jgi.p|Nanoce1779_2|573966, mRNA_740 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573966
Unique NamemRNA_740
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length898
Alignment locationscaffold_2:325917..327077 +

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Properties
Property NameValue
TranscriptId574052
TrackFilteredModels2
ProteinId573966
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:325917..327077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573966gene_740Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573966mRNA_740-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_740CDS_740Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_740 ID=mRNA_740|Name=jgi.p|Nanoce1779_2|573966|organism=Nannochloropsis oceanica|type=mRNA|length=898bp
CCAACTCATATACTTAACAAATTCTCCCTCAAAAATGATACCACTTCCCG
CTGCTGCTGCTGCTGCTGCTGCTTCTTCTCCTCCTCGACTCCTCCTCCAC
CTCCTCAATCCTTCCACTGTCTTATGCGGATAGGTCCTTTGGGTCGTAAG
GTAGGCCCACACTCTTCTTGAAGTCTGCGGTCAGCGCGGGGTAGATCATC
CAGCACGCCATGATGCCAGCGGGGGCGCCCCAGGGAGCTAAACGCATCGC
TTCTCCGCCAAACTTCTTGACCATCTGTGTGGCATACTTTTGGGCAATAG
CGGCGCTAGCAGGAATCATCTTGTCCTGTAGAAGTGAGAGAGAGTGTTGC
AGATGGAAGTGGGAAGGGAGATAAGAGGGAGTAACTAAACCAGATTACCC
AGGAAGACAGGGCCGCACGTCTGAAGGCAAATAACTAATCAAGGACATTT
GTCGTCGCTTGGGTGCTCACGTAGGCGTGGATATCACCCACAGAGCCAAG
GAGGCCGGCAGCCTCCTCCCCCTTGAACGTGCACTCCCGGGGAAGAGCAA
GGTGCACCGACTGTCCCCGCCAGCCATCCTAGTAGCTATCCATGCATTCC
CCTCATGACTGTAGCTTGGTGCGCGTGTTTTAGCCGGGGCGTTTCTGGCC
TTCCCAACGACTGCAAGACAAGGTACGGTCGAGCGGTGGCTGCGTGCCAC
GAGGCAAGGGTCCAGCACTGTCTTCCTTCCCACCGGCTCTCTTATGCTTC
ATGCACGTATCCATCTCTGCACGCATACTGCTCGAGCGCGTATTGCGGCT
TGGTACATCGCATGGTGGTGCGTACATTGTTGTTGAGAGTAGGCAAAACG
ACCCTACAAGGCAGAAGACGTCGGAGACCGATATAGGATCAATCCCGA
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protein sequence of jgi.p|Nanoce1779_2|573966

>mRNA_740-protein ID=mRNA_740-protein|Name=jgi.p|Nanoce1779_2|573966|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MTVAWCACFSRGVSGLPNDCKTRYGRAVAACHEARVQHCLPSHRLSYASC
TYPSLHAYCSSAYCGLVHRMVVRTLLLRVGKTTLQGRRRRRPI*
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mRNA from alignment at scaffold_2:325917..327077+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_740 ID=mRNA_740|Name=jgi.p|Nanoce1779_2|573966|organism=Nannochloropsis oceanica|type=mRNA|length=1161bp|location=Sequence derived from alignment at scaffold_2:325917..327077+ (Nannochloropsis oceanica)
CCAACTCATATACTTAACAAATTCTCCCTCAAAAATGATACCACTTCCCG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTTCTCCTCCT
CGACTCCTCCTCCACCTCCTCAATCCTTCCACTGTCTTATGCGGATAGGT
CCTTTGGGTCGTAAGGTAGGCCCACACTCTTCTTGAAGTCTGCGGTCAGC
GCGGGGTAGATCATCCAGCACGCCATGATGCCTACAAAGGATTTTAAGGG
GGTGAAAGGAGGGCGGTCGTGAGTATAAGTTAGATGGATGGTGTGTGGTT
TGATGGCTGATCGAAAGAGTAATGTATTTTTCTTAGGTTGAATCATGCAT
TCAGCATGCCATTACGTCCGTGGTACATGCATTGAGGCCGTTTGGTGACC
CTCGTAATGAGTTGTACAGTCGACGTGAATGAATTCATACGGTTACCAGA
CCATCCTCCATCCGCCCAAGCTTACTTACCAGCGGGGGCGCCCCAGGGAG
CTAAACGCATCGCTTCTCCGCCAAACTTCTTGACCATCTGTGTGGCATAC
TTTTGGGCAATAGCGGCGCTAGCAGGAATCATCTTGTCCTGTAGAAGTGA
GAGAGAGTGTTGCAGATGGAAGTGGGAAGGGAGATAAGAGGGAGTAACTA
AACCAGATTACCCAGGAAGACAGGGCCGCACGTCTGAAGGCAAATAACTA
ATCAAGGACATTTGTCGTCGCTTGGGTGCTCACGTAGGCGTGGATATCAC
CCACAGAGCCAAGGAGGCCGGCAGCCTCCTCCCCCTTGAACGTGCACTCC
CGGGGAAGAGCAAGGTGCACCGACTGTCCCCGCCAGCCATCCTAGTAGCT
ATCCATGCATTCCCCTCATGACTGTAGCTTGGTGCGCGTGTTTTAGCCGG
GGCGTTTCTGGCCTTCCCAACGACTGCAAGACAAGGTACGGTCGAGCGGT
GGCTGCGTGCCACGAGGCAAGGGTCCAGCACTGTCTTCCTTCCCACCGGC
TCTCTTATGCTTCATGCACGTATCCATCTCTGCACGCATACTGCTCGAGC
GCGTATTGCGGCTTGGTACATCGCATGGTGGTGCGTACATTGTTGTTGAG
AGTAGGCAAAACGACCCTACAAGGCAGAAGACGTCGGAGACCGATATAGG
ATCAATCCCGA
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Coding sequence (CDS) from alignment at scaffold_2:325917..327077+

>mRNA_740 ID=mRNA_740|Name=jgi.p|Nanoce1779_2|573966|organism=Nannochloropsis oceanica|type=CDS|length=282bp|location=Sequence derived from alignment at scaffold_2:325917..327077+ (Nannochloropsis oceanica)
ATGACTGTAGCTTGGTGCGCGTGTTTTAGCCGGGGCGTTTCTGGCCTTCC
CAACGACTGCAAGACAAGGTACGGTCGAGCGGTGGCTGCGTGCCACGAGG
CAAGGGTCCAGCACTGTCTTCCTTCCCACCGGCTCTCTTATGCTTCATGC
ACGTATCCATCTCTGCACGCATACTGCTCGAGCGCGTATTGCGGCTTGGT
ACATCGCATGGTGGTGCGTACATTGTTGTTGAGAGTAGGCAAAACGACCC
TACAAGGCAGAAGACGTCGGAGACCGATATAG
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Synonyms
Publications