jgi.p|Nanoce1779_2|522533, mRNA_730 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|522533
Unique NamemRNA_730
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length942
Alignment locationscaffold_2:304021..305265 -

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Properties
Property NameValue
TranscriptId522619
TrackFilteredModels2
ProteinId522533
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:304021..305265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522533gene_730Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522533mRNA_730-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_730CDS_730Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_730 ID=mRNA_730|Name=jgi.p|Nanoce1779_2|522533|organism=Nannochloropsis oceanica|type=mRNA|length=942bp
ATGCTCTCGAAGCTCCTCCTCCCCACGGGGGAGAAGGCTTGGCAACCGTC
CGACTTTGTCCCGGACCTGACCAAGGAAGGGTGGGAAGACGAGGTAAAGG
AATTCAGGGAAAAGGCGGAGACGTTGCCGGACGAGACGCTGGTGGTCTTG
GTGGGGGACATGGTGACTGAGGAGGCGTTGCCCACTTACCAGACGCTGTT
GAACACGTTCGAGGGCGTGGATGACCCCACCGGGACGAGTCCTTCGGCCT
GGTGCCGATGGACACGGGGGTGGACGAGCGAGGAGAACAGGCACGGGGAT
CTGCTCAACCGGTACTTGTACTTGACGGGGCGCGTGGACATGCGCGCGAT
CGAGTGCACGATTCAGCACCTGATTTCGAGCGGTTTCAACCCCAAAATCA
AGAAGGATCCGTACAAGGGTTTCGTATACACCTCCTTCCAAGAGCGAGCA
ACCAAGATCTCCCATCAGAATGTGGCGCGGCTGGCCAACAGCGCCGGTGA
TGGCAATCTGGGTCTGATCTGCAGTAAGATTGCAGGGGATGAGTCGAGGC
ACGAGAAGGCATACCAAGCCATCTTCCAGGAGATCCTCAAGAAGGACCCG
GAAGGGGGGTTGAAGAGCTTCTATGAGTTAATGAGTGATCAGATCACCAT
GCCTGCCGTGATGATGACGGACGGCCACGACCCGGACCTCTTCGAGCACT
TCTCGGTCACGGCGCAGAAGCTCGGTGTCTACACGGCAGTGGACTACGCC
AACATTCTGGAATATTTGGTGGAGACATGGGACATCGAGCACATGGGAGG
CCTGTCTTCTGAAGGGGCCAAGTACCAGGAGAAGCTCTGCAAGCTCGCGC
CCCGATACATGAGGCTTGCCGAGATGAGTCTTGACCGGGTGAAAAAGATG
CCCAAGACGCCTTATTCTTGGATCCATGGACGCGTGGCTTAA
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protein sequence of jgi.p|Nanoce1779_2|522533

>mRNA_730-protein ID=mRNA_730-protein|Name=jgi.p|Nanoce1779_2|522533|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MLSKLLLPTGEKAWQPSDFVPDLTKEGWEDEVKEFREKAETLPDETLVVL
VGDMVTEEALPTYQTLLNTFEGVDDPTGTSPSAWCRWTRGWTSEENRHGD
LLNRYLYLTGRVDMRAIECTIQHLISSGFNPKIKKDPYKGFVYTSFQERA
TKISHQNVARLANSAGDGNLGLICSKIAGDESRHEKAYQAIFQEILKKDP
EGGLKSFYELMSDQITMPAVMMTDGHDPDLFEHFSVTAQKLGVYTAVDYA
NILEYLVETWDIEHMGGLSSEGAKYQEKLCKLAPRYMRLAEMSLDRVKKM
PKTPYSWIHGRVA*
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mRNA from alignment at scaffold_2:304021..305265-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_730 ID=mRNA_730|Name=jgi.p|Nanoce1779_2|522533|organism=Nannochloropsis oceanica|type=mRNA|length=1245bp|location=Sequence derived from alignment at scaffold_2:304021..305265- (Nannochloropsis oceanica)
ATGCTCTCGAAGCTCCTCCTCCCCACGGGGGAGAAGGCTTGGCAACCGTC
CGACTTTGTCCCGGACCTGACCAAGGAAGGGTGGGAAGACGAGGTAAAGG
AATTCAGGGAAAAGGCGGAGACGTTGCCGGACGAGACGCTGGTGGTCTTG
GTGGGGGACATGGTGACTGAGGAGGCGTTGCCCACTTACCAGACGCTGTT
GAACACGTTCGAGGGCGTGGATGACCCCACCGGGACGAGTCCTTCGGCCT
GGTGCCGATGGACACGGGGGTGGACGAGCGAGGAGAACAGGCACGGGGAT
CTGCTCAACCGGTACTTGTACTTGACGGGGCGCGTGGACATGCGCGCGAT
CGAGTGCACGATTCAGCACCTGGTACGTGGGGATGGGAGGGAGGGAGAGA
GGGAGGGATGGAGGAAGGCTCCTGTTCTTGTGTTCCCCCCCTTCGTCTCG
CGCGATGTCTAACTCATTCTTCCCACCCTCCCTCCCTCTGCGTCCGTAAA
TTAGATTTCGAGCGGTTTCAACCCCAAAATCAAGAAGGATCCGTACAAGG
GTTTCGTATACACCTCCTTCCAAGAGCGAGCAACCAAGATCTCCCATCAG
AATGTGGCGCGGCTGGCCAACAGCGCCGGTGATGGCAATCTGGGTCTGAT
CTGCAGTAAGATTGCAGGGGATGAGTCGAGGCACGAGAAGGCATACCAAG
CCATCTTCCAGGAGATCCTCAAGAAGGACCCGGAAGGGGGGTTGAAGAGC
TTCTATGAGTTAATGAGTGATCAGGTAGGGAGGGCGGAGGAGAGGGAGGG
GGAAAGGGAGGGAGGTAGGTACGCATTAGGAGGCAGGAGGAAGGGAACGA
CACAAGTACTTTCACCATGGGCCAAGATACGGCTGTTTACCTTTCCCTCC
TCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCATCTCAGATCAC
CATGCCTGCCGTGATGATGACGGACGGCCACGACCCGGACCTCTTCGAGC
ACTTCTCGGTCACGGCGCAGAAGCTCGGTGTCTACACGGCAGTGGACTAC
GCCAACATTCTGGAATATTTGGTGGAGACATGGGACATCGAGCACATGGG
AGGCCTGTCTTCTGAAGGGGCCAAGTACCAGGAGAAGCTCTGCAAGCTCG
CGCCCCGATACATGAGGCTTGCCGAGATGAGTCTTGACCGGGTGAAAAAG
ATGCCCAAGACGCCTTATTCTTGGATCCATGGACGCGTGGCTTAA
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Coding sequence (CDS) from alignment at scaffold_2:304021..305265-

>mRNA_730 ID=mRNA_730|Name=jgi.p|Nanoce1779_2|522533|organism=Nannochloropsis oceanica|type=CDS|length=2826bp|location=Sequence derived from alignment at scaffold_2:304021..305265- (Nannochloropsis oceanica)
ATCACCATGCCTGCCGTGATGATGACGGACGGCCACGACCCGGACCTCTT
CGAGCACTTCTCGGTCACGGCGCAGAAGCTCGGTGTCTACACGGCAGTGG
ACTACGCCAACATTCTGGAATATTTGGTGGAGACATGGGACATCGAGCAC
ATGGGAGGCCTGTCTTCTGAAGGGGCCAAGTACCAGGAGAAGCTCTGCAA
GCTCGCGCCCCGATACATGAGGCTTGCCGAGATGAGTCTTGACCGGGTGA
AAAAGATGCCCAAGACGCCTTATTCTTGGATCCATGGACGCGTGGCTTAA
ATTTCGAGCGGTTTCAACCCCAAAATCAAGAAGGATCCGTACAAGGGTTT
CGTATACACCTCCTTCCAAGAGCGAGCAACCAAGATCTCCCATCAGAATG
TGGCGCGGCTGGCCAACAGCGCCGGTGATGGCAATCTGGGTCTGATCTGC
AGTAAGATTGCAGGGGATGAGTCGAGGCACGAGAAGGCATACCAAGCCAT
CTTCCAGGAGATCCTCAAGAAGGACCCGGAAGGGGGGTTGAAGAGCTTCT
ATGAGTTAATGAGTGATCAGATGCTCTCGAAGCTCCTCCTCCCCACGGGG
GAGAAGGCTTGGCAACCGTCCGACTTTGTCCCGGACCTGACCAAGGAAGG
GTGGGAAGACGAGGTAAAGGAATTCAGGGAAAAGGCGGAGACGTTGCCGG
ACGAGACGCTGGTGGTCTTGGTGGGGGACATGGTGACTGAGGAGGCGTTG
CCCACTTACCAGACGCTGTTGAACACGTTCGAGGGCGTGGATGACCCCAC
CGGGACGAGTCCTTCGGCCTGGTGCCGATGGACACGGGGGTGGACGAGCG
AGGAGAACAGGCACGGGGATCTGCTCAACCGGTACTTGTACTTGACGGGG
CGCGTGGACATGCGCGCGATCGAGTGCACGATTCAGCACCTGATCACCAT
GCCTGCCGTGATGATGACGGACGGCCACGACCCGGACCTCTTCGAGCACT
TCTCGGTCACGGCGCAGAAGCTCGGTGTCTACACGGCAGTGGACTACGCC
AACATTCTGGAATATTTGGTGGAGACATGGGACATCGAGCACATGGGAGG
CCTGTCTTCTGAAGGGGCCAAGTACCAGGAGAAGCTCTGCAAGCTCGCGC
CCCGATACATGAGGCTTGCCGAGATGAGTCTTGACCGGGTGAAAAAGATG
CCCAAGACGCCTTATTCTTGGATCCATGGACGCGTGGCTTAAATTTCGAG
CGGTTTCAACCCCAAAATCAAGAAGGATCCGTACAAGGGTTTCGTATACA
CCTCCTTCCAAGAGCGAGCAACCAAGATCTCCCATCAGAATGTGGCGCGG
CTGGCCAACAGCGCCGGTGATGGCAATCTGGGTCTGATCTGCAGTAAGAT
TGCAGGGGATGAGTCGAGGCACGAGAAGGCATACCAAGCCATCTTCCAGG
AGATCCTCAAGAAGGACCCGGAAGGGGGGTTGAAGAGCTTCTATGAGTTA
ATGAGTGATCAGATGCTCTCGAAGCTCCTCCTCCCCACGGGGGAGAAGGC
TTGGCAACCGTCCGACTTTGTCCCGGACCTGACCAAGGAAGGGTGGGAAG
ACGAGGTAAAGGAATTCAGGGAAAAGGCGGAGACGTTGCCGGACGAGACG
CTGGTGGTCTTGGTGGGGGACATGGTGACTGAGGAGGCGTTGCCCACTTA
CCAGACGCTGTTGAACACGTTCGAGGGCGTGGATGACCCCACCGGGACGA
GTCCTTCGGCCTGGTGCCGATGGACACGGGGGTGGACGAGCGAGGAGAAC
AGGCACGGGGATCTGCTCAACCGGTACTTGTACTTGACGGGGCGCGTGGA
CATGCGCGCGATCGAGTGCACGATTCAGCACCTGATCACCATGCCTGCCG
TGATGATGACGGACGGCCACGACCCGGACCTCTTCGAGCACTTCTCGGTC
ACGGCGCAGAAGCTCGGTGTCTACACGGCAGTGGACTACGCCAACATTCT
GGAATATTTGGTGGAGACATGGGACATCGAGCACATGGGAGGCCTGTCTT
CTGAAGGGGCCAAGTACCAGGAGAAGCTCTGCAAGCTCGCGCCCCGATAC
ATGAGGCTTGCCGAGATGAGTCTTGACCGGGTGAAAAAGATGCCCAAGAC
GCCTTATTCTTGGATCCATGGACGCGTGGCTTAAATTTCGAGCGGTTTCA
ACCCCAAAATCAAGAAGGATCCGTACAAGGGTTTCGTATACACCTCCTTC
CAAGAGCGAGCAACCAAGATCTCCCATCAGAATGTGGCGCGGCTGGCCAA
CAGCGCCGGTGATGGCAATCTGGGTCTGATCTGCAGTAAGATTGCAGGGG
ATGAGTCGAGGCACGAGAAGGCATACCAAGCCATCTTCCAGGAGATCCTC
AAGAAGGACCCGGAAGGGGGGTTGAAGAGCTTCTATGAGTTAATGAGTGA
TCAGATGCTCTCGAAGCTCCTCCTCCCCACGGGGGAGAAGGCTTGGCAAC
CGTCCGACTTTGTCCCGGACCTGACCAAGGAAGGGTGGGAAGACGAGGTA
AAGGAATTCAGGGAAAAGGCGGAGACGTTGCCGGACGAGACGCTGGTGGT
CTTGGTGGGGGACATGGTGACTGAGGAGGCGTTGCCCACTTACCAGACGC
TGTTGAACACGTTCGAGGGCGTGGATGACCCCACCGGGACGAGTCCTTCG
GCCTGGTGCCGATGGACACGGGGGTGGACGAGCGAGGAGAACAGGCACGG
GGATCTGCTCAACCGGTACTTGTACTTGACGGGGCGCGTGGACATGCGCG
CGATCGAGTGCACGATTCAGCACCTG
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Synonyms
Publications