jgi.p|Nanoce1779_2|573970, mRNA_741 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573970
Unique NamemRNA_741
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1232
Alignment locationscaffold_2:328040..329271 -

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Properties
Property NameValue
TranscriptId574056
TrackFilteredModels2
ProteinId573970
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:328040..329271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573970gene_741Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573970mRNA_741-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_741CDS_741Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_741 ID=mRNA_741|Name=jgi.p|Nanoce1779_2|573970|organism=Nannochloropsis oceanica|type=mRNA|length=1232bp
ACAGAGCAGATATGAAATAGAACATCCTCGCCAACGACCGCGCCTTGATG
CATCTGCAGCGGCGCCGGAGGAACTGTCTCGCCCCGCCCACACCGTTTCC
TCTCCTCCTCTTCCCCCTCCTCCTCGTCCTCCTCCTCCCCCACTTGACCC
AGGCCTTTACGCCCCGCATCAGCGCCGTGGTCACGGGCGGCAATCGAGGA
CTGGGCCTGGCCACGGCCGAATTATTGGCTGAAATGGGCTACCGTGTCAT
TCTAACGGCGCGCAACGTGGAGGAAGGCCAGGCGCACGTCATGGACATTC
AGAAGCGGCATGGGCAAGATCGATGTGAATTTGTGCCTTTGGACGTGAGC
CAGCCAGAAAGCATCCAGACTTTGATGGCACACTTGAAGCAGGACAAGGA
GCTGCGGGAAGGCATGCCGCATTTATGGATCAATAACGCAGGGATCTGCG
TGCGTGACGAAGACGAAGCAGCGGCAGTAGATGGGAGCGGAGGGAGGGAA
GGCGTGTATCAGCGCACGCTGGACGTTAATGCGTGGGGACCCGTAGCACT
GATGGACGCATGTTTGCCAGGCATGCAAAAACGTGGGTTTGGATGTGTCA
TTAACATCTCGAGCGGGGATGGTGAGTTGGCATATTTGCACAGTCTGGTG
GCCAAGCGCCTAAGGGAGATGAAAAGCAAGGGAACGCTACGTCAGTACGC
CAACCGAGTGGCAAGCAATCAGGAGCAAGGCCTCTGGCCAAAAGGGGGAG
GCCTGGCGCCTGTGCCATGGCCGGCGTATTGCTTTTCGAAATCGGTACTA
AATACAGCGACACGCTTGATGCACGCCCAGACACAGGAGACTGCGGCAGA
GGCTGGCAGGAATAGACTTCGGCTGCGGGTGTTGGCGTTGTGCCCGGGGG
ATGTTGCGACGAGTATGTGCGATGATGATGCTGTGGTTGATGCTGTGTCA
CCGAGGGAAGCGGCCTTGGACGTGGTGTGGGCGGCGCTGCACCCGGACGA
ATGTCCAGGAGGATTTTTTTATCGGCATCGACGAATGATACCCTGGTGAA
AGGAGGATGTGTTTGTTAATGGGATTGAATGCACTGAGTTCTATAGCCAA
ATGTAGAAGGGTGGGGAGGAGTAACGACAGACGGCATAAAGACGTGTGAA
TTGGTCTTAAGTACGAAGCGAGAAAGAAAAGTAAGTGATTAAAAGCGTGC
TTGGAAGAAATTTAGTATTAAAAATATATTCA
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protein sequence of jgi.p|Nanoce1779_2|573970

>mRNA_741-protein ID=mRNA_741-protein|Name=jgi.p|Nanoce1779_2|573970|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MHLQRRRRNCLAPPTPFPLLLFPLLLVLLLPHLTQAFTPRISAVVTGGNR
GLGLATAELLAEMGYRVILTARNVEEGQAHVMDIQKRHGQDRCEFVPLDV
SQPESIQTLMAHLKQDKELREGMPHLWINNAGICVRDEDEAAAVDGSGGR
EGVYQRTLDVNAWGPVALMDACLPGMQKRGFGCVINISSGDGELAYLHSL
VAKRLREMKSKGTLRQYANRVASNQEQGLWPKGGGLAPVPWPAYCFSKSV
LNTATRLMHAQTQETAAEAGRNRLRLRVLALCPGDVATSMCDDDAVVDAV
SPREAALDVVWAALHPDECPGGFFYRHRRMIPW*
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mRNA from alignment at scaffold_2:328040..329271-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_741 ID=mRNA_741|Name=jgi.p|Nanoce1779_2|573970|organism=Nannochloropsis oceanica|type=mRNA|length=1232bp|location=Sequence derived from alignment at scaffold_2:328040..329271- (Nannochloropsis oceanica)
ACAGAGCAGATATGAAATAGAACATCCTCGCCAACGACCGCGCCTTGATG
CATCTGCAGCGGCGCCGGAGGAACTGTCTCGCCCCGCCCACACCGTTTCC
TCTCCTCCTCTTCCCCCTCCTCCTCGTCCTCCTCCTCCCCCACTTGACCC
AGGCCTTTACGCCCCGCATCAGCGCCGTGGTCACGGGCGGCAATCGAGGA
CTGGGCCTGGCCACGGCCGAATTATTGGCTGAAATGGGCTACCGTGTCAT
TCTAACGGCGCGCAACGTGGAGGAAGGCCAGGCGCACGTCATGGACATTC
AGAAGCGGCATGGGCAAGATCGATGTGAATTTGTGCCTTTGGACGTGAGC
CAGCCAGAAAGCATCCAGACTTTGATGGCACACTTGAAGCAGGACAAGGA
GCTGCGGGAAGGCATGCCGCATTTATGGATCAATAACGCAGGGATCTGCG
TGCGTGACGAAGACGAAGCAGCGGCAGTAGATGGGAGCGGAGGGAGGGAA
GGCGTGTATCAGCGCACGCTGGACGTTAATGCGTGGGGACCCGTAGCACT
GATGGACGCATGTTTGCCAGGCATGCAAAAACGTGGGTTTGGATGTGTCA
TTAACATCTCGAGCGGGGATGGTGAGTTGGCATATTTGCACAGTCTGGTG
GCCAAGCGCCTAAGGGAGATGAAAAGCAAGGGAACGCTACGTCAGTACGC
CAACCGAGTGGCAAGCAATCAGGAGCAAGGCCTCTGGCCAAAAGGGGGAG
GCCTGGCGCCTGTGCCATGGCCGGCGTATTGCTTTTCGAAATCGGTACTA
AATACAGCGACACGCTTGATGCACGCCCAGACACAGGAGACTGCGGCAGA
GGCTGGCAGGAATAGACTTCGGCTGCGGGTGTTGGCGTTGTGCCCGGGGG
ATGTTGCGACGAGTATGTGCGATGATGATGCTGTGGTTGATGCTGTGTCA
CCGAGGGAAGCGGCCTTGGACGTGGTGTGGGCGGCGCTGCACCCGGACGA
ATGTCCAGGAGGATTTTTTTATCGGCATCGACGAATGATACCCTGGTGAA
AGGAGGATGTGTTTGTTAATGGGATTGAATGCACTGAGTTCTATAGCCAA
ATGTAGAAGGGTGGGGAGGAGTAACGACAGACGGCATAAAGACGTGTGAA
TTGGTCTTAAGTACGAAGCGAGAAAGAAAAGTAAGTGATTAAAAGCGTGC
TTGGAAGAAATTTAGTATTAAAAATATATTCA
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Coding sequence (CDS) from alignment at scaffold_2:328040..329271-

>mRNA_741 ID=mRNA_741|Name=jgi.p|Nanoce1779_2|573970|organism=Nannochloropsis oceanica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_2:328040..329271- (Nannochloropsis oceanica)
ATGCATCTGCAGCGGCGCCGGAGGAACTGTCTCGCCCCGCCCACACCGTT
TCCTCTCCTCCTCTTCCCCCTCCTCCTCGTCCTCCTCCTCCCCCACTTGA
CCCAGGCCTTTACGCCCCGCATCAGCGCCGTGGTCACGGGCGGCAATCGA
GGACTGGGCCTGGCCACGGCCGAATTATTGGCTGAAATGGGCTACCGTGT
CATTCTAACGGCGCGCAACGTGGAGGAAGGCCAGGCGCACGTCATGGACA
TTCAGAAGCGGCATGGGCAAGATCGATGTGAATTTGTGCCTTTGGACGTG
AGCCAGCCAGAAAGCATCCAGACTTTGATGGCACACTTGAAGCAGGACAA
GGAGCTGCGGGAAGGCATGCCGCATTTATGGATCAATAACGCAGGGATCT
GCGTGCGTGACGAAGACGAAGCAGCGGCAGTAGATGGGAGCGGAGGGAGG
GAAGGCGTGTATCAGCGCACGCTGGACGTTAATGCGTGGGGACCCGTAGC
ACTGATGGACGCATGTTTGCCAGGCATGCAAAAACGTGGGTTTGGATGTG
TCATTAACATCTCGAGCGGGGATGGTGAGTTGGCATATTTGCACAGTCTG
GTGGCCAAGCGCCTAAGGGAGATGAAAAGCAAGGGAACGCTACGTCAGTA
CGCCAACCGAGTGGCAAGCAATCAGGAGCAAGGCCTCTGGCCAAAAGGGG
GAGGCCTGGCGCCTGTGCCATGGCCGGCGTATTGCTTTTCGAAATCGGTA
CTAAATACAGCGACACGCTTGATGCACGCCCAGACACAGGAGACTGCGGC
AGAGGCTGGCAGGAATAGACTTCGGCTGCGGGTGTTGGCGTTGTGCCCGG
GGGATGTTGCGACGAGTATGTGCGATGATGATGCTGTGGTTGATGCTGTG
TCACCGAGGGAAGCGGCCTTGGACGTGGTGTGGGCGGCGCTGCACCCGGA
CGAATGTCCAGGAGGATTTTTTTATCGGCATCGACGAATGATACCCTGGT
GA
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Synonyms
Publications