jgi.p|Nanoce1779_2|576126, mRNA_74 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576126
Unique Name	mRNA_74
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3369
Alignment location	scaffold_3:199786..203154 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576212
Track	FilteredModels2
ProteinId	576126

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:199786..203154 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576126	gene_74	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576126	mRNA_74-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_74	CDS_74	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:199786..203154+
coding sequence from alignment at scaffold_3:199786..203154+

mRNA sequence

>mRNA_74 ID=mRNA_74|Name=jgi.p|Nanoce1779_2|576126|organism=Nannochloropsis oceanica|type=mRNA|length=3369bp
GAAGCTTCTTGTCAGTTCAAAAGCAGCCCTTGTGCCCTCTACCCATCCAC
AAACACTGAGGCTCAAATTACTTGGCTTCATGACGAAGTGTAATCCCTCA
CAGGTCATCTGGCCATTCGTCTCTCACGCTCCCTTCATCTCTCACTGACA
GAAGCAAGGACACGACCCGCAGCGAGCATCATCATCATGCCTCCCGCCTG
TGCACCTAAACGAAGACGCCTTCTTTCTCCATCCGTCGTCCTGGTTCTTC
TTACCGCCAGCACCAGCACGCATGCCGTGAATCTCAAGTCGGATGGGAAG
GGTGGTTCCTACCACCCCCCGTCCTCCACCCTCAGCCTGGGTGCGGAAGG
CGACACCTACACTTTCGACACCAAGGTCCGCACGCTCGAGATCCTCAAGC
ATTTGCGTCAGGGCGACTTGCCGTTGGAGGTATTGGACGAGTATCTACCG
GGGAATGGCACGGTGGACTTTCAACTTGCAATGAAGGCTTGGGACGGGAG
TGACTTCACCTGCGCCCCCGTCCCTCAACCCGGACAGCAGGAAAAGAAGC
TGGGACAAGCAGGCGCAGAAGGAGAAGAAGACGGGAACAAAGGAGTAGTC
GCCGCACCTCTCTCTTCGCTGGGGGAGCCACCCGAGGCATTGGATCAGAA
ATTGACGGTACTTGAGAATACGTGCGCGATGTTGCGGACGCCAGGCTATT
GGGGTTATGAATGGTGCCATCGTCGGGAAGTGCGCCAATTTCACGAGATT
TCGCCTCCGGAAGGTGTGGAAGCCAACGCTGTGGGTGTCAGAGATCCGAT
TTGGAGCTTGGGGAAATTTGTTAGGACTGAAACGAGGTATTTTGATGGGA
GGAAGGAGAAAGGGGTGGCGTCAGTGGTGGACTACTTTGCTGACGGGCAG
ATGTGTGACGAGACAGGGATCGGGAGGCAGACAGCGGTGGAGTTCTATTG
TTGTAGTGGCGAGAGGTTGCCACCTGATGTGAGAACGAGGATTGGGGGGG
TCAATCCGGCGCCGATGGCTGTTGCGCAATTGACTAGCATGAAAGAGATG
TCGATTTGTAATTACTCTATGATTGTTTGCTCGCCTCTCCTATGTGACAG
TGACACTCTGTACTCCCTCGTGAGCTTGACGGGGGGTGCGGCTAACTCGC
AGGCGTTGAGGTTGTTAGAGCCACTTGCGTCGTATTGCCTGAAGAGGCAT
GAAGGGTTCTGGTCGTATGAATTTTGTTACAAGGGCGCGATTCGACAGTA
CCATACTGTGGCTATGCGGGATTCCACGGGCCAGGTGATGAGCAAGATAG
AGAGTGAATATATAATTGGTGCGTTCGAGCCTGTGCCGGAAAATTTCAAG
GAGGAGGAGCACGTTGTGAAGATAGAGAGGGATGGGGAGGAGGGGGGGCT
GAAGAGGACATTTTTTGAGAGGGAGTACCCGGGGGGTACGGAGTGTGATC
TGACGGGGGACAAGCGGGCGACGACAGTGGAATTTGTGTGTGGGGAGGGT
CCGCTGGACGTGTTTGAGTCAATAAAGGAGGATCGATCGTGTCATTACAA
GGCGGTCATATCTACGCCGAGGTTGTGCCGACATCCATCGTTTCGGAAGG
AGCGACCGGCGACGCATGTGGTGCAGTGTAAGCGACGGCCGGTGCAGAAA
TTGTTGGGCTTACAGGAAAAAGAGGGGGAGGAGGATGAGGGGGATGAGGA
GGATTACGTATTGGACGAGGATAACACATATGCGGACGAGGAAGGCGTGT
ATCCTAACGCAATTTGAGACCAATAAGCACACGAGCAAAAGAAAATGTGT
ATATGTTGAGTACGCATGTAATATTTGTGGATATGTGGGCAACGGGGCCA
CTGCATCAACATTTTTAAATTTATTATGCTAACGTTTGGTACTCCTCTTT
TAAGTTTAGCTTTCTGAGCGGGAGGATTGACGGAAGCTATAGCGGCCTTT
TCTTCATCTCATGGGTCTCCTCCAGCGTCCACTTGCATTGATTTCTGTGC
CTCCTCCCATGACATATATCTAATTACACAAACGCACTAATGTGAGACAG
GCGGTAAGGCCTAGCCCCCAGGCAGGCGTCGCCCGGTGCGGCCGAGGCAC
AACACAAAAAGAAAGAGAAGAGCCCAATTTAAACCCAGTCAAAGCTGAAT
TGACAAGCCTTTGGCACCTACCCTCCGACCCCCACCACCGCCTCCTTCAG
ACCATGGACGCATTATCCGATGTGCTGAGGATCGTGCACTGTATGCAGAG
CTGCCGTAACATCGAAGAGGTTCAGGAAAAGGGTGAGGCTAGTGTACCCT
GTCTAGCGGCTTCGTTAACCCCCCCTCCATTTGCAGGCCCCGAGGCTGTG
TGTACAAATCGCGTGCTGTCTTGTATGTATCCCTCCCCTCAAGTACAAGG
GACGTACACATATATCCGAAATACTGCTTCTTCATTTCCCTCCCCACATG
TGTGCGTAAGTTCCCTGCAACCCCCCGCTTCCCAACCCACCAACCCTTGC
TTGTGTCTATTTTTGTAACCAACACACCTCCTCCCATCCTCCTTTTCGAA
ATTAGGCTGCCTCGAAGTTAGCAACCTCTGCGCCGACCCTACCCTCCGGG
GAATCCTCTGCCAAGCGGGGATCTTTGAAGCTTTGCTCGACGCCATCCGC
TCCTTCCCCTCCAACTTAAAAATCCTTTACACGGGCTTGCAAGCCATTGG
CACCTTCTCCTCCGGCAGCGATGAAGCCCGCCGTAGCCTTTGCATCTCCG
GGGCTGGACATGTCTTGATCGAATGCCTCCACCGTTTCGCGCACGACCAG
AGCGTGCTCTCCTCCATGTGGGGAAGCGACGTGCTTCCACAATGCGAGAT
TATTCGGTACCTGTGCATCATGTCCCTCACCCATCTCCTCCACCACAAAG
AAAACTTGACTCCCCTGCGCGAGGCCGGGACCTGGGAGATCGTCGTCCAA
ACTATGGCTGCATTCCCGGAGGAAGACGAGTTGAACCTCGGGGGATGTCG
CATCCTGGCGATTCTAGCTGAAGAACTTGGTAAATCCAATAAGGCTGAAA
TGGATTCAACCGTGCAACGAACCACTGCCTGTCAAGTAGTCATGGCAGTC
TCTGGACGAGTGCTTCACAATTTGGTGGCAGCGGCGGAGGGAAATTTGAC
ACTGACGCCTGATTTGTCGGAGATGTTGGTAAGGGGGGCATGGTTGACGT
GCTGTACCTTGGCGGCGCTTGCAAGTATTTCGCAGGAGGACGCGGCACAG
CTTGAGGCAATGGGGGCCAGTCAGCAGGTGGGGCGGATGATGGACGTGTG
CAGGGAAGAAATAGTGCAAGAATGGGGTGCTCGGGCTTTGGCGGAGGTGG
CGCTTTCGCTTCGGGGAGT

protein sequence of jgi.p|Nanoce1779_2|576126

>mRNA_74-protein ID=mRNA_74-protein|Name=jgi.p|Nanoce1779_2|576126|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MPPACAPKRRRLLSPSVVLVLLTASTSTHAVNLKSDGKGGSYHPPSSTLS
LGAEGDTYTFDTKVRTLEILKHLRQGDLPLEVLDEYLPGNGTVDFQLAMK
AWDGSDFTCAPVPQPGQQEKKLGQAGAEGEEDGNKGVVAAPLSSLGEPPE
ALDQKLTVLENTCAMLRTPGYWGYEWCHRREVRQFHEISPPEGVEANAVG
VRDPIWSLGKFVRTETRYFDGRKEKGVASVVDYFADGQMCDETGIGRQTA
VEFYCCSGERLPPDVRTRIGGVNPAPMAVAQLTSMKEMSICNYSMIVCSP
LLCDSDTLYSLVSLTGGAANSQALRLLEPLASYCLKRHEGFWSYEFCYKG
AIRQYHTVAMRDSTGQVMSKIESEYIIGAFEPVPENFKEEEHVVKIERDG
EEGGLKRTFFEREYPGGTECDLTGDKRATTVEFVCGEGPLDVFESIKEDR
SCHYKAVISTPRLCRHPSFRKERPATHVVQCKRRPVQKLLGLQEKEGEED
EGDEEDYVLDEDNTYADEEGVYPNAI*

mRNA from alignment at scaffold_3:199786..203154+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_74 ID=mRNA_74|Name=jgi.p|Nanoce1779_2|576126|organism=Nannochloropsis oceanica|type=mRNA|length=3369bp|location=Sequence derived from alignment at scaffold_3:199786..203154+ (Nannochloropsis oceanica)
GAAGCTTCTTGTCAGTTCAAAAGCAGCCCTTGTGCCCTCTACCCATCCAC
AAACACTGAGGCTCAAATTACTTGGCTTCATGACGAAGTGTAATCCCTCA
CAGGTCATCTGGCCATTCGTCTCTCACGCTCCCTTCATCTCTCACTGACA
GAAGCAAGGACACGACCCGCAGCGAGCATCATCATCATGCCTCCCGCCTG
TGCACCTAAACGAAGACGCCTTCTTTCTCCATCCGTCGTCCTGGTTCTTC
TTACCGCCAGCACCAGCACGCATGCCGTGAATCTCAAGTCGGATGGGAAG
GGTGGTTCCTACCACCCCCCGTCCTCCACCCTCAGCCTGGGTGCGGAAGG
CGACACCTACACTTTCGACACCAAGGTCCGCACGCTCGAGATCCTCAAGC
ATTTGCGTCAGGGCGACTTGCCGTTGGAGGTATTGGACGAGTATCTACCG
GGGAATGGCACGGTGGACTTTCAACTTGCAATGAAGGCTTGGGACGGGAG
TGACTTCACCTGCGCCCCCGTCCCTCAACCCGGACAGCAGGAAAAGAAGC
TGGGACAAGCAGGCGCAGAAGGAGAAGAAGACGGGAACAAAGGAGTAGTC
GCCGCACCTCTCTCTTCGCTGGGGGAGCCACCCGAGGCATTGGATCAGAA
ATTGACGGTACTTGAGAATACGTGCGCGATGTTGCGGACGCCAGGCTATT
GGGGTTATGAATGGTGCCATCGTCGGGAAGTGCGCCAATTTCACGAGATT
TCGCCTCCGGAAGGTGTGGAAGCCAACGCTGTGGGTGTCAGAGATCCGAT
TTGGAGCTTGGGGAAATTTGTTAGGACTGAAACGAGGTATTTTGATGGGA
GGAAGGAGAAAGGGGTGGCGTCAGTGGTGGACTACTTTGCTGACGGGCAG
ATGTGTGACGAGACAGGGATCGGGAGGCAGACAGCGGTGGAGTTCTATTG
TTGTAGTGGCGAGAGGTTGCCACCTGATGTGAGAACGAGGATTGGGGGGG
TCAATCCGGCGCCGATGGCTGTTGCGCAATTGACTAGCATGAAAGAGATG
TCGATTTGTAATTACTCTATGATTGTTTGCTCGCCTCTCCTATGTGACAG
TGACACTCTGTACTCCCTCGTGAGCTTGACGGGGGGTGCGGCTAACTCGC
AGGCGTTGAGGTTGTTAGAGCCACTTGCGTCGTATTGCCTGAAGAGGCAT
GAAGGGTTCTGGTCGTATGAATTTTGTTACAAGGGCGCGATTCGACAGTA
CCATACTGTGGCTATGCGGGATTCCACGGGCCAGGTGATGAGCAAGATAG
AGAGTGAATATATAATTGGTGCGTTCGAGCCTGTGCCGGAAAATTTCAAG
GAGGAGGAGCACGTTGTGAAGATAGAGAGGGATGGGGAGGAGGGGGGGCT
GAAGAGGACATTTTTTGAGAGGGAGTACCCGGGGGGTACGGAGTGTGATC
TGACGGGGGACAAGCGGGCGACGACAGTGGAATTTGTGTGTGGGGAGGGT
CCGCTGGACGTGTTTGAGTCAATAAAGGAGGATCGATCGTGTCATTACAA
GGCGGTCATATCTACGCCGAGGTTGTGCCGACATCCATCGTTTCGGAAGG
AGCGACCGGCGACGCATGTGGTGCAGTGTAAGCGACGGCCGGTGCAGAAA
TTGTTGGGCTTACAGGAAAAAGAGGGGGAGGAGGATGAGGGGGATGAGGA
GGATTACGTATTGGACGAGGATAACACATATGCGGACGAGGAAGGCGTGT
ATCCTAACGCAATTTGAGACCAATAAGCACACGAGCAAAAGAAAATGTGT
ATATGTTGAGTACGCATGTAATATTTGTGGATATGTGGGCAACGGGGCCA
CTGCATCAACATTTTTAAATTTATTATGCTAACGTTTGGTACTCCTCTTT
TAAGTTTAGCTTTCTGAGCGGGAGGATTGACGGAAGCTATAGCGGCCTTT
TCTTCATCTCATGGGTCTCCTCCAGCGTCCACTTGCATTGATTTCTGTGC
CTCCTCCCATGACATATATCTAATTACACAAACGCACTAATGTGAGACAG
GCGGTAAGGCCTAGCCCCCAGGCAGGCGTCGCCCGGTGCGGCCGAGGCAC
AACACAAAAAGAAAGAGAAGAGCCCAATTTAAACCCAGTCAAAGCTGAAT
TGACAAGCCTTTGGCACCTACCCTCCGACCCCCACCACCGCCTCCTTCAG
ACCATGGACGCATTATCCGATGTGCTGAGGATCGTGCACTGTATGCAGAG
CTGCCGTAACATCGAAGAGGTTCAGGAAAAGGGTGAGGCTAGTGTACCCT
GTCTAGCGGCTTCGTTAACCCCCCCTCCATTTGCAGGCCCCGAGGCTGTG
TGTACAAATCGCGTGCTGTCTTGTATGTATCCCTCCCCTCAAGTACAAGG
GACGTACACATATATCCGAAATACTGCTTCTTCATTTCCCTCCCCACATG
TGTGCGTAAGTTCCCTGCAACCCCCCGCTTCCCAACCCACCAACCCTTGC
TTGTGTCTATTTTTGTAACCAACACACCTCCTCCCATCCTCCTTTTCGAA
ATTAGGCTGCCTCGAAGTTAGCAACCTCTGCGCCGACCCTACCCTCCGGG
GAATCCTCTGCCAAGCGGGGATCTTTGAAGCTTTGCTCGACGCCATCCGC
TCCTTCCCCTCCAACTTAAAAATCCTTTACACGGGCTTGCAAGCCATTGG
CACCTTCTCCTCCGGCAGCGATGAAGCCCGCCGTAGCCTTTGCATCTCCG
GGGCTGGACATGTCTTGATCGAATGCCTCCACCGTTTCGCGCACGACCAG
AGCGTGCTCTCCTCCATGTGGGGAAGCGACGTGCTTCCACAATGCGAGAT
TATTCGGTACCTGTGCATCATGTCCCTCACCCATCTCCTCCACCACAAAG
AAAACTTGACTCCCCTGCGCGAGGCCGGGACCTGGGAGATCGTCGTCCAA
ACTATGGCTGCATTCCCGGAGGAAGACGAGTTGAACCTCGGGGGATGTCG
CATCCTGGCGATTCTAGCTGAAGAACTTGGTAAATCCAATAAGGCTGAAA
TGGATTCAACCGTGCAACGAACCACTGCCTGTCAAGTAGTCATGGCAGTC
TCTGGACGAGTGCTTCACAATTTGGTGGCAGCGGCGGAGGGAAATTTGAC
ACTGACGCCTGATTTGTCGGAGATGTTGGTAAGGGGGGCATGGTTGACGT
GCTGTACCTTGGCGGCGCTTGCAAGTATTTCGCAGGAGGACGCGGCACAG
CTTGAGGCAATGGGGGCCAGTCAGCAGGTGGGGCGGATGATGGACGTGTG
CAGGGAAGAAATAGTGCAAGAATGGGGTGCTCGGGCTTTGGCGGAGGTGG
CGCTTTCGCTTCGGGGAGT

Coding sequence (CDS) from alignment at scaffold_3:199786..203154+

>mRNA_74 ID=mRNA_74|Name=jgi.p|Nanoce1779_2|576126|organism=Nannochloropsis oceanica|type=CDS|length=1581bp|location=Sequence derived from alignment at scaffold_3:199786..203154+ (Nannochloropsis oceanica)
ATGCCTCCCGCCTGTGCACCTAAACGAAGACGCCTTCTTTCTCCATCCGT
CGTCCTGGTTCTTCTTACCGCCAGCACCAGCACGCATGCCGTGAATCTCA
AGTCGGATGGGAAGGGTGGTTCCTACCACCCCCCGTCCTCCACCCTCAGC
CTGGGTGCGGAAGGCGACACCTACACTTTCGACACCAAGGTCCGCACGCT
CGAGATCCTCAAGCATTTGCGTCAGGGCGACTTGCCGTTGGAGGTATTGG
ACGAGTATCTACCGGGGAATGGCACGGTGGACTTTCAACTTGCAATGAAG
GCTTGGGACGGGAGTGACTTCACCTGCGCCCCCGTCCCTCAACCCGGACA
GCAGGAAAAGAAGCTGGGACAAGCAGGCGCAGAAGGAGAAGAAGACGGGA
ACAAAGGAGTAGTCGCCGCACCTCTCTCTTCGCTGGGGGAGCCACCCGAG
GCATTGGATCAGAAATTGACGGTACTTGAGAATACGTGCGCGATGTTGCG
GACGCCAGGCTATTGGGGTTATGAATGGTGCCATCGTCGGGAAGTGCGCC
AATTTCACGAGATTTCGCCTCCGGAAGGTGTGGAAGCCAACGCTGTGGGT
GTCAGAGATCCGATTTGGAGCTTGGGGAAATTTGTTAGGACTGAAACGAG
GTATTTTGATGGGAGGAAGGAGAAAGGGGTGGCGTCAGTGGTGGACTACT
TTGCTGACGGGCAGATGTGTGACGAGACAGGGATCGGGAGGCAGACAGCG
GTGGAGTTCTATTGTTGTAGTGGCGAGAGGTTGCCACCTGATGTGAGAAC
GAGGATTGGGGGGGTCAATCCGGCGCCGATGGCTGTTGCGCAATTGACTA
GCATGAAAGAGATGTCGATTTGTAATTACTCTATGATTGTTTGCTCGCCT
CTCCTATGTGACAGTGACACTCTGTACTCCCTCGTGAGCTTGACGGGGGG
TGCGGCTAACTCGCAGGCGTTGAGGTTGTTAGAGCCACTTGCGTCGTATT
GCCTGAAGAGGCATGAAGGGTTCTGGTCGTATGAATTTTGTTACAAGGGC
GCGATTCGACAGTACCATACTGTGGCTATGCGGGATTCCACGGGCCAGGT
GATGAGCAAGATAGAGAGTGAATATATAATTGGTGCGTTCGAGCCTGTGC
CGGAAAATTTCAAGGAGGAGGAGCACGTTGTGAAGATAGAGAGGGATGGG
GAGGAGGGGGGGCTGAAGAGGACATTTTTTGAGAGGGAGTACCCGGGGGG
TACGGAGTGTGATCTGACGGGGGACAAGCGGGCGACGACAGTGGAATTTG
TGTGTGGGGAGGGTCCGCTGGACGTGTTTGAGTCAATAAAGGAGGATCGA
TCGTGTCATTACAAGGCGGTCATATCTACGCCGAGGTTGTGCCGACATCC
ATCGTTTCGGAAGGAGCGACCGGCGACGCATGTGGTGCAGTGTAAGCGAC
GGCCGGTGCAGAAATTGTTGGGCTTACAGGAAAAAGAGGGGGAGGAGGAT
GAGGGGGATGAGGAGGATTACGTATTGGACGAGGATAACACATATGCGGA
CGAGGAAGGCGTGTATCCTAACGCAATTTGA

Synonyms

Publications