jgi.p|Nanoce1779_2|573972, mRNA_742 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573972
Unique NamemRNA_742
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1211
Alignment locationscaffold_2:329417..330778 +

Link to JBrowse

Properties
Property NameValue
TranscriptId574058
TrackFilteredModels2
ProteinId573972
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:329417..330778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573972gene_742Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573972mRNA_742-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_742CDS_742Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_742 ID=mRNA_742|Name=jgi.p|Nanoce1779_2|573972|organism=Nannochloropsis oceanica|type=mRNA|length=1211bp
TCACAAACTACTAAAAAGATTGTCAGCCTGCTATGTGGGGGTGCCCCATG
GCGCCGTCTACAGTGCTGGCATGCTGTTATCAAAGCAAGGATCGCTGTTG
CGGATGCAAAACACGGCACGACCGTCTCCATTTTTTCTTACAATTGTTTG
ACCGAAACTCCACCCACACGACAGCACAGGCCACAGCATAGACCTCGCTC
TCAAGTCCCCAATTTTTCCCGCTTCGTCATGATGGCGACCTTGCGCCGCT
CAGGTGGAGCTGCGATCGAAGCCTCCATCGTTCTCCTCGTCCTCCTGTGC
CTTTCTTCAACCAGGGCCTTCGTGCCTGGGCTACCCCGCCAGTCTATCAG
TGCCTGGCCATCGCCATCATTCAAGATGCAGCCGTCACTACAGCAGCAAC
AGCTCTCTCGCAGTACAATAGGCTCCACGCAACTCAGCGCGGTGGACGAC
GCCGATGAAGTCACAAAAAAATTCGGACTGGAAGCGGGCCTCTTCTCCAT
ATTCAAGTCAGGCGCAAACAAAGAAGGCAAGGCCGTGCAAGCCAAGGATC
TATTGGCCAAATACGGATCCGCCTACCTCGCCACCTCCATCTCCCTCTCA
ATTGTCTCCTTCTCCTTGTGTTATGCCTTGGTCACAGCCGGAGTAGACGT
GCCGTCCTTGCTAGCCAAGGTGGGCATCACGGCGAGCTCCCAAACCGAGA
CTGCGGGGACGGTTGCTCTTGCCTACGCAGCACACAAGGCAGCTTCTCCC
ATTCGTTTTCCGCCCACAGTGGCGTTGACGCCGTTTGTAGCCAATGCGTT
CGGCAAGAAGCCGGCGGCGGAAGACGCGGAGGAGTAGGTTGAGATATGAT
GAAAAAAGGATTGAGACCTGGGAGTCGGTTTGACACGGGAGGACACAGAA
TAGAAAGATGGTGTCCTTTGGAAGGAAAAGACGGGTAGCGAGACAGGCTC
CTTATTTGCAGTTAACATATATATAAATACTTATGGAAGTTAATGAGTGA
AAAGAGGCAAGTATGTTTAATGAGGTCTTCGCACGAAAATGTCTATTTTT
GTTTGTCATTTCACCTTTCGTAGGAGTGGGTCCAATCAGTTAGGATAATG
AGTAGGGATTGAGAAGGTGGGGATGAATAGCGACGTAAGTAAGCTCCAAC
ACGAACACCAACACCAAAAAGAAGAAGATAAAAAGAAGCAAATATGTGTG
TACGTAAAAAA
back to top

protein sequence of jgi.p|Nanoce1779_2|573972

>mRNA_742-protein ID=mRNA_742-protein|Name=jgi.p|Nanoce1779_2|573972|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MMATLRRSGGAAIEASIVLLVLLCLSSTRAFVPGLPRQSISAWPSPSFKM
QPSLQQQQLSRSTIGSTQLSAVDDADEVTKKFGLEAGLFSIFKSGANKEG
KAVQAKDLLAKYGSAYLATSISLSIVSFSLCYALVTAGVDVPSLLAKVGI
TASSQTETAGTVALAYAAHKAASPIRFPPTVALTPFVANAFGKKPAAEDA
EE*
back to top

mRNA from alignment at scaffold_2:329417..330778+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_742 ID=mRNA_742|Name=jgi.p|Nanoce1779_2|573972|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp|location=Sequence derived from alignment at scaffold_2:329417..330778+ (Nannochloropsis oceanica)
TCACAAACTACTAAAAAGATTGTCAGCCTGCTATGTGGGGGTGCCCCATG
GCGCCGTCTACAGTGCTGGCATGCTGTTATCAAAGCAAGGATCGCTGTTG
CGGATGCAAAACACGGCACGACCGTCTCCATTTTTTCTTACAATTGTTTG
ACCGAAACTCCACCCACACGACAGCACAGGCCACAGCATAGACCTCGCTC
TCAAGTCCCCAATTTTTCCCGCTTCGTCATGATGGCGACCTTGCGCCGCT
CAGGTGGAGCTGCGATCGAAGCCTCCATCGTTCTCCTCGTCCTCCTGTGC
CTTTCTTCAACCAGGGCCTTCGTGCCTGGGCTACCCCGCCAGTCTATCAG
TGCCTGGCCATCGCCATCATTCAAGATGCAGCCGTCACTACAGCAGCAAC
AGGTACGTGAACCATGTGTCATGGAAGCGGAGAGAGTGCGTGGTGCAGTA
GGAGGATTAAAGGGACATCACAATGACGTGGCCCGAGTTCTGACATCCTC
AACCATAGACTCATCCACTGACCCCCGCCCCCCTCCTACCTATTCGACAA
CAGCTCTCTCGCAGTACAATAGGCTCCACGCAACTCAGCGCGGTGGACGA
CGCCGATGAAGTCACAAAAAAATTCGGACTGGAAGCGGGCCTCTTCTCCA
TATTCAAGTCAGGCGCAAACAAAGAAGGCAAGGCCGTGCAAGCCAAGGAT
CTATTGGCCAAATACGGATCCGCCTACCTCGCCACCTCCATCTCCCTCTC
AATTGTCTCCTTCTCCTTGTGTTATGCCTTGGTCACAGCCGGAGTAGACG
TGCCGTCCTTGCTAGCCAAGGTGGGCATCACGGCGAGCTCCCAAACCGAG
ACTGCGGGGACGGTTGCTCTTGCCTACGCAGCACACAAGGCAGCTTCTCC
CATTCGTTTTCCGCCCACAGTGGCGTTGACGCCGTTTGTAGCCAATGCGT
TCGGCAAGAAGCCGGCGGCGGAAGACGCGGAGGAGTAGGTTGAGATATGA
TGAAAAAAGGATTGAGACCTGGGAGTCGGTTTGACACGGGAGGACACAGA
ATAGAAAGATGGTGTCCTTTGGAAGGAAAAGACGGGTAGCGAGACAGGCT
CCTTATTTGCAGTTAACATATATATAAATACTTATGGAAGTTAATGAGTG
AAAAGAGGCAAGTATGTTTAATGAGGTCTTCGCACGAAAATGTCTATTTT
TGTTTGTCATTTCACCTTTCGTAGGAGTGGGTCCAATCAGTTAGGATAAT
GAGTAGGGATTGAGAAGGTGGGGATGAATAGCGACGTAAGTAAGCTCCAA
CACGAACACCAACACCAAAAAGAAGAAGATAAAAAGAAGCAAATATGTGT
GTACGTAAAAAA
back to top

Coding sequence (CDS) from alignment at scaffold_2:329417..330778+

>mRNA_742 ID=mRNA_742|Name=jgi.p|Nanoce1779_2|573972|organism=Nannochloropsis oceanica|type=CDS|length=1218bp|location=Sequence derived from alignment at scaffold_2:329417..330778+ (Nannochloropsis oceanica)
ATGATGGCGACCTTGCGCCGCTCAGGTGGAGCTGCGATCGAAGCCTCCAT
CGTTCTCCTCGTCCTCCTGTGCCTTTCTTCAACCAGGGCCTTCGTGCCTG
GGCTACCCCGCCAGTCTATCAGTGCCTGGCCATCGCCATCATTCAAGATG
CAGCCGTCACTACAGCAGCAACAGCTCTCTCGCAGTACAATAGGCTCCAC
GCAACTCAGCGCGGTGGACGACGCCGATGAAGTCACAAAAAAATTCGGAC
TGGAAGCGGGCCTCTTCTCCATATTCAAGTCAGGCGCAAACAAAGAAGGC
AAGGCCGTGCAAGCCAAGGATCTATTGGCCAAATACGGATCCGCCTACCT
CGCCACCTCCATCTCCCTCTCAATTGTCTCCTTCTCCTTGTGTTATGCCT
TGGTCACAGCCGGAGTAGACGTGCCGTCCTTGCTAGCCAAGGTGGGCATC
ACGGCGAGCTCCCAAACCGAGACTGCGGGGACGGTTGCTCTTGCCTACGC
AGCACACAAGGCAGCTTCTCCCATTCGTTTTCCGCCCACAGTGGCGTTGA
CGCCGTTTGTAGCCAATGCGTTCGGCAAGAAGCCGGCGGCGGAAGACGCG
GAGGAGTAGATGATGGCGACCTTGCGCCGCTCAGGTGGAGCTGCGATCGA
AGCCTCCATCGTTCTCCTCGTCCTCCTGTGCCTTTCTTCAACCAGGGCCT
TCGTGCCTGGGCTACCCCGCCAGTCTATCAGTGCCTGGCCATCGCCATCA
TTCAAGATGCAGCCGTCACTACAGCAGCAACAGCTCTCTCGCAGTACAAT
AGGCTCCACGCAACTCAGCGCGGTGGACGACGCCGATGAAGTCACAAAAA
AATTCGGACTGGAAGCGGGCCTCTTCTCCATATTCAAGTCAGGCGCAAAC
AAAGAAGGCAAGGCCGTGCAAGCCAAGGATCTATTGGCCAAATACGGATC
CGCCTACCTCGCCACCTCCATCTCCCTCTCAATTGTCTCCTTCTCCTTGT
GTTATGCCTTGGTCACAGCCGGAGTAGACGTGCCGTCCTTGCTAGCCAAG
GTGGGCATCACGGCGAGCTCCCAAACCGAGACTGCGGGGACGGTTGCTCT
TGCCTACGCAGCACACAAGGCAGCTTCTCCCATTCGTTTTCCGCCCACAG
TGGCGTTGACGCCGTTTGTAGCCAATGCGTTCGGCAAGAAGCCGGCGGCG
GAAGACGCGGAGGAGTAG
back to top
Synonyms
Publications