jgi.p|Nanoce1779_2|598823, mRNA_7454 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598823
Unique NamemRNA_7454
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length545
Alignment locationscaffold_20:4047..4591 -

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Properties
Property NameValue
TranscriptId598909
TrackFilteredModels2
ProteinId598823
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:4047..4591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598823gene_7454Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598823mRNA_7454-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7454CDS_7454Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7454 ID=mRNA_7454|Name=jgi.p|Nanoce1779_2|598823|organism=Nannochloropsis oceanica|type=mRNA|length=545bp
ACAGGATAACGACAGTGCATTGATTTTTGATTTTGATTTGATGTTTTTCA
CTTGCTATTCAACAATGACTTTGGGCTTGAGCGTTTTGCTCGGTCTGAGC
GTCCCCACCACGACGCTCGCAGCTCACCTGCGCCGCAACGACTGGAACGC
TTCTTCAGTCCTCAACCTGGCCAACGACAACACCATCGAGGACGCCGGTC
TTCATACAAGCATCAACAATGCCATCCATGATAAGGGACCCCTTGCCAGT
CAGGACAAGACTGGTACGCTGGAGTGGGCAGGGCAGGCACAGGCTACCCC
CAATGACACTGTCGTCTCTGTGTCGAACCCGATGGGAGACCAGGGCGGGG
GGCTTACGGATCAGATCCCTGGCATGATGCCATTTGGTACTGGCATTGTG
AGTGTCCCGGTTGACAAGGGCGAGGCACCTACTGCTGACGAAATGCCGTA
ATTTGCTTAGAGAGAGAAGGGAGAGAGATCGATCGTGTGGAGGAAGATGA
GGGATGTGCTTGTGTTCATGGTGATCGTGCGCGAAGCTTGCTTTT
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protein sequence of jgi.p|Nanoce1779_2|598823

>mRNA_7454-protein ID=mRNA_7454-protein|Name=jgi.p|Nanoce1779_2|598823|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MFFTCYSTMTLGLSVLLGLSVPTTTLAAHLRRNDWNASSVLNLANDNTIE
DAGLHTSINNAIHDKGPLASQDKTGTLEWAGQAQATPNDTVVSVSNPMGD
QGGGLTDQIPGMMPFGTGIVSVPVDKGEAPTADEMP*
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mRNA from alignment at scaffold_20:4047..4591-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7454 ID=mRNA_7454|Name=jgi.p|Nanoce1779_2|598823|organism=Nannochloropsis oceanica|type=mRNA|length=545bp|location=Sequence derived from alignment at scaffold_20:4047..4591- (Nannochloropsis oceanica)
ACAGGATAACGACAGTGCATTGATTTTTGATTTTGATTTGATGTTTTTCA
CTTGCTATTCAACAATGACTTTGGGCTTGAGCGTTTTGCTCGGTCTGAGC
GTCCCCACCACGACGCTCGCAGCTCACCTGCGCCGCAACGACTGGAACGC
TTCTTCAGTCCTCAACCTGGCCAACGACAACACCATCGAGGACGCCGGTC
TTCATACAAGCATCAACAATGCCATCCATGATAAGGGACCCCTTGCCAGT
CAGGACAAGACTGGTACGCTGGAGTGGGCAGGGCAGGCACAGGCTACCCC
CAATGACACTGTCGTCTCTGTGTCGAACCCGATGGGAGACCAGGGCGGGG
GGCTTACGGATCAGATCCCTGGCATGATGCCATTTGGTACTGGCATTGTG
AGTGTCCCGGTTGACAAGGGCGAGGCACCTACTGCTGACGAAATGCCGTA
ATTTGCTTAGAGAGAGAAGGGAGAGAGATCGATCGTGTGGAGGAAGATGA
GGGATGTGCTTGTGTTCATGGTGATCGTGCGCGAAGCTTGCTTTT
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Coding sequence (CDS) from alignment at scaffold_20:4047..4591-

>mRNA_7454 ID=mRNA_7454|Name=jgi.p|Nanoce1779_2|598823|organism=Nannochloropsis oceanica|type=CDS|length=411bp|location=Sequence derived from alignment at scaffold_20:4047..4591- (Nannochloropsis oceanica)
ATGTTTTTCACTTGCTATTCAACAATGACTTTGGGCTTGAGCGTTTTGCT
CGGTCTGAGCGTCCCCACCACGACGCTCGCAGCTCACCTGCGCCGCAACG
ACTGGAACGCTTCTTCAGTCCTCAACCTGGCCAACGACAACACCATCGAG
GACGCCGGTCTTCATACAAGCATCAACAATGCCATCCATGATAAGGGACC
CCTTGCCAGTCAGGACAAGACTGGTACGCTGGAGTGGGCAGGGCAGGCAC
AGGCTACCCCCAATGACACTGTCGTCTCTGTGTCGAACCCGATGGGAGAC
CAGGGCGGGGGGCTTACGGATCAGATCCCTGGCATGATGCCATTTGGTAC
TGGCATTGTGAGTGTCCCGGTTGACAAGGGCGAGGCACCTACTGCTGACG
AAATGCCGTAA
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Synonyms
Publications