jgi.p|Nanoce1779_2|558555, mRNA_7455 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|558555
Unique Name	mRNA_7455
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1976
Alignment location	scaffold_20:4822..6844 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	558641
Track	FilteredModels2
ProteinId	558555

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:4822..6844 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|558555	gene_7455	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|558555	mRNA_7455-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7455	CDS_7455	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:4822..6844+
coding sequence from alignment at scaffold_20:4822..6844+

mRNA sequence

>mRNA_7455 ID=mRNA_7455|Name=jgi.p|Nanoce1779_2|558555|organism=Nannochloropsis oceanica|type=mRNA|length=1976bp
ATGCCGCACATTACCCGGGCTTTGTTGCGAAAGCGGGCCGCGCACAACGA
AGGCCTTCTCACCACTTTAGAAGAACTGACCTTGCACCAAGAGGAGCTGG
AAGGGATCAACGATGTCTTGGGCCGCACGTGTCGAGAGCTCAAGATTTTG
TACTTACAGAACAATTTGTTGCCTTGCCTCGAGCAGTTGCATCATTTGAA
GCGCCTGGAGTACTTGAATGTGGCTCTAAACAACATTTGCATTGTAGAAG
GGTTGGGCTCGTGTGAGTTTTTGCGCAAGTTGGATTTGACGATGAATTTC
GTTGACTTCGATGCATTGGAAGCTAGTGTGAATCATTTGGCTAGTTTGCA
GCATTTACGAGATTTGTATTTTTTGGGGAACCCCGCGCAGACCAAGCCCT
GGTTCGAGGGTGAGGATGAGAAAGTGAGGGGAGAAGGGGAGGAGGAGAAG
AAGCAGGCATTCTTTCACTATGTCGTGCATCGAATTCCGCAGTTACAGTT
TTTGGACGGACAGGAAATTACACGCAGTGTACGTTTGGTGGCTGCAAGAC
ACTTTCCTAAGTTAGAGGCGCGGTTGCGGGTGTTGGCGGTCAGGGCACGA
CGAGAGAAGGAGGAAAAAGCAGCAGCCAAACGGAAGGAGCAAGAAAGTCA
ACCCTCCATTACCACCGCTGCTACTGCAATAAATGAAGGTGAAGTCACCA
ACCATGACCCTGAGACACGGCGAGAGATTTATTTAGAGTTAGCCGCACAG
AAGCAAGCGAAGAACGAGCGACAGAAGGCCCTTGCGCCCCGAGAGCGGGA
TGCGACACAAGAGCACGCGCAGAGGGCGATACCAGGAAAGGAAAAGGAGA
ACCACAAGGTTCGACAGAAGAATGAGGGGAAATGGACCTACAACCTCCAA
GACGAAGACGACGAAAGCAGCAACAGCAACGGCAACGACTCCACTAATTC
CCACCCGGGCAGCATCACTCTTAACCTCGTCCTCCCACGGCACCTAGACT
CTTCTCTTATCGACGTGGATGTCCATCCAATGCATATCAGCGTTATAGTT
AAAGGGAAGCTGCTCCGCCTCCTCCTTCCCAAGGAAGTGCGAGTCGAGGA
GAGCAAAGCCAAGAGGAGCAAGACTACGGGAGACCTCATGATTATCATGC
CCAAGTTAGAAGGAGTGATAAAACGACGAGGGAGGCACAAGGCTGCTACT
TCCTGCTTGTTCTCGGCGCCTATACATTTGTTGTCGCCGTCGTCCTCCGC
AGGCAAAGGCAGCAGCGGCAACGGCAAGGGCAACTGCAGCCGCAGCAACA
TCAGTGGCAACAGCAGCGGCTGCAGAAGGATAAGGGGCATGCCGCGACAT
ACGCTGGCTGAAGAGATGTTGGCAGCCCGGGAAGAAGTCGCCTACTGCGT
GCGATATTCTTCTTCCTCGGACTCTCTCTCCTCGCCACGATTGCAGCCTC
TCAGGGAAGCCGTAGATGTCCGGAGCATAGTCACAAGGAAGAAAGGAAGA
TGAGAGCGATGGGGGAGAAGGAGGAGAGCGAGATAAAGTGGACTCCCGGC
TTTTATTCAAGGAGCTGGCTTCAGTACGTCTGAAGAAGGACGAAGAGGAG
GAGGAAGGAAAAGAAAAGGAAAAAGAGGGTTCGATGGCCTCCAGAAAGAG
TAGCGCAGTCCAGGACAAAGAGCAAGGGGACGCACAAGATGAGGGATGGA
CGTATATACCGTCCCTCCACTCATTTAGTACACCATCGAATCAGAATCTC
ACGAGGGTCGAAGCCCAAAATGTGGCACCAAGAAGACACCGCATGAGTAA
GGCAGAAGTGAAAACAGGCTGTAAATTTCAATATCCAGTGCTCCCGTTTT
CCCTTCGAATCAACAAATTTCGCCGTGGTAGATGAGACAGTACTCACAAT
TATGGAGCCCCAAAATAATAAAACCTGAACTCCTAAATCTGCCACACCTT
AACAAGTGTTAGGGTAAAGACAGCGT

protein sequence of jgi.p|Nanoce1779_2|558555

>mRNA_7455-protein ID=mRNA_7455-protein|Name=jgi.p|Nanoce1779_2|558555|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp
MPHITRALLRKRAAHNEGLLTTLEELTLHQEELEGINDVLGRTCRELKIL
YLQNNLLPCLEQLHHLKRLEYLNVALNNICIVEGLGSCEFLRKLDLTMNF
VDFDALEASVNHLASLQHLRDLYFLGNPAQTKPWFEGEDEKVRGEGEEEK
KQAFFHYVVHRIPQLQFLDGQEITRSVRLVAARHFPKLEARLRVLAVRAR
REKEEKAAAKRKEQESQPSITTAATAINEGEVTNHDPETRREIYLELAAQ
KQAKNERQKALAPRERDATQEHAQRAIPGKEKENHKVRQKNEGKWTYNLQ
DEDDESSNSNGNDSTNSHPGSITLNLVLPRHLDSSLIDVDVHPMHISVIV
KGKLLRLLLPKEVRVEESKAKRSKTTGDLMIIMPKLEGVIKRRGRHKAAT
SCLFSAPIHLLSPSSSAGKGSSGNGKGNCSRSNISGNSSGCRRIRGMPRH
TLAEEMLAAREEVAYCVRYSSSSDSLSSPRLQPLREAVDVRSIVTRKKGR
*

mRNA from alignment at scaffold_20:4822..6844+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7455 ID=mRNA_7455|Name=jgi.p|Nanoce1779_2|558555|organism=Nannochloropsis oceanica|type=mRNA|length=2023bp|location=Sequence derived from alignment at scaffold_20:4822..6844+ (Nannochloropsis oceanica)
ATGCCGCACATTACCCGGGCTTTGTTGCGAAAGCGGGCCGCGCACAACGA
AGGCCTTCTCACCACTTTAGAAGAACTGACCTTGCACCAAGAGGAGCTGG
AAGGGATCAACGATGTCTTGGGCCGCACGTGTCGAGAGCTCAAGATTTTG
TACTTACAGAACAATTTGTTGCCTTGCCTCGAGCAGTTGCATCATTTGAA
GCGCCTGGAGTACTTGAATGTGGCTCTAAACAACATTTGCATTGTAGAAG
GGTTGGGCTCGTGTGAGTTTTTGCGCAAGTTGGATTTGACGATGAATTTC
GTTGACTTCGATGCATTGGAAGCTAGTGTGAATCATTTGGCTAGTTTGCA
GCATTTACGAGATTTGTATTTTTTGGGGAACCCCGCGCAGACCAAGCCCT
GGTTCGAGGGTGAGGATGAGAAAGTGAGGGGAGAAGGGGAGGAGGAGAAG
AAGCAGGCATTCTTTCACTATGTCGTGCATCGAATTCCGCAGTTACAGTT
TTTGGACGGACAGGAAATTACACGCAGTGTACGTTTGGTGGCTGCAAGAC
ACTTTCCTAAGTTAGAGGCGCGGTTGCGGGTGTTGGCGGTCAGGGCACGA
CGAGAGAAGGAGGAAAAAGCAGCAGCCAAACGGAAGGAGCAAGAAAGTCA
ACCCTCCATTACCACCGCTGCTACTGCAATAAATGAAGGTGAAGTCACCA
ACCATGACCCTGAGACACGGCGAGAGATTTATTTAGAGTTAGCCGCACAG
AAGCAAGCGAAGAACGAGCGACAGAAGGCCCTTGCGCCCCGAGAGCGGGA
TGCGACACAAGAGCACGCGCAGAGGGTGACAACGATACATGCGGAGGAAA
AGCAGGGAGGGAGGCAAGAAAGGCGATACCAGGAAAGGAAAAGGAGAACC
ACAAGGTTCGACAGAAGAATGAGGGGAAATGGACCTACAACCTCCAAGAC
GAAGACGACGAAAGCAGCAACAGCAACGGCAACGACTCCACTAATTCCCA
CCCGGGCAGCATCACTCTTAACCTCGTCCTCCCACGGCACCTAGACTCTT
CTCTTATCGACGTGGATGTCCATCCAATGCATATCAGCGTTATAGTTAAA
GGGAAGCTGCTCCGCCTCCTCCTTCCCAAGGAAGTGCGAGTCGAGGAGAG
CAAAGCCAAGAGGAGCAAGACTACGGGAGACCTCATGATTATCATGCCCA
AGTTAGAAGGAGTGATAAAACGACGAGGGAGGCACAAGGCTGCTACTTCC
TGCTTGTTCTCGGCGCCTATACATTTGTTGTCGCCGTCGTCCTCCGCAGG
CAAAGGCAGCAGCGGCAACGGCAAGGGCAACTGCAGCCGCAGCAACATCA
GTGGCAACAGCAGCGGCTGCAGAAGGATAAGGGGCATGCCGCGACATACG
CTGGCTGAAGAGATGTTGGCAGCCCGGGAAGAAGTCGCCTACTGCGTGCG
ATATTCTTCTTCCTCGGACTCTCTCTCCTCGCCACGATTGCAGCCTCTCA
GGGAAGCCGTAGATGTCCGGAGCATAGTCACAAGGAAGAAAGGAAGATGA
GAGCGATGGGGGAGAAGGAGGAGAGCGAGATAAAGTGGACTCCCGGCTTT
TATTCAAGGAGCTGGCTTCAGTACGTCTGAAGAAGGACGAAGAGGAGGAG
GAAGGAAAAGAAAAGGAAAAAGAGGGTTCGATGGCCTCCAGAAAGAGTAG
CGCAGTCCAGGACAAAGAGCAAGGGGACGCACAAGATGAGGGATGGACGT
ATATACCGTCCCTCCACTCATTTAGTACACCATCGAATCAGAATCTCACG
AGGGTCGAAGCCCAAAATGTGGCACCAAGAAGACACCGCATGAGTAAGGC
AGAAGTGAAAACAGGCTGTAAATTTCAATATCCAGTGCTCCCGTTTTCCC
TTCGAATCAACAAATTTCGCCGTGGTAGATGAGACAGTACTCACAATTAT
GGAGCCCCAAAATAATAAAACCTGAACTCCTAAATCTGCCACACCTTAAC
AAGTGTTAGGGTAAAGACAGCGT

Coding sequence (CDS) from alignment at scaffold_20:4822..6844+

>mRNA_7455 ID=mRNA_7455|Name=jgi.p|Nanoce1779_2|558555|organism=Nannochloropsis oceanica|type=CDS|length=3006bp|location=Sequence derived from alignment at scaffold_20:4822..6844+ (Nannochloropsis oceanica)
ATGCCGCACATTACCCGGGCTTTGTTGCGAAAGCGGGCCGCGCACAACGA
AGGCCTTCTCACCACTTTAGAAGAACTGACCTTGCACCAAGAGGAGCTGG
AAGGGATCAACGATGTCTTGGGCCGCACGTGTCGAGAGCTCAAGATTTTG
TACTTACAGAACAATTTGTTGCCTTGCCTCGAGCAGTTGCATCATTTGAA
GCGCCTGGAGTACTTGAATGTGGCTCTAAACAACATTTGCATTGTAGAAG
GGTTGGGCTCGTGTGAGTTTTTGCGCAAGTTGGATTTGACGATGAATTTC
GTTGACTTCGATGCATTGGAAGCTAGTGTGAATCATTTGGCTAGTTTGCA
GCATTTACGAGATTTGTATTTTTTGGGGAACCCCGCGCAGACCAAGCCCT
GGTTCGAGGGTGAGGATGAGAAAGTGAGGGGAGAAGGGGAGGAGGAGAAG
AAGCAGGCATTCTTTCACTATGTCGTGCATCGAATTCCGCAGTTACAGTT
TTTGGACGGACAGGAAATTACACGCAGTGTACGTTTGGTGGCTGCAAGAC
ACTTTCCTAAGTTAGAGGCGCGGTTGCGGGTGTTGGCGGTCAGGGCACGA
CGAGAGAAGGAGGAAAAAGCAGCAGCCAAACGGAAGGAGCAAGAAAGTCA
ACCCTCCATTACCACCGCTGCTACTGCAATAAATGAAGGTGAAGTCACCA
ACCATGACCCTGAGACACGGCGAGAGATTTATTTAGAGTTAGCCGCACAG
AAGCAAGCGAAGAACGAGCGACAGAAGGCCCTTGCGCCCCGAGAGCGGGA
TGCGACACAAGAGCACGCGCAGAGGGCGATACCAGGAAAGGAAAAGGAGA
ACCACAAGGTTCGACAGAAGAATGAGGGGAAATGGACCTACAACCTCCAA
GACGAAGACGACGAAAGCAGCAACAGCAACGGCAACGACTCCACTAATTC
CCACCCGGGCAGCATCACTCTTAACCTCGTCCTCCCACGGCACCTAGACT
CTTCTCTTATCGACGTGGATGTCCATCCAATGCATATCAGCGTTATAGTT
AAAGGGAAGCTGCTCCGCCTCCTCCTTCCCAAGGAAGTGCGAGTCGAGGA
GAGCAAAGCCAAGAGGAGCAAGACTACGGGAGACCTCATGATTATCATGC
CCAAGTTAGAAGGAGTGATAAAACGACGAGGGAGGCACAAGGCTGCTACT
TCCTGCTTGTTCTCGGCGCCTATACATTTGTTGTCGCCGTCGTCCTCCGC
AGGCAAAGGCAGCAGCGGCAACGGCAAGGGCAACTGCAGCCGCAGCAACA
TCAGTGGCAACAGCAGCGGCTGCAGAAGGATAAGGGGCATGCCGCGACAT
ACGCTGGCTGAAGAGATGTTGGCAGCCCGGGAAGAAGTCGCCTACTGCGT
GCGATATTCTTCTTCCTCGGACTCTCTCTCCTCGCCACGATTGCAGCCTC
TCAGGGAAGCCGTAGATGTCCGGAGCATAGTCACAAGGAAGAAAGGAAGA
TGAATGCCGCACATTACCCGGGCTTTGTTGCGAAAGCGGGCCGCGCACAA
CGAAGGCCTTCTCACCACTTTAGAAGAACTGACCTTGCACCAAGAGGAGC
TGGAAGGGATCAACGATGTCTTGGGCCGCACGTGTCGAGAGCTCAAGATT
TTGTACTTACAGAACAATTTGTTGCCTTGCCTCGAGCAGTTGCATCATTT
GAAGCGCCTGGAGTACTTGAATGTGGCTCTAAACAACATTTGCATTGTAG
AAGGGTTGGGCTCGTGTGAGTTTTTGCGCAAGTTGGATTTGACGATGAAT
TTCGTTGACTTCGATGCATTGGAAGCTAGTGTGAATCATTTGGCTAGTTT
GCAGCATTTACGAGATTTGTATTTTTTGGGGAACCCCGCGCAGACCAAGC
CCTGGTTCGAGGGTGAGGATGAGAAAGTGAGGGGAGAAGGGGAGGAGGAG
AAGAAGCAGGCATTCTTTCACTATGTCGTGCATCGAATTCCGCAGTTACA
GTTTTTGGACGGACAGGAAATTACACGCAGTGTACGTTTGGTGGCTGCAA
GACACTTTCCTAAGTTAGAGGCGCGGTTGCGGGTGTTGGCGGTCAGGGCA
CGACGAGAGAAGGAGGAAAAAGCAGCAGCCAAACGGAAGGAGCAAGAAAG
TCAACCCTCCATTACCACCGCTGCTACTGCAATAAATGAAGGTGAAGTCA
CCAACCATGACCCTGAGACACGGCGAGAGATTTATTTAGAGTTAGCCGCA
CAGAAGCAAGCGAAGAACGAGCGACAGAAGGCCCTTGCGCCCCGAGAGCG
GGATGCGACACAAGAGCACGCGCAGAGGGCGATACCAGGAAAGGAAAAGG
AGAACCACAAGGTTCGACAGAAGAATGAGGGGAAATGGACCTACAACCTC
CAAGACGAAGACGACGAAAGCAGCAACAGCAACGGCAACGACTCCACTAA
TTCCCACCCGGGCAGCATCACTCTTAACCTCGTCCTCCCACGGCACCTAG
ACTCTTCTCTTATCGACGTGGATGTCCATCCAATGCATATCAGCGTTATA
GTTAAAGGGAAGCTGCTCCGCCTCCTCCTTCCCAAGGAAGTGCGAGTCGA
GGAGAGCAAAGCCAAGAGGAGCAAGACTACGGGAGACCTCATGATTATCA
TGCCCAAGTTAGAAGGAGTGATAAAACGACGAGGGAGGCACAAGGCTGCT
ACTTCCTGCTTGTTCTCGGCGCCTATACATTTGTTGTCGCCGTCGTCCTC
CGCAGGCAAAGGCAGCAGCGGCAACGGCAAGGGCAACTGCAGCCGCAGCA
ACATCAGTGGCAACAGCAGCGGCTGCAGAAGGATAAGGGGCATGCCGCGA
CATACGCTGGCTGAAGAGATGTTGGCAGCCCGGGAAGAAGTCGCCTACTG
CGTGCGATATTCTTCTTCCTCGGACTCTCTCTCCTCGCCACGATTGCAGC
CTCTCAGGGAAGCCGTAGATGTCCGGAGCATAGTCACAAGGAAGAAAGGA
AGATGA

Synonyms

Publications