jgi.p|Nanoce1779_2|573993, mRNA_745 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573993
Unique Name	mRNA_745
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2287
Alignment location	scaffold_2:341650..343936 -

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Properties


Property Name	Value
TranscriptId	574079
Track	FilteredModels2
ProteinId	573993

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:341650..343936 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573993	gene_745	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573993	mRNA_745-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_745	CDS_745	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:341650..343936-
coding sequence from alignment at scaffold_2:341650..343936-

mRNA sequence

>mRNA_745 ID=mRNA_745|Name=jgi.p|Nanoce1779_2|573993|organism=Nannochloropsis oceanica|type=mRNA|length=2287bp
GAGAGGCAAACTATGGCATTCAGAACCTGCGGTTGGTACAGCAGCAGAAG
CAGAAGCAGCCGCAGCAGCCGCAGCAACAGCAGCAACAGCAGCTGAAGGG
CGAGGGGCTGACGGCGCTGGTGGGCCAAATCGCTACCCTTCTCAGTCAAC
TCGAGCAGCAATCTCATATTTCCTTAGAAGAAGTAGGAGGAGGAGTAGAA
GGGGGAAAAGGAGGTGGAGAGACACTTTTCGCTTCCTTTTCGTTCCTCTC
GGACTGCGACAACAGCAGTGATGGCCTCTTTATTCAGCCTGAGGAGCTGG
TCCCGCATGAGGATCTAAGTGAATGGGCGCATATGGATGATGAAGGAGAG
GGAGCAGCAGCAGCTGCAGCGAGAACAGCAGCTGCAGAGGAGTATGAAAA
TCGCAGGCAACTAATCGTGCAGCAGCTTGCATTGAGGGCCATGGAAATCG
CGGAGACTCTGACGAGGAAATCGACAGAGTTTGAGATGGAGCTAGAGAGG
GTGAGGAGAGAGAAACTCTTTTATGAGGCCAAAGCCATGTATGCCGTCCA
GCATTGCATGCGGTTGAGGGAGATGACACAGGCAGTAAGTGCCAAGGCTG
CTGGGTTTGTGGCGCACGCGGAGGTGCTCTTACAAGCGACCGAGATCGAG
GATAATAGTGGCAGCAGCCGTATGCGAAGCAACGAGGGAAGCAAGATTAG
CAAAGGCAGCATCGGCGGTGTTGGAATGAAGCAGCACGAGTTGGACGAAG
GGAGGAAAATGCCCGTGGCTGGCTCGGATGCCGAGGTTCTCTTGGCTCTC
CAAGCGACGAAGGGGGCATTGGAGGAGGCGTTGCGGGAGCAATACGAGGC
TCACGCCTTGCTCGAAAACGAACTTATTAGCGAAGAAGTCGTCGGAGTCA
TTGACAGCAGCAGCAATAGCAGCAACAGCAATAGTAGGAATAGAAGCAGA
GGCCTTTTTGAGAATACTGCGACGCTCACGGCCCGTACCCACCCTGCTTC
TGCTCCAATTCGTGTCACTGAACCCCTCCCCACCATCACTTCCACCAGCA
GTGACAGCACCGTGCCCCGCCACCAACAGCTAGGCCAGCAGCAGCAGCAG
GAGCAGCAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGCAGACGCA
ATGGCAAGACCATTCTCCACCCACCTCCCTCTCTCCATCCCTTTCTCGCC
CTAATCCGCACCCGTACTACCCTATGCCCAACCACGCAATCCTGTACGAG
GAAGAAAGCCGCCTGAAAGCCCAACGACGAAAATTGAGAGAGGAACGCCG
GCGAATGGAGGCGCTCAGCACGCAGCTCTCCCATCAAAAACGGAGCATCG
ACGAACAAATGATAATGCTAACTGAAGAGGTCGCCTATTCACGCAGGTGT
CTGGCGCAACGTAAGGCTGAGCTACGAGCCGCTCCTGAGACCAAAACAAA
AAGGAGCAGCAGCAGCAGCAACAGTAGCAGCAACAGTAGCAGCAGCAGTA
GCAGCAGCAACACTACTGGACACATTCCCACCTCGGAAAGAACCCAACGA
GTACACTCGCCCCATTTGTCATTTAGTCCTTCTCCGTCTTCTTCTCCCAC
TCATGTTGTTGTTGCCGTTGATGCTGCTACAGCTGCCGCTGTTTCCACAC
CGGCAAACCCTCCTCCGGTCCCTGCTACTTCCTTGTCGTTGCTTAAAAGG
AAAGCTAGGGCAACCAAGGGAGTGAAGACCGTCGATAAATTACAAGAGCA
GGAGAGGGACATGGAACTGTTGGCGATTTACAAACAGCAGCATCAACAAC
AGCAAAAGCAGCAGCAGCTGCAGCAGCGGGAGAAGTGGCGAGGGGATGAC
TGGACGGAGACCACGGCCATCAAGACTCAGCCCGAGAGCCCGCCTTCCTT
TTCGAGTCGTCTGTACGCCGCCGCCACCAACGTCAACAACATAAGCATCA
ACAGCAACAGCAGCAGTCAATTCAGTACCAAGAGCAGCAGTCCTAGTTCG
CGGTCCTTACTCAAAAGAGGCGCCAAACGCAAGTCCAGCACCGTCCGCAG
CCCGGAGCTGGAGAAGCCCTTGGTTGGTAAAACAGACATGATCCGGTTTG
CGAATGAGCTTAACCGGTTGCAGCAGCGCTTGAATGAGGAGCGGTCTATG
GTCTCGGGCCACGCTTCGCGGACATCGCCCTGAATTCGGGAATGGAGAAA
GTGGAGGGAGGGAGGGAGGGAGGATAAGGACGGTGATAGATGTAGAGACC
AAACTGGATGAAAAGGGCACTGACAGTGACAAGGGAG

protein sequence of jgi.p|Nanoce1779_2|573993

>mRNA_745-protein ID=mRNA_745-protein|Name=jgi.p|Nanoce1779_2|573993|organism=Nannochloropsis oceanica|type=polypeptide|length=617bp
MDDEGEGAAAAAARTAAAEEYENRRQLIVQQLALRAMEIAETLTRKSTEF
EMELERVRREKLFYEAKAMYAVQHCMRLREMTQAVSAKAAGFVAHAEVLL
QATEIEDNSGSSRMRSNEGSKISKGSIGGVGMKQHELDEGRKMPVAGSDA
EVLLALQATKGALEEALREQYEAHALLENELISEEVVGVIDSSSNSSNSN
SRNRSRGLFENTATLTARTHPASAPIRVTEPLPTITSTSSDSTVPRHQQL
GQQQQQEQQQEQEQEQEQEQQTQWQDHSPPTSLSPSLSRPNPHPYYPMPN
HAILYEEESRLKAQRRKLREERRRMEALSTQLSHQKRSIDEQMIMLTEEV
AYSRRCLAQRKAELRAAPETKTKRSSSSSNSSSNSSSSSSSSNTTGHIPT
SERTQRVHSPHLSFSPSPSSSPTHVVVAVDAATAAAVSTPANPPPVPATS
LSLLKRKARATKGVKTVDKLQEQERDMELLAIYKQQHQQQQKQQQLQQRE
KWRGDDWTETTAIKTQPESPPSFSSRLYAAATNVNNISINSNSSSQFSTK
SSSPSSRSLLKRGAKRKSSTVRSPELEKPLVGKTDMIRFANELNRLQQRL
NEERSMVSGHASRTSP*

mRNA from alignment at scaffold_2:341650..343936-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_745 ID=mRNA_745|Name=jgi.p|Nanoce1779_2|573993|organism=Nannochloropsis oceanica|type=mRNA|length=2287bp|location=Sequence derived from alignment at scaffold_2:341650..343936- (Nannochloropsis oceanica)
GAGAGGCAAACTATGGCATTCAGAACCTGCGGTTGGTACAGCAGCAGAAG
CAGAAGCAGCCGCAGCAGCCGCAGCAACAGCAGCAACAGCAGCTGAAGGG
CGAGGGGCTGACGGCGCTGGTGGGCCAAATCGCTACCCTTCTCAGTCAAC
TCGAGCAGCAATCTCATATTTCCTTAGAAGAAGTAGGAGGAGGAGTAGAA
GGGGGAAAAGGAGGTGGAGAGACACTTTTCGCTTCCTTTTCGTTCCTCTC
GGACTGCGACAACAGCAGTGATGGCCTCTTTATTCAGCCTGAGGAGCTGG
TCCCGCATGAGGATCTAAGTGAATGGGCGCATATGGATGATGAAGGAGAG
GGAGCAGCAGCAGCTGCAGCGAGAACAGCAGCTGCAGAGGAGTATGAAAA
TCGCAGGCAACTAATCGTGCAGCAGCTTGCATTGAGGGCCATGGAAATCG
CGGAGACTCTGACGAGGAAATCGACAGAGTTTGAGATGGAGCTAGAGAGG
GTGAGGAGAGAGAAACTCTTTTATGAGGCCAAAGCCATGTATGCCGTCCA
GCATTGCATGCGGTTGAGGGAGATGACACAGGCAGTAAGTGCCAAGGCTG
CTGGGTTTGTGGCGCACGCGGAGGTGCTCTTACAAGCGACCGAGATCGAG
GATAATAGTGGCAGCAGCCGTATGCGAAGCAACGAGGGAAGCAAGATTAG
CAAAGGCAGCATCGGCGGTGTTGGAATGAAGCAGCACGAGTTGGACGAAG
GGAGGAAAATGCCCGTGGCTGGCTCGGATGCCGAGGTTCTCTTGGCTCTC
CAAGCGACGAAGGGGGCATTGGAGGAGGCGTTGCGGGAGCAATACGAGGC
TCACGCCTTGCTCGAAAACGAACTTATTAGCGAAGAAGTCGTCGGAGTCA
TTGACAGCAGCAGCAATAGCAGCAACAGCAATAGTAGGAATAGAAGCAGA
GGCCTTTTTGAGAATACTGCGACGCTCACGGCCCGTACCCACCCTGCTTC
TGCTCCAATTCGTGTCACTGAACCCCTCCCCACCATCACTTCCACCAGCA
GTGACAGCACCGTGCCCCGCCACCAACAGCTAGGCCAGCAGCAGCAGCAG
GAGCAGCAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGCAGACGCA
ATGGCAAGACCATTCTCCACCCACCTCCCTCTCTCCATCCCTTTCTCGCC
CTAATCCGCACCCGTACTACCCTATGCCCAACCACGCAATCCTGTACGAG
GAAGAAAGCCGCCTGAAAGCCCAACGACGAAAATTGAGAGAGGAACGCCG
GCGAATGGAGGCGCTCAGCACGCAGCTCTCCCATCAAAAACGGAGCATCG
ACGAACAAATGATAATGCTAACTGAAGAGGTCGCCTATTCACGCAGGTGT
CTGGCGCAACGTAAGGCTGAGCTACGAGCCGCTCCTGAGACCAAAACAAA
AAGGAGCAGCAGCAGCAGCAACAGTAGCAGCAACAGTAGCAGCAGCAGTA
GCAGCAGCAACACTACTGGACACATTCCCACCTCGGAAAGAACCCAACGA
GTACACTCGCCCCATTTGTCATTTAGTCCTTCTCCGTCTTCTTCTCCCAC
TCATGTTGTTGTTGCCGTTGATGCTGCTACAGCTGCCGCTGTTTCCACAC
CGGCAAACCCTCCTCCGGTCCCTGCTACTTCCTTGTCGTTGCTTAAAAGG
AAAGCTAGGGCAACCAAGGGAGTGAAGACCGTCGATAAATTACAAGAGCA
GGAGAGGGACATGGAACTGTTGGCGATTTACAAACAGCAGCATCAACAAC
AGCAAAAGCAGCAGCAGCTGCAGCAGCGGGAGAAGTGGCGAGGGGATGAC
TGGACGGAGACCACGGCCATCAAGACTCAGCCCGAGAGCCCGCCTTCCTT
TTCGAGTCGTCTGTACGCCGCCGCCACCAACGTCAACAACATAAGCATCA
ACAGCAACAGCAGCAGTCAATTCAGTACCAAGAGCAGCAGTCCTAGTTCG
CGGTCCTTACTCAAAAGAGGCGCCAAACGCAAGTCCAGCACCGTCCGCAG
CCCGGAGCTGGAGAAGCCCTTGGTTGGTAAAACAGACATGATCCGGTTTG
CGAATGAGCTTAACCGGTTGCAGCAGCGCTTGAATGAGGAGCGGTCTATG
GTCTCGGGCCACGCTTCGCGGACATCGCCCTGAATTCGGGAATGGAGAAA
GTGGAGGGAGGGAGGGAGGGAGGATAAGGACGGTGATAGATGTAGAGACC
AAACTGGATGAAAAGGGCACTGACAGTGACAAGGGAG

Coding sequence (CDS) from alignment at scaffold_2:341650..343936-

>mRNA_745 ID=mRNA_745|Name=jgi.p|Nanoce1779_2|573993|organism=Nannochloropsis oceanica|type=CDS|length=1851bp|location=Sequence derived from alignment at scaffold_2:341650..343936- (Nannochloropsis oceanica)
ATGGATGATGAAGGAGAGGGAGCAGCAGCAGCTGCAGCGAGAACAGCAGC
TGCAGAGGAGTATGAAAATCGCAGGCAACTAATCGTGCAGCAGCTTGCAT
TGAGGGCCATGGAAATCGCGGAGACTCTGACGAGGAAATCGACAGAGTTT
GAGATGGAGCTAGAGAGGGTGAGGAGAGAGAAACTCTTTTATGAGGCCAA
AGCCATGTATGCCGTCCAGCATTGCATGCGGTTGAGGGAGATGACACAGG
CAGTAAGTGCCAAGGCTGCTGGGTTTGTGGCGCACGCGGAGGTGCTCTTA
CAAGCGACCGAGATCGAGGATAATAGTGGCAGCAGCCGTATGCGAAGCAA
CGAGGGAAGCAAGATTAGCAAAGGCAGCATCGGCGGTGTTGGAATGAAGC
AGCACGAGTTGGACGAAGGGAGGAAAATGCCCGTGGCTGGCTCGGATGCC
GAGGTTCTCTTGGCTCTCCAAGCGACGAAGGGGGCATTGGAGGAGGCGTT
GCGGGAGCAATACGAGGCTCACGCCTTGCTCGAAAACGAACTTATTAGCG
AAGAAGTCGTCGGAGTCATTGACAGCAGCAGCAATAGCAGCAACAGCAAT
AGTAGGAATAGAAGCAGAGGCCTTTTTGAGAATACTGCGACGCTCACGGC
CCGTACCCACCCTGCTTCTGCTCCAATTCGTGTCACTGAACCCCTCCCCA
CCATCACTTCCACCAGCAGTGACAGCACCGTGCCCCGCCACCAACAGCTA
GGCCAGCAGCAGCAGCAGGAGCAGCAGCAGGAGCAGGAGCAGGAGCAGGA
GCAGGAGCAGCAGACGCAATGGCAAGACCATTCTCCACCCACCTCCCTCT
CTCCATCCCTTTCTCGCCCTAATCCGCACCCGTACTACCCTATGCCCAAC
CACGCAATCCTGTACGAGGAAGAAAGCCGCCTGAAAGCCCAACGACGAAA
ATTGAGAGAGGAACGCCGGCGAATGGAGGCGCTCAGCACGCAGCTCTCCC
ATCAAAAACGGAGCATCGACGAACAAATGATAATGCTAACTGAAGAGGTC
GCCTATTCACGCAGGTGTCTGGCGCAACGTAAGGCTGAGCTACGAGCCGC
TCCTGAGACCAAAACAAAAAGGAGCAGCAGCAGCAGCAACAGTAGCAGCA
ACAGTAGCAGCAGCAGTAGCAGCAGCAACACTACTGGACACATTCCCACC
TCGGAAAGAACCCAACGAGTACACTCGCCCCATTTGTCATTTAGTCCTTC
TCCGTCTTCTTCTCCCACTCATGTTGTTGTTGCCGTTGATGCTGCTACAG
CTGCCGCTGTTTCCACACCGGCAAACCCTCCTCCGGTCCCTGCTACTTCC
TTGTCGTTGCTTAAAAGGAAAGCTAGGGCAACCAAGGGAGTGAAGACCGT
CGATAAATTACAAGAGCAGGAGAGGGACATGGAACTGTTGGCGATTTACA
AACAGCAGCATCAACAACAGCAAAAGCAGCAGCAGCTGCAGCAGCGGGAG
AAGTGGCGAGGGGATGACTGGACGGAGACCACGGCCATCAAGACTCAGCC
CGAGAGCCCGCCTTCCTTTTCGAGTCGTCTGTACGCCGCCGCCACCAACG
TCAACAACATAAGCATCAACAGCAACAGCAGCAGTCAATTCAGTACCAAG
AGCAGCAGTCCTAGTTCGCGGTCCTTACTCAAAAGAGGCGCCAAACGCAA
GTCCAGCACCGTCCGCAGCCCGGAGCTGGAGAAGCCCTTGGTTGGTAAAA
CAGACATGATCCGGTTTGCGAATGAGCTTAACCGGTTGCAGCAGCGCTTG
AATGAGGAGCGGTCTATGGTCTCGGGCCACGCTTCGCGGACATCGCCCTG
A

Synonyms

Publications