jgi.p|Nanoce1779_2|622302, mRNA_733 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|622302
Unique NamemRNA_733
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length351
Alignment locationscaffold_2:312243..312616 -

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Properties
Property NameValue
TranscriptId622388
TrackFilteredModels2
ProteinId622302
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:312243..312616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622302gene_733Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622302mRNA_733-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_733CDS_733Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_733 ID=mRNA_733|Name=jgi.p|Nanoce1779_2|622302|organism=Nannochloropsis oceanica|type=mRNA|length=351bp
ATGCATATGGGTCTGGTGACGAAGACCGTTGCGGGAATGATCTTGGGTTT
TGCGAGGAGGGTGTTGAAGAACTTGCATTACTCCTTTGGGGATAAGGCTG
GGGGGGGTCAGGACGCGGATGAGGTGGAGCTGCCACATTTGACATTTCCG
TTGAGCCGAGGGATGGATCGGTTGGTCATAACACCCGTGGGAGGGAAGAT
CCCTCCCCTTGGGAAGGAGTTTTTTGAGCCGGACGAGGTGAGAATACCGA
GGAGGGGGAAAGGGGAGGAGCCGCAGTTTGTGCTAGGCCCGACGTACTCG
ATGAGTTTTCACATGGCAGCTGGTGAACATAGCGGGACAGAAGTCGATTG
A
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protein sequence of jgi.p|Nanoce1779_2|622302

>mRNA_733-protein ID=mRNA_733-protein|Name=jgi.p|Nanoce1779_2|622302|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MHMGLVTKTVAGMILGFARRVLKNLHYSFGDKAGGGQDADEVELPHLTFP
LSRGMDRLVITPVGGKIPPLGKEFFEPDEVRIPRRGKGEEPQFVLGPTYS
MSFHMAAGEHSGTEVD*
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mRNA from alignment at scaffold_2:312243..312616-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_733 ID=mRNA_733|Name=jgi.p|Nanoce1779_2|622302|organism=Nannochloropsis oceanica|type=mRNA|length=374bp|location=Sequence derived from alignment at scaffold_2:312243..312616- (Nannochloropsis oceanica)
ATGCATATGGGTCTGGTGACGAAGACCGTTGCGGGAATGATCTTGGGTTT
TGCGAGGAGGGTGTTGAAGAACTTGCATTACTCCTTTGGGGATAAGGCTG
GGGGGGGTCAGGACGCGGATGAGGTGGAGCTGCCACATTTGACATTTCCG
TTGAGCCGAGGGATGGATCGGTTGGTCATAACACCCGTGGGAGGGAAGAT
CCCTCCCCTTGGGAAGGAGTTTTTTGAGCCGGACGAGGTGAGAATACCGA
GGAGGGGGAAAGGGGAGGAGCCGCAGTTTGTGCTAGGCCCGACGTACTCG
ATGAGTTTTCACAGTATGTATATGGACTTCGCCCAGTGGCAGCTGGTGAA
CATAGCGGGACAGAAGTCGATTGA
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Coding sequence (CDS) from alignment at scaffold_2:312243..312616-

>mRNA_733 ID=mRNA_733|Name=jgi.p|Nanoce1779_2|622302|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_2:312243..312616- (Nannochloropsis oceanica)
TGGCAGCTGGTGAACATAGCGGGACAGAAGTCGATTGAATGCATATGGGT
CTGGTGACGAAGACCGTTGCGGGAATGATCTTGGGTTTTGCGAGGAGGGT
GTTGAAGAACTTGCATTACTCCTTTGGGGATAAGGCTGGGGGGGGTCAGG
ACGCGGATGAGGTGGAGCTGCCACATTTGACATTTCCGTTGAGCCGAGGG
ATGGATCGGTTGGTCATAACACCCGTGGGAGGGAAGATCCCTCCCCTTGG
GAAGGAGTTTTTTGAGCCGGACGAGGTGAGAATACCGAGGAGGGGGAAAG
GGGAGGAGCCGCAGTTTGTGCTAGGCCCGACGTACTCGATGAGTTTTCAC
ATGGCAGCTGGTGAACATAGCGGGACAGAAGTCGATTGAATGCATATGGG
TCTGGTGACGAAGACCGTTGCGGGAATGATCTTGGGTTTTGCGAGGAGGG
TGTTGAAGAACTTGCATTACTCCTTTGGGGATAAGGCTGGGGGGGGTCAG
GACGCGGATGAGGTGGAGCTGCCACATTTGACATTTCCGTTGAGCCGAGG
GATGGATCGGTTGGTCATAACACCCGTGGGAGGGAAGATCCCTCCCCTTG
GGAAGGAGTTTTTTGAGCCGGACGAGGTGAGAATACCGAGGAGGGGGAAA
GGGGAGGAGCCGCAGTTTGTGCTAGGCCCGACGTACTCGATGAGTTTTCA
CA
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Synonyms
Publications