jgi.p|Nanoce1779_2|573948, mRNA_734 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573948
Unique Name	mRNA_734
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1738
Alignment location	scaffold_2:313779..315516 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574034
Track	FilteredModels2
ProteinId	573948

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:313779..315516 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573948	gene_734	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573948	mRNA_734-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_734	CDS_734	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:313779..315516-
coding sequence from alignment at scaffold_2:313779..315516-

mRNA sequence

>mRNA_734 ID=mRNA_734|Name=jgi.p|Nanoce1779_2|573948|organism=Nannochloropsis oceanica|type=mRNA|length=1738bp
CCTACAAGATGACGCAAAATGATGCGGTGCCTATGCTCCAAGTAAATGTC
GCACGCCCGTGGAAAGTGGGGGGGAGGGGGGGGAACGGAAGGGAAGGGGA
GGGGGTCAACTCTCCCGCTCAAGCCTGGTTAAACAGAGCTGGCACTGTTT
TGAGAAAGACAAAAATTCACCGAAGCGCCCGGGCCGGCAAGACGTGTCCC
TTTCGTTTGAGTATCTCTTTCTTGTATTATCATATCGCTGCAGAGGTAAA
TCAAAGGAAAGGAAATAGTATGCGAATCCAGACGAGCGATGGATGAGGCT
GAAGTTTGCTTCTGCTGGTACCATCGTATCATGCATGGAAGCTTCGCTCA
ATTGGACCGAGAGACGGTAAACAACATCGGTAAACCATGTTCTTCGGATT
CACTCGCCTATGGCCCAGCTCCCCGCTTGCTATGTACATCGAGTTGAACC
GTGAGGCTTCCCTTTCGACAGGACAATTACTATCTCTCTGCTGGCTCGGC
TTGATTCCTTTTGTAGGCGCAGGCACATTTTACGTTGACACCACTTTTTG
CACTCCTGTCTTAAATGGTTCGTGTCCCGCTGGTGCAGACTTGTTGATGG
TGGAGTGAGGAGTAACCCTTTAGGCGTTAAGAAAAAGAGACGAAAGAAGG
CAAGAATTCATTAAACTTTACCTTGCTGCTTCGTTTGTTTTTAATGCTCT
TTCGTGGCTCCTTTCCTGACTCACCCTGACCTCCCCATTTACCACACTTG
CACAGCCACACTTGTGCGACAACACGCCTTCACTAATGTCTCGCACAGAT
GCCGCTATCTTTTCGCCCTATGCATATACAGACAAGATAGCTGCCATCCA
TCCTTCATGTTACAATACACACAAACCCCGAATTTCCACGCCACATTCTC
TCCACAACTTTCACATAGGTGGCTTAATATGCCTGTCATCCACATGGCTT
TACGGCTTAACCCGAGGACTCTGTGCTTGTGTCGAGGCGCAAATCTTCTT
TTTTTTCTTTCTCCCGATCTATTGCCCCCTCTTCTCGCCTATTCTATGCC
CCACTCGTGCTGGGAAAAGGAATGAGATCTGGACATGACAGCCAAGACAA
GCTGCCTCGGGACCTGGAGTCCGCTGAGTTGCCGCTTGTTCCCGCACACC
TACCCGGGAGGAATTGTGAGCCGAGCTCCTAAGCGCTCTCAATAAGTGCA
CTCGACGAGAGCAGAGCGGCATGCTCTCCCAGTGATGAACAAACGACAAC
GAAGAGATCGAAACAAAAGAACAGAGCACATCGGTCGACACACGTGACCT
TGGCACGCCGCCCTCTTCCAACGCTGCGATGGCTCCAGGGCATGATTGCG
TAGTTGCGAGCTCAGATGAATGGAAGGGTGAGCGTAAAGTAAACGGGGGG
CGAAATGGGAAGGTCGGTGTCTTTAGCCGCAGGACTTTGCACCGTCGAGC
CCGTTTTTTTCGAAGTCATCGCTGAACCCCATGTCGCTTCCCAGCTATGA
AATTGCCTCCTGGGAGCAAAGCCCGCTCCGTTGTGATGTGAGCTGCGATT
GGGTGCGGATCGAAAGCCCTCTGGTGAACGTGTGAGCCTTTTTTGAAACC
CTCAACACTCGACACCCACATCATCATCAACCTACTGTCGCTCCCCTCTC
CATGCACTCGATATAGGACGCCCCAGTATCCCTTTGGCCTCACTTGGAGA
GGCGGGAGGAGTTACAACATACCATAAGTCACCAGGGC

protein sequence of jgi.p|Nanoce1779_2|573948

>mRNA_734-protein ID=mRNA_734-protein|Name=jgi.p|Nanoce1779_2|573948|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MSRTDAAIFSPYAYTDKIAAIHPSCYNTHKPRISTPHSLHNFHIGGLICL
SSTWLYGLTRGLCACVEAQIFFFFFLPIYCPLFSPILCPTRAGKRNEIWT
*

mRNA from alignment at scaffold_2:313779..315516-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_734 ID=mRNA_734|Name=jgi.p|Nanoce1779_2|573948|organism=Nannochloropsis oceanica|type=mRNA|length=1738bp|location=Sequence derived from alignment at scaffold_2:313779..315516- (Nannochloropsis oceanica)
CCTACAAGATGACGCAAAATGATGCGGTGCCTATGCTCCAAGTAAATGTC
GCACGCCCGTGGAAAGTGGGGGGGAGGGGGGGGAACGGAAGGGAAGGGGA
GGGGGTCAACTCTCCCGCTCAAGCCTGGTTAAACAGAGCTGGCACTGTTT
TGAGAAAGACAAAAATTCACCGAAGCGCCCGGGCCGGCAAGACGTGTCCC
TTTCGTTTGAGTATCTCTTTCTTGTATTATCATATCGCTGCAGAGGTAAA
TCAAAGGAAAGGAAATAGTATGCGAATCCAGACGAGCGATGGATGAGGCT
GAAGTTTGCTTCTGCTGGTACCATCGTATCATGCATGGAAGCTTCGCTCA
ATTGGACCGAGAGACGGTAAACAACATCGGTAAACCATGTTCTTCGGATT
CACTCGCCTATGGCCCAGCTCCCCGCTTGCTATGTACATCGAGTTGAACC
GTGAGGCTTCCCTTTCGACAGGACAATTACTATCTCTCTGCTGGCTCGGC
TTGATTCCTTTTGTAGGCGCAGGCACATTTTACGTTGACACCACTTTTTG
CACTCCTGTCTTAAATGGTTCGTGTCCCGCTGGTGCAGACTTGTTGATGG
TGGAGTGAGGAGTAACCCTTTAGGCGTTAAGAAAAAGAGACGAAAGAAGG
CAAGAATTCATTAAACTTTACCTTGCTGCTTCGTTTGTTTTTAATGCTCT
TTCGTGGCTCCTTTCCTGACTCACCCTGACCTCCCCATTTACCACACTTG
CACAGCCACACTTGTGCGACAACACGCCTTCACTAATGTCTCGCACAGAT
GCCGCTATCTTTTCGCCCTATGCATATACAGACAAGATAGCTGCCATCCA
TCCTTCATGTTACAATACACACAAACCCCGAATTTCCACGCCACATTCTC
TCCACAACTTTCACATAGGTGGCTTAATATGCCTGTCATCCACATGGCTT
TACGGCTTAACCCGAGGACTCTGTGCTTGTGTCGAGGCGCAAATCTTCTT
TTTTTTCTTTCTCCCGATCTATTGCCCCCTCTTCTCGCCTATTCTATGCC
CCACTCGTGCTGGGAAAAGGAATGAGATCTGGACATGACAGCCAAGACAA
GCTGCCTCGGGACCTGGAGTCCGCTGAGTTGCCGCTTGTTCCCGCACACC
TACCCGGGAGGAATTGTGAGCCGAGCTCCTAAGCGCTCTCAATAAGTGCA
CTCGACGAGAGCAGAGCGGCATGCTCTCCCAGTGATGAACAAACGACAAC
GAAGAGATCGAAACAAAAGAACAGAGCACATCGGTCGACACACGTGACCT
TGGCACGCCGCCCTCTTCCAACGCTGCGATGGCTCCAGGGCATGATTGCG
TAGTTGCGAGCTCAGATGAATGGAAGGGTGAGCGTAAAGTAAACGGGGGG
CGAAATGGGAAGGTCGGTGTCTTTAGCCGCAGGACTTTGCACCGTCGAGC
CCGTTTTTTTCGAAGTCATCGCTGAACCCCATGTCGCTTCCCAGCTATGA
AATTGCCTCCTGGGAGCAAAGCCCGCTCCGTTGTGATGTGAGCTGCGATT
GGGTGCGGATCGAAAGCCCTCTGGTGAACGTGTGAGCCTTTTTTGAAACC
CTCAACACTCGACACCCACATCATCATCAACCTACTGTCGCTCCCCTCTC
CATGCACTCGATATAGGACGCCCCAGTATCCCTTTGGCCTCACTTGGAGA
GGCGGGAGGAGTTACAACATACCATAAGTCACCAGGGC

Coding sequence (CDS) from alignment at scaffold_2:313779..315516-

>mRNA_734 ID=mRNA_734|Name=jgi.p|Nanoce1779_2|573948|organism=Nannochloropsis oceanica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_2:313779..315516- (Nannochloropsis oceanica)
ATGTCTCGCACAGATGCCGCTATCTTTTCGCCCTATGCATATACAGACAA
GATAGCTGCCATCCATCCTTCATGTTACAATACACACAAACCCCGAATTT
CCACGCCACATTCTCTCCACAACTTTCACATAGGTGGCTTAATATGCCTG
TCATCCACATGGCTTTACGGCTTAACCCGAGGACTCTGTGCTTGTGTCGA
GGCGCAAATCTTCTTTTTTTTCTTTCTCCCGATCTATTGCCCCCTCTTCT
CGCCTATTCTATGCCCCACTCGTGCTGGGAAAAGGAATGAGATCTGGACA
TGA

Synonyms

Publications