jgi.p|Nanoce1779_2|636048, mRNA_739 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|636048
Unique Name	mRNA_739
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1329
Alignment location	scaffold_2:324374..325702 +

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Properties


Property Name	Value
TranscriptId	636134
Track	FilteredModels2
ProteinId	636048

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:324374..325702 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|636048	gene_739	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|636048	mRNA_739-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_739	CDS_739	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:324374..325702+
coding sequence from alignment at scaffold_2:324374..325702+

mRNA sequence

>mRNA_739 ID=mRNA_739|Name=jgi.p|Nanoce1779_2|636048|organism=Nannochloropsis oceanica|type=mRNA|length=1329bp
ATGGACCATCAGCATCACCCGCAGCATCAGCAACCCCACCACCCGACCAG
ATCTGCTTCACCCTCGCAGGAAGTAGGCATCTTTATCCCCGACCTCCGAG
GCTTTTTGCGTCAACTCAAGCGTTATTGGAATGCGCTTGCCGTCTCGTCC
TCCTCGTCGTCGCCCTGGGCCCGTCTACCAAGCTACGACGACTTTGAAGC
ATTTTGCCTGGTGGCCCTCCGCGCCTACATGCACGCAAATCACGGCCATA
CCTATATTGAGCGTGGTTTCACAACCGATTCCTTCGCCAAAATTGAAGCG
ACCGTGGAGGCCATCCGCGTCCCTCTTTACGTCTACGACATGATTCGCGA
GATGGCCCGCCCCATGATCCTCTCTGACCACGAACACCTCCTGCCGTACA
TGCCTTTCCTGAGCATGCGTGCCACACGCGGTCAAGGATCTGTGCCGGGC
TTGGGCTTCAAGTGTGTCCGGGATCCCCTCGTGACCGTCATGCTCTCGGG
ACTTTTATGGGGAGACCAGCAGCCGCAGCAGCAGCCGCAGCAGCAGCAGC
AGCAGCAGCAAATGATGCCAATCGTTAAAGAAAATCCAGATTTAGTCAAA
TGTCCCGCGTCTATCTGCAATAAATCATCCTTGGTGGTATACGGTGTGCA
TACTCTTAGAGACAATCAGCCTAGTCTCCCTGAATGGCGCGTGAAGGCTT
GCTGCATCTTGCGTCATCTCCAACCATCCTGTCCGTGGTACCGAAGCATT
CAACTACGAGCTGTGACTGGAGGAGGGGAAGAAGGAGGTGGTAGAGGACG
AGGGGGGACAGGAGAGGGGCTTATTCAACCTGAGGGAACGTATGGAAAGC
CTGCTCGGTTCTACCGGGCGGACGAGAGCCCTGTGCTGCAACGGCCGGAG
GAGGATTACGCTGGAATAGCAGGGCAGCAGCAGCAGCAGCAGGAGGGACA
TCAGCAGAGGCAGCAGCAGCAGCAGGTCTGGGGGCAGTCGCCAGAATTGA
TGATGGAGTCTCAATCGAAGTTGCTGGTTGAGGGGGAGGACGACGAGGTC
GTGCTTGTGGCAAGAGAGCCTGCAGAGATGCCTCATTTGCTAAGGCATCT
GTTGGACAATGTAGGTGGGGGAAGTCTGGGTTATGACGTGCCACTATTTT
CATCTCAAGGAGTTGACATGCTTGCGCCCTTCCCTTGCGAGCGGTCAGCA
GCAGCAGCAGCAGTGGCAGCAAAAGCAGGGGCAGCAGCGGAGGTAGGAGG
ACATGGAAGAGGGCCGGGTGAGCGTGCGGCGACTACGGCAGCTGGCAAGA
TGGCAGGGCTGTTTAGGCTGCACAAATGA

protein sequence of jgi.p|Nanoce1779_2|636048

>mRNA_739-protein ID=mRNA_739-protein|Name=jgi.p|Nanoce1779_2|636048|organism=Nannochloropsis oceanica|type=polypeptide|length=443bp
MDHQHHPQHQQPHHPTRSASPSQEVGIFIPDLRGFLRQLKRYWNALAVSS
SSSSPWARLPSYDDFEAFCLVALRAYMHANHGHTYIERGFTTDSFAKIEA
TVEAIRVPLYVYDMIREMARPMILSDHEHLLPYMPFLSMRATRGQGSVPG
LGFKCVRDPLVTVMLSGLLWGDQQPQQQPQQQQQQQQMMPIVKENPDLVK
CPASICNKSSLVVYGVHTLRDNQPSLPEWRVKACCILRHLQPSCPWYRSI
QLRAVTGGGEEGGGRGRGGTGEGLIQPEGTYGKPARFYRADESPVLQRPE
EDYAGIAGQQQQQQEGHQQRQQQQQVWGQSPELMMESQSKLLVEGEDDEV
VLVAREPAEMPHLLRHLLDNVGGGSLGYDVPLFSSQGVDMLAPFPCERSA
AAAAVAAKAGAAAEVGGHGRGPGERAATTAAGKMAGLFRLHK*

mRNA from alignment at scaffold_2:324374..325702+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_739 ID=mRNA_739|Name=jgi.p|Nanoce1779_2|636048|organism=Nannochloropsis oceanica|type=mRNA|length=1329bp|location=Sequence derived from alignment at scaffold_2:324374..325702+ (Nannochloropsis oceanica)
ATGGACCATCAGCATCACCCGCAGCATCAGCAACCCCACCACCCGACCAG
ATCTGCTTCACCCTCGCAGGAAGTAGGCATCTTTATCCCCGACCTCCGAG
GCTTTTTGCGTCAACTCAAGCGTTATTGGAATGCGCTTGCCGTCTCGTCC
TCCTCGTCGTCGCCCTGGGCCCGTCTACCAAGCTACGACGACTTTGAAGC
ATTTTGCCTGGTGGCCCTCCGCGCCTACATGCACGCAAATCACGGCCATA
CCTATATTGAGCGTGGTTTCACAACCGATTCCTTCGCCAAAATTGAAGCG
ACCGTGGAGGCCATCCGCGTCCCTCTTTACGTCTACGACATGATTCGCGA
GATGGCCCGCCCCATGATCCTCTCTGACCACGAACACCTCCTGCCGTACA
TGCCTTTCCTGAGCATGCGTGCCACACGCGGTCAAGGATCTGTGCCGGGC
TTGGGCTTCAAGTGTGTCCGGGATCCCCTCGTGACCGTCATGCTCTCGGG
ACTTTTATGGGGAGACCAGCAGCCGCAGCAGCAGCCGCAGCAGCAGCAGC
AGCAGCAGCAAATGATGCCAATCGTTAAAGAAAATCCAGATTTAGTCAAA
TGTCCCGCGTCTATCTGCAATAAATCATCCTTGGTGGTATACGGTGTGCA
TACTCTTAGAGACAATCAGCCTAGTCTCCCTGAATGGCGCGTGAAGGCTT
GCTGCATCTTGCGTCATCTCCAACCATCCTGTCCGTGGTACCGAAGCATT
CAACTACGAGCTGTGACTGGAGGAGGGGAAGAAGGAGGTGGTAGAGGACG
AGGGGGGACAGGAGAGGGGCTTATTCAACCTGAGGGAACGTATGGAAAGC
CTGCTCGGTTCTACCGGGCGGACGAGAGCCCTGTGCTGCAACGGCCGGAG
GAGGATTACGCTGGAATAGCAGGGCAGCAGCAGCAGCAGCAGGAGGGACA
TCAGCAGAGGCAGCAGCAGCAGCAGGTCTGGGGGCAGTCGCCAGAATTGA
TGATGGAGTCTCAATCGAAGTTGCTGGTTGAGGGGGAGGACGACGAGGTC
GTGCTTGTGGCAAGAGAGCCTGCAGAGATGCCTCATTTGCTAAGGCATCT
GTTGGACAATGTAGGTGGGGGAAGTCTGGGTTATGACGTGCCACTATTTT
CATCTCAAGGAGTTGACATGCTTGCGCCCTTCCCTTGCGAGCGGTCAGCA
GCAGCAGCAGCAGTGGCAGCAAAAGCAGGGGCAGCAGCGGAGGTAGGAGG
ACATGGAAGAGGGCCGGGTGAGCGTGCGGCGACTACGGCAGCTGGCAAGA
TGGCAGGGCTGTTTAGGCTGCACAAATGA

Coding sequence (CDS) from alignment at scaffold_2:324374..325702+

>mRNA_739 ID=mRNA_739|Name=jgi.p|Nanoce1779_2|636048|organism=Nannochloropsis oceanica|type=CDS|length=1329bp|location=Sequence derived from alignment at scaffold_2:324374..325702+ (Nannochloropsis oceanica)
ATGGACCATCAGCATCACCCGCAGCATCAGCAACCCCACCACCCGACCAG
ATCTGCTTCACCCTCGCAGGAAGTAGGCATCTTTATCCCCGACCTCCGAG
GCTTTTTGCGTCAACTCAAGCGTTATTGGAATGCGCTTGCCGTCTCGTCC
TCCTCGTCGTCGCCCTGGGCCCGTCTACCAAGCTACGACGACTTTGAAGC
ATTTTGCCTGGTGGCCCTCCGCGCCTACATGCACGCAAATCACGGCCATA
CCTATATTGAGCGTGGTTTCACAACCGATTCCTTCGCCAAAATTGAAGCG
ACCGTGGAGGCCATCCGCGTCCCTCTTTACGTCTACGACATGATTCGCGA
GATGGCCCGCCCCATGATCCTCTCTGACCACGAACACCTCCTGCCGTACA
TGCCTTTCCTGAGCATGCGTGCCACACGCGGTCAAGGATCTGTGCCGGGC
TTGGGCTTCAAGTGTGTCCGGGATCCCCTCGTGACCGTCATGCTCTCGGG
ACTTTTATGGGGAGACCAGCAGCCGCAGCAGCAGCCGCAGCAGCAGCAGC
AGCAGCAGCAAATGATGCCAATCGTTAAAGAAAATCCAGATTTAGTCAAA
TGTCCCGCGTCTATCTGCAATAAATCATCCTTGGTGGTATACGGTGTGCA
TACTCTTAGAGACAATCAGCCTAGTCTCCCTGAATGGCGCGTGAAGGCTT
GCTGCATCTTGCGTCATCTCCAACCATCCTGTCCGTGGTACCGAAGCATT
CAACTACGAGCTGTGACTGGAGGAGGGGAAGAAGGAGGTGGTAGAGGACG
AGGGGGGACAGGAGAGGGGCTTATTCAACCTGAGGGAACGTATGGAAAGC
CTGCTCGGTTCTACCGGGCGGACGAGAGCCCTGTGCTGCAACGGCCGGAG
GAGGATTACGCTGGAATAGCAGGGCAGCAGCAGCAGCAGCAGGAGGGACA
TCAGCAGAGGCAGCAGCAGCAGCAGGTCTGGGGGCAGTCGCCAGAATTGA
TGATGGAGTCTCAATCGAAGTTGCTGGTTGAGGGGGAGGACGACGAGGTC
GTGCTTGTGGCAAGAGAGCCTGCAGAGATGCCTCATTTGCTAAGGCATCT
GTTGGACAATGTAGGTGGGGGAAGTCTGGGTTATGACGTGCCACTATTTT
CATCTCAAGGAGTTGACATGCTTGCGCCCTTCCCTTGCGAGCGGTCAGCA
GCAGCAGCAGCAGTGGCAGCAAAAGCAGGGGCAGCAGCGGAGGTAGGAGG
ACATGGAAGAGGGCCGGGTGAGCGTGCGGCGACTACGGCAGCTGGCAAGA
TGGCAGGGCTGTTTAGGCTGCACAAATGA

Synonyms

Publications