGTGAATGGCAAGATCATCAAGAAGAAGATTAATATCCGCGTAGAG
CACCTTCGGCCCACGACTTCTCGTAAGGAGTGGATCGAGCGCGTCCGTCA
GAATGAGCTGCAGAAGAAGGCACTCAAGGCAGGGGAGAAGGAATTCAGGC
AGTTGAAACGCCTACCGAAGGCGCCCAAGGAGGCCTTTATGCTGAAATAC
GAGGAGAAGGAGGTGCAGACGATTCAGGCGATTCCCTTCGTGGACTTGGT
CTAAGCTGAGGGAGGGTGGGAGGGGGGAAAG
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protein sequence of jgi.p|Nanoce1779_2|598827

>mRNA_7456-protein ID=mRNA_7456-protein|Name=jgi.p|Nanoce1779_2|598827|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MPHSFGYRARTRSMFRRAFGEHGVNPLSIYMRNYKVGDVVDIKANSSIQK
GMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINIRVEHLRPTT
SRKEWIERVRQNELQKKALKAGEKEFRQLKRLPKAPKEAFMLKYEEKEVQ
TIQAIPFVDLV*
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mRNA from alignment at scaffold_20:7103..8140-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7456 ID=mRNA_7456|Name=jgi.p|Nanoce1779_2|598827|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp|location=Sequence derived from alignment at scaffold_20:7103..8140- (Nannochloropsis oceanica)
ACAGATACACACGCAACCATGCCTCACTCGTTTGGGTACCGGGCGCGGAC
GCGCTCCATGTTCCGCCGGGCCTTTGGTGAGCACGGTGTGAACCCCTTGT
CTATCTACATGCGCAACTACAAGGTACGTTTGGGTTTCTTCGCAGTGTTA
GGGCGTAGATTGTGGCTGGGAGAGTGAGTATGCGCGGAGAGAGACAACGC
TGGGCAGCGGGGAAAGGCTGGTTTGAAAGGGCTGAGGTGCTGCGTCATAT
GATGATGGAGGGAGAAGCTCGGCGTGGTCTTGGCTTTGGTATCTTGTTCG
GCAGTATTGATGCCACAGAGTTCTTGCAAACGTGGAAACTGAGGGATTGA
TAGAGGGCACAAATCTTTATTGAGCCTTCATAAGCCTTCGTGCCCGGCGT
GGTGCCTGACAGGAGCCTTGTGCTGGCGCTGATGCTTGATGCGGAGCGTG
AAGACAACGTTGGGAGCGGGCGGAAGGGGAGGACGGATGACTTGCGAAAT
CAGTGGAGTATACTTGATTGAGTCTGGAAAATAACGGCTGGATGGGTCTT
TCTTGAAGCAATATTCTCATTCCTCAATTTCTCCCTCTTTTTCCTTTCCT
CCCTCCTTCCTTCTCCTCATTATCCCCTAGGTCGGCGATGTCGTGGACAT
CAAGGCCAACTCATCCATCCAGAAGGGTATGCCCTTCAAGGGCTACCACG
GCCGCACGGGTGTGGTGTACAACGTGACGAAGCGCGCCCTCGGCGTGGAG
GTGAATAAGCTGGTGAATGGCAAGATCATCAAGAAGAAGATTAATATCCG
CGTAGAGCACCTTCGGCCCACGACTTCTCGTAAGGAGTGGATCGAGCGCG
TCCGTCAGAATGAGCTGCAGAAGAAGGCACTCAAGGCAGGGGAGAAGGAA
TTCAGGCAGTTGAAACGCCTACCGAAGGCGCCCAAGGAGGCCTTTATGCT
GAAATACGAGGAGAAGGAGGTGCAGACGATTCAGGCGATTCCCTTCGTGG
ACTTGGTCTAAGCTGAGGGAGGGTGGGAGGGGGGAAAG
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Coding sequence (CDS) from alignment at scaffold_20:7103..8140-

>mRNA_7456 ID=mRNA_7456|Name=jgi.p|Nanoce1779_2|598827|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_20:7103..8140- (Nannochloropsis oceanica)
GTCGGCGATGTCGTGGACATCAAGGCCAACTCATCCATCCAGAAGGGTAT
GCCCTTCAAGGGCTACCACGGCCGCACGGGTGTGGTGTACAACGTGACGA
AGCGCGCCCTCGGCGTGGAGGTGAATAAGCTGGTGAATGGCAAGATCATC
AAGAAGAAGATTAATATCCGCGTAGAGCACCTTCGGCCCACGACTTCTCG
TAAGGAGTGGATCGAGCGCGTCCGTCAGAATGAGCTGCAGAAGAAGGCAC
TCAAGGCAGGGGAGAAGGAATTCAGGCAGTTGAAACGCCTACCGAAGGCG
CCCAAGGAGGCCTTTATGCTGAAATACGAGGAGAAGGAGGTGCAGACGAT
TCAGGCGATTCCCTTCGTGGACTTGGTCTAAATGCCTCACTCGTTTGGGT
ACCGGGCGCGGACGCGCTCCATGTTCCGCCGGGCCTTTGGTGAGCACGGT
GTGAACCCCTTGTCTATCTACATGCGCAACTACAAGGTCGGCGATGTCGT
GGACATCAAGGCCAACTCATCCATCCAGAAGGGTATGCCCTTCAAGGGCT
ACCACGGCCGCACGGGTGTGGTGTACAACGTGACGAAGCGCGCCCTCGGC
GTGGAGGTGAATAAGCTGGTGAATGGCAAGATCATCAAGAAGAAGATTAA
TATCCGCGTAGAGCACCTTCGGCCCACGACTTCTCGTAAGGAGTGGATCG
AGCGCGTCCGTCAGAATGAGCTGCAGAAGAAGGCACTCAAGGCAGGGGAG
AAGGAATTCAGGCAGTTGAAACGCCTACCGAAGGCGCCCAAGGAGGCCTT
TATGCTGAAATACGAGGAGAAGGAGGTGCAGACGATTCAGGCGATTCCCT
TCGTGGACTTGGTCTAAATGCCTCACTCGTTTGGGTACCGGGCGCGGACG
CGCTCCATGTTCCGCCGGGCCTTTGGTGAGCACGGTGTGAACCCCTTGTC
TATCTACATGCGCAACTACAAG
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Synonyms
Publications