jgi.p|Nanoce1779_2|573942, mRNA_731 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573942
Unique NamemRNA_731
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1039
Alignment locationscaffold_2:307031..308069 +

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Properties
Property NameValue
TranscriptId574028
TrackFilteredModels2
ProteinId573942
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:307031..308069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573942gene_731Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573942mRNA_731-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_731CDS_731Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_731 ID=mRNA_731|Name=jgi.p|Nanoce1779_2|573942|organism=Nannochloropsis oceanica|type=mRNA|length=1039bp
CCCTTCGTCACGGACCATGCCTCTCGGCGATCAACCTCAAATTCATGTGA
AGAGGGCAGCGCGTCGGGGTCGCCATCGCAACGCTCGGTAAGTGGTCTGA
TGAGTATACAACGTGTGAATGTATTTGTTCTTGGGAAAAGGACATTGCGC
TCCACGGCCCCACTTCCAATTTCTGCTCCCACACTCCACAGTCGACGAGC
TGGACCAGGGCATCATCCTGCAGTCCTTGTTCACGAGAATCAGCTCTACT
CCCGCGGGCCCGAACTGCCAATGCCTTGTGTTGGTGGAGCCGCGAGACTC
GACGAATACCTGCGTGCGGCAGACGATCGTCAGGAGCGACAACCGGACGG
ATGACAAGCATCTGTGCGACGTTATCCATGGCCGCGACCTTCGCCAAGGG
CTCCCTGTCAACCTCATCCTTGACAAGCGCTTTGTGGGTCTGTGTGACGC
GCTCGCGGTGAGGCGCCTGTTCGACGCCGTGTCGCTGTCGGGCTTCTCCC
TCCCGTTCGGCGACCGGCGGAAGCGGAAGCGGCACCTGCGTGCAACAGAG
CAGGAGGATGTGGTGGATACGCCGCGTTGCGACACCTATCCGAAAGCTAT
TTCTAAGAGCAGTTCGTGTCCTCCCACACGGACTCCCCCTTCGAGGGCAA
AAAGTGTTCGTAAAAAAAGCTTATTGACGGGCAGTCGCAGCGCGGCGCCT
CCTTCCCATCCTCCTGCTCCGCTGTGCGGCTCTCCTCGAACGTCTCCACA
CACTCCTCATGGTCATAAGCCTGCTCGGGTTTCCCTTCACGACGTTGTTC
TCATCGTCGAGAGACAGGAAGATCATGTAATCACGACTATTCGAAGGCAA
AGGCTGCAGAAACTGCCGCTGCGCCGCTTTCTTGGTGATCAACGGGAAGG
CGCCAGAAACGGAGGGTTTGTGACGGTGTGGGAGGGACGACGATGTTGAA
GGCAAGCCGCAGGCACTGCGTCAAGCAAGTCCCGGTCTTGAAGCCTCCTC
TTCACAACAATGAAAGCAAAAAGCCAAGTCACGGTCCAA
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protein sequence of jgi.p|Nanoce1779_2|573942

>mRNA_731-protein ID=mRNA_731-protein|Name=jgi.p|Nanoce1779_2|573942|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MYLFLGKGHCAPRPHFQFLLPHSTVDELDQGIILQSLFTRISSTPAGPNC
QCLVLVEPRDSTNTCVRQTIVRSDNRTDDKHLCDVIHGRDLRQGLPVNLI
LDKRFVGLCDALAVRRLFDAVSLSGFSLPFGDRRKRKRHLRATEQEDVVD
TPRCDTYPKAISKSSSCPPTRTPPSRAKSVRKKSLLTGSRSAAPPSHPPA
PLCGSPRTSPHTPHGHKPARVSLHDVVLIVERQEDHVITTIRRQRLQKLP
LRRFLGDQREGARNGGFVTVWEGRRC*
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mRNA from alignment at scaffold_2:307031..308069+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_731 ID=mRNA_731|Name=jgi.p|Nanoce1779_2|573942|organism=Nannochloropsis oceanica|type=mRNA|length=1039bp|location=Sequence derived from alignment at scaffold_2:307031..308069+ (Nannochloropsis oceanica)
CCCTTCGTCACGGACCATGCCTCTCGGCGATCAACCTCAAATTCATGTGA
AGAGGGCAGCGCGTCGGGGTCGCCATCGCAACGCTCGGTAAGTGGTCTGA
TGAGTATACAACGTGTGAATGTATTTGTTCTTGGGAAAAGGACATTGCGC
TCCACGGCCCCACTTCCAATTTCTGCTCCCACACTCCACAGTCGACGAGC
TGGACCAGGGCATCATCCTGCAGTCCTTGTTCACGAGAATCAGCTCTACT
CCCGCGGGCCCGAACTGCCAATGCCTTGTGTTGGTGGAGCCGCGAGACTC
GACGAATACCTGCGTGCGGCAGACGATCGTCAGGAGCGACAACCGGACGG
ATGACAAGCATCTGTGCGACGTTATCCATGGCCGCGACCTTCGCCAAGGG
CTCCCTGTCAACCTCATCCTTGACAAGCGCTTTGTGGGTCTGTGTGACGC
GCTCGCGGTGAGGCGCCTGTTCGACGCCGTGTCGCTGTCGGGCTTCTCCC
TCCCGTTCGGCGACCGGCGGAAGCGGAAGCGGCACCTGCGTGCAACAGAG
CAGGAGGATGTGGTGGATACGCCGCGTTGCGACACCTATCCGAAAGCTAT
TTCTAAGAGCAGTTCGTGTCCTCCCACACGGACTCCCCCTTCGAGGGCAA
AAAGTGTTCGTAAAAAAAGCTTATTGACGGGCAGTCGCAGCGCGGCGCCT
CCTTCCCATCCTCCTGCTCCGCTGTGCGGCTCTCCTCGAACGTCTCCACA
CACTCCTCATGGTCATAAGCCTGCTCGGGTTTCCCTTCACGACGTTGTTC
TCATCGTCGAGAGACAGGAAGATCATGTAATCACGACTATTCGAAGGCAA
AGGCTGCAGAAACTGCCGCTGCGCCGCTTTCTTGGTGATCAACGGGAAGG
CGCCAGAAACGGAGGGTTTGTGACGGTGTGGGAGGGACGACGATGTTGAA
GGCAAGCCGCAGGCACTGCGTCAAGCAAGTCCCGGTCTTGAAGCCTCCTC
TTCACAACAATGAAAGCAAAAAGCCAAGTCACGGTCCAA
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Coding sequence (CDS) from alignment at scaffold_2:307031..308069+

>mRNA_731 ID=mRNA_731|Name=jgi.p|Nanoce1779_2|573942|organism=Nannochloropsis oceanica|type=CDS|length=831bp|location=Sequence derived from alignment at scaffold_2:307031..308069+ (Nannochloropsis oceanica)
ATGTATTTGTTCTTGGGAAAAGGACATTGCGCTCCACGGCCCCACTTCCA
ATTTCTGCTCCCACACTCCACAGTCGACGAGCTGGACCAGGGCATCATCC
TGCAGTCCTTGTTCACGAGAATCAGCTCTACTCCCGCGGGCCCGAACTGC
CAATGCCTTGTGTTGGTGGAGCCGCGAGACTCGACGAATACCTGCGTGCG
GCAGACGATCGTCAGGAGCGACAACCGGACGGATGACAAGCATCTGTGCG
ACGTTATCCATGGCCGCGACCTTCGCCAAGGGCTCCCTGTCAACCTCATC
CTTGACAAGCGCTTTGTGGGTCTGTGTGACGCGCTCGCGGTGAGGCGCCT
GTTCGACGCCGTGTCGCTGTCGGGCTTCTCCCTCCCGTTCGGCGACCGGC
GGAAGCGGAAGCGGCACCTGCGTGCAACAGAGCAGGAGGATGTGGTGGAT
ACGCCGCGTTGCGACACCTATCCGAAAGCTATTTCTAAGAGCAGTTCGTG
TCCTCCCACACGGACTCCCCCTTCGAGGGCAAAAAGTGTTCGTAAAAAAA
GCTTATTGACGGGCAGTCGCAGCGCGGCGCCTCCTTCCCATCCTCCTGCT
CCGCTGTGCGGCTCTCCTCGAACGTCTCCACACACTCCTCATGGTCATAA
GCCTGCTCGGGTTTCCCTTCACGACGTTGTTCTCATCGTCGAGAGACAGG
AAGATCATGTAATCACGACTATTCGAAGGCAAAGGCTGCAGAAACTGCCG
CTGCGCCGCTTTCTTGGTGATCAACGGGAAGGCGCCAGAAACGGAGGGTT
TGTGACGGTGTGGGAGGGACGACGATGTTGA
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Synonyms
Publications