jgi.p|Nanoce1779_2|573951, mRNA_736 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573951
Unique NamemRNA_736
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1142
Alignment locationscaffold_2:319490..320631 -

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Properties
Property NameValue
TranscriptId574037
TrackFilteredModels2
ProteinId573951
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:319490..320631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573951gene_736Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573951mRNA_736-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_736CDS_736Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_736 ID=mRNA_736|Name=jgi.p|Nanoce1779_2|573951|organism=Nannochloropsis oceanica|type=mRNA|length=1142bp
ACAGCTATCGGCGCTGGTGTGGTAGCCGCGTCGTTGTTTGCCGGCCCACT
GCGTGAAATTTACCTCTACGTCCCCCCTTTAACGGCCGCCGTCGCAGGCT
TTTCGGTCCTCCCACATGGCGGGCTGGCGCAACGAGTCATACTGGCCACC
ATGGGCGGCATGAGCGCCAGCGCTTTTGGATATCATCAATCAAGACGAAA
GCTTCCGGCTTGTCCGTTGCTGCCTCCTGGCGAAAAAGAGCTGGCGTTAG
TGACGGGGGCATCAAGCGGCATCGGGCGTGAAATCAGTCTTGAGCTCGCC
AAGAAAGGGTTCGGCCTTGTCCTTGTCGCTCGCCGCGCCGACAAGCTTAA
TGAGTTAGCGGCAGACATTCAAATGACCAGTGAACCGACTTTACAAAATA
AAATACCCGTTCATATCGTGTCTGCAGACTTGACCAAGCCTGACGCTGCC
CAGCACCTATTCAATACAGTAGTACTCGAGAAAGGACTGAGGGTCACTGC
TCTCATCAATAACGCCGGCCTCGGACACACCGAATCTTTCATTAACATGT
CCATCTCAAAAATTGAAGAGATTATTCATCTGAACACCTTGGCTCTCACG
ACTCTTACACGTCTCTTCGGGTCAGAAATGGCGAAGCGAGGCCGAGGACG
CATCATGTCAGTCTCATCGATCGCAGGCGCTGCTCCTGGCCCGCTCGTTG
CCGTTTACAGCGCTACAAAGGCATTCGTCACTTCTTTTACATTGGCGATT
CAACATGAACTGGAACCCTTGGGGGTATCAATCACGAATTTGGTCCCTGG
GGCGACGTTTACGGAGTTTCAGGGGCGGGCAGAAGCGCATGCAGCGATGG
CGTTCTCGATGCCTGGCCTAGCGATGTCTGCTGATCGAGTGGCACGGGCA
GGGGTGAAAGGGATGCTACGAGGGGATAGTATCGTCATACCTGGAGTGGT
GAATCAGGGCTTTGTATTAGCGACGGCAATATTTCCCGCGAAGTTAATGA
GGATGGTTACCCAGATGGCCTGGAGCGAGATGCCGATGTTGGGACGGAAG
AAGGGAGGAATGGGAGGAGATGGGAGGAAGTGATAGGTATGAAATCAAAA
AGAGACATGGGGACAAAGTACGACGGTGCAGTGGCAATCCTG
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protein sequence of jgi.p|Nanoce1779_2|573951

>mRNA_736-protein ID=mRNA_736-protein|Name=jgi.p|Nanoce1779_2|573951|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MGGMSASAFGYHQSRRKLPACPLLPPGEKELALVTGASSGIGREISLELA
KKGFGLVLVARRADKLNELAADIQMTSEPTLQNKIPVHIVSADLTKPDAA
QHLFNTVVLEKGLRVTALINNAGLGHTESFINMSISKIEEIIHLNTLALT
TLTRLFGSEMAKRGRGRIMSVSSIAGAAPGPLVAVYSATKAFVTSFTLAI
QHELEPLGVSITNLVPGATFTEFQGRAEAHAAMAFSMPGLAMSADRVARA
GVKGMLRGDSIVIPGVVNQGFVLATAIFPAKLMRMVTQMAWSEMPMLGRK
KGGMGGDGRK*
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mRNA from alignment at scaffold_2:319490..320631-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_736 ID=mRNA_736|Name=jgi.p|Nanoce1779_2|573951|organism=Nannochloropsis oceanica|type=mRNA|length=1142bp|location=Sequence derived from alignment at scaffold_2:319490..320631- (Nannochloropsis oceanica)
ACAGCTATCGGCGCTGGTGTGGTAGCCGCGTCGTTGTTTGCCGGCCCACT
GCGTGAAATTTACCTCTACGTCCCCCCTTTAACGGCCGCCGTCGCAGGCT
TTTCGGTCCTCCCACATGGCGGGCTGGCGCAACGAGTCATACTGGCCACC
ATGGGCGGCATGAGCGCCAGCGCTTTTGGATATCATCAATCAAGACGAAA
GCTTCCGGCTTGTCCGTTGCTGCCTCCTGGCGAAAAAGAGCTGGCGTTAG
TGACGGGGGCATCAAGCGGCATCGGGCGTGAAATCAGTCTTGAGCTCGCC
AAGAAAGGGTTCGGCCTTGTCCTTGTCGCTCGCCGCGCCGACAAGCTTAA
TGAGTTAGCGGCAGACATTCAAATGACCAGTGAACCGACTTTACAAAATA
AAATACCCGTTCATATCGTGTCTGCAGACTTGACCAAGCCTGACGCTGCC
CAGCACCTATTCAATACAGTAGTACTCGAGAAAGGACTGAGGGTCACTGC
TCTCATCAATAACGCCGGCCTCGGACACACCGAATCTTTCATTAACATGT
CCATCTCAAAAATTGAAGAGATTATTCATCTGAACACCTTGGCTCTCACG
ACTCTTACACGTCTCTTCGGGTCAGAAATGGCGAAGCGAGGCCGAGGACG
CATCATGTCAGTCTCATCGATCGCAGGCGCTGCTCCTGGCCCGCTCGTTG
CCGTTTACAGCGCTACAAAGGCATTCGTCACTTCTTTTACATTGGCGATT
CAACATGAACTGGAACCCTTGGGGGTATCAATCACGAATTTGGTCCCTGG
GGCGACGTTTACGGAGTTTCAGGGGCGGGCAGAAGCGCATGCAGCGATGG
CGTTCTCGATGCCTGGCCTAGCGATGTCTGCTGATCGAGTGGCACGGGCA
GGGGTGAAAGGGATGCTACGAGGGGATAGTATCGTCATACCTGGAGTGGT
GAATCAGGGCTTTGTATTAGCGACGGCAATATTTCCCGCGAAGTTAATGA
GGATGGTTACCCAGATGGCCTGGAGCGAGATGCCGATGTTGGGACGGAAG
AAGGGAGGAATGGGAGGAGATGGGAGGAAGTGATAGGTATGAAATCAAAA
AGAGACATGGGGACAAAGTACGACGGTGCAGTGGCAATCCTG
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Coding sequence (CDS) from alignment at scaffold_2:319490..320631-

>mRNA_736 ID=mRNA_736|Name=jgi.p|Nanoce1779_2|573951|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at scaffold_2:319490..320631- (Nannochloropsis oceanica)
ATGGGCGGCATGAGCGCCAGCGCTTTTGGATATCATCAATCAAGACGAAA
GCTTCCGGCTTGTCCGTTGCTGCCTCCTGGCGAAAAAGAGCTGGCGTTAG
TGACGGGGGCATCAAGCGGCATCGGGCGTGAAATCAGTCTTGAGCTCGCC
AAGAAAGGGTTCGGCCTTGTCCTTGTCGCTCGCCGCGCCGACAAGCTTAA
TGAGTTAGCGGCAGACATTCAAATGACCAGTGAACCGACTTTACAAAATA
AAATACCCGTTCATATCGTGTCTGCAGACTTGACCAAGCCTGACGCTGCC
CAGCACCTATTCAATACAGTAGTACTCGAGAAAGGACTGAGGGTCACTGC
TCTCATCAATAACGCCGGCCTCGGACACACCGAATCTTTCATTAACATGT
CCATCTCAAAAATTGAAGAGATTATTCATCTGAACACCTTGGCTCTCACG
ACTCTTACACGTCTCTTCGGGTCAGAAATGGCGAAGCGAGGCCGAGGACG
CATCATGTCAGTCTCATCGATCGCAGGCGCTGCTCCTGGCCCGCTCGTTG
CCGTTTACAGCGCTACAAAGGCATTCGTCACTTCTTTTACATTGGCGATT
CAACATGAACTGGAACCCTTGGGGGTATCAATCACGAATTTGGTCCCTGG
GGCGACGTTTACGGAGTTTCAGGGGCGGGCAGAAGCGCATGCAGCGATGG
CGTTCTCGATGCCTGGCCTAGCGATGTCTGCTGATCGAGTGGCACGGGCA
GGGGTGAAAGGGATGCTACGAGGGGATAGTATCGTCATACCTGGAGTGGT
GAATCAGGGCTTTGTATTAGCGACGGCAATATTTCCCGCGAAGTTAATGA
GGATGGTTACCCAGATGGCCTGGAGCGAGATGCCGATGTTGGGACGGAAG
AAGGGAGGAATGGGAGGAGATGGGAGGAAGTGA
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Synonyms
Publications