jgi.p|Nanoce1779_2|573956, mRNA_737 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573956
Unique NamemRNA_737
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length816
Alignment locationscaffold_2:320882..321697 +

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Properties
Property NameValue
TranscriptId574042
TrackFilteredModels2
ProteinId573956
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:320882..321697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573956gene_737Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573956mRNA_737-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_737CDS_737Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_737 ID=mRNA_737|Name=jgi.p|Nanoce1779_2|573956|organism=Nannochloropsis oceanica|type=mRNA|length=816bp
TTGTGTGTCTTCATCGGTTGGGGGAGCAAGGGTGGGGGAGGTCACCCACA
GACCCACCGCGCCTCGAGGATGCAGTCAAGGCATCCTTTCCTCTAGATCC
TCTACTGCAGCAGTTGCTGTGTACTGTCTCTCAGGATATACTATCTGCAT
AAACATAAAACACGCAACACGCAACACAGGCTTTCAAGCCCCACTCTCCA
AGCCAGCATCAACATGCCGTCGTCCTCAACGTCCTCGTCGATCTGCCTCC
TGCTAGGCTTGCTACTGGTCTCCGTCCAAGGTTTCTTCTTCACCCCGACA
CGTTTATCCTTGGGTATGACACAATTGTCCTCCCTCCCTGCAGCTGCCAC
CGTCGTCCCCGGGCGGCTGCCCCTCTCCTTGCTGTACATGAGCCAGACAA
TGAACGAGGAGCCCTTGATCTTGACAGAGGAAAATGCAGCCATGGTGCTG
CAGCAAGCTCGGGAGGAGCTTAGCACGATGTTTGGGTATTTGGATGAGAA
TAAGGCGGTTGGGATCACGGGGGAAGTGGATTTGGTGGCCGTGGAAGGTA
TAAGCATCATTGTTCGCCTGAGGAATCGATTTTGGCATGATAAAAGGATG
GTGTTGGCGCGTGTGAGTAAGTACATGACGGACCGCATTCCTGAGGCGAT
GGTGGAGATCGAGGACGAGAGGCAATTGGAGGGGGATGATGCCAAGAGTG
TCTCAGATTTTTATAAGCACTAATTGAATGGGGAGGGGAGGGAGGCAAGG
AATGGAGGAGGGGAGGGGAGAAAAATGAAAAGCACACCACGTAGTAGAGG
GAAAGGTAAGTTTGTG
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protein sequence of jgi.p|Nanoce1779_2|573956

>mRNA_737-protein ID=mRNA_737-protein|Name=jgi.p|Nanoce1779_2|573956|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MPSSSTSSSICLLLGLLLVSVQGFFFTPTRLSLGMTQLSSLPAAATVVPG
RLPLSLLYMSQTMNEEPLILTEENAAMVLQQAREELSTMFGYLDENKAVG
ITGEVDLVAVEGISIIVRLRNRFWHDKRMVLARVSKYMTDRIPEAMVEIE
DERQLEGDDAKSVSDFYKH*
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mRNA from alignment at scaffold_2:320882..321697+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_737 ID=mRNA_737|Name=jgi.p|Nanoce1779_2|573956|organism=Nannochloropsis oceanica|type=mRNA|length=816bp|location=Sequence derived from alignment at scaffold_2:320882..321697+ (Nannochloropsis oceanica)
TTGTGTGTCTTCATCGGTTGGGGGAGCAAGGGTGGGGGAGGTCACCCACA
GACCCACCGCGCCTCGAGGATGCAGTCAAGGCATCCTTTCCTCTAGATCC
TCTACTGCAGCAGTTGCTGTGTACTGTCTCTCAGGATATACTATCTGCAT
AAACATAAAACACGCAACACGCAACACAGGCTTTCAAGCCCCACTCTCCA
AGCCAGCATCAACATGCCGTCGTCCTCAACGTCCTCGTCGATCTGCCTCC
TGCTAGGCTTGCTACTGGTCTCCGTCCAAGGTTTCTTCTTCACCCCGACA
CGTTTATCCTTGGGTATGACACAATTGTCCTCCCTCCCTGCAGCTGCCAC
CGTCGTCCCCGGGCGGCTGCCCCTCTCCTTGCTGTACATGAGCCAGACAA
TGAACGAGGAGCCCTTGATCTTGACAGAGGAAAATGCAGCCATGGTGCTG
CAGCAAGCTCGGGAGGAGCTTAGCACGATGTTTGGGTATTTGGATGAGAA
TAAGGCGGTTGGGATCACGGGGGAAGTGGATTTGGTGGCCGTGGAAGGTA
TAAGCATCATTGTTCGCCTGAGGAATCGATTTTGGCATGATAAAAGGATG
GTGTTGGCGCGTGTGAGTAAGTACATGACGGACCGCATTCCTGAGGCGAT
GGTGGAGATCGAGGACGAGAGGCAATTGGAGGGGGATGATGCCAAGAGTG
TCTCAGATTTTTATAAGCACTAATTGAATGGGGAGGGGAGGGAGGCAAGG
AATGGAGGAGGGGAGGGGAGAAAAATGAAAAGCACACCACGTAGTAGAGG
GAAAGGTAAGTTTGTG
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Coding sequence (CDS) from alignment at scaffold_2:320882..321697+

>mRNA_737 ID=mRNA_737|Name=jgi.p|Nanoce1779_2|573956|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_2:320882..321697+ (Nannochloropsis oceanica)
ATGCCGTCGTCCTCAACGTCCTCGTCGATCTGCCTCCTGCTAGGCTTGCT
ACTGGTCTCCGTCCAAGGTTTCTTCTTCACCCCGACACGTTTATCCTTGG
GTATGACACAATTGTCCTCCCTCCCTGCAGCTGCCACCGTCGTCCCCGGG
CGGCTGCCCCTCTCCTTGCTGTACATGAGCCAGACAATGAACGAGGAGCC
CTTGATCTTGACAGAGGAAAATGCAGCCATGGTGCTGCAGCAAGCTCGGG
AGGAGCTTAGCACGATGTTTGGGTATTTGGATGAGAATAAGGCGGTTGGG
ATCACGGGGGAAGTGGATTTGGTGGCCGTGGAAGGTATAAGCATCATTGT
TCGCCTGAGGAATCGATTTTGGCATGATAAAAGGATGGTGTTGGCGCGTG
TGAGTAAGTACATGACGGACCGCATTCCTGAGGCGATGGTGGAGATCGAG
GACGAGAGGCAATTGGAGGGGGATGATGCCAAGAGTGTCTCAGATTTTTA
TAAGCACTAA
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Synonyms
Publications