jgi.p|Nanoce1779_2|657398, mRNA_73 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|657398
Unique NamemRNA_73
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length518
Alignment locationscaffold_3:198658..199175 -

Link to JBrowse

Properties
Property NameValue
TranscriptId657484
TrackFilteredModels2
ProteinId657398
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:198658..199175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|657398gene_73Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_73CDS_73Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|657398mRNA_73-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_73 ID=mRNA_73|Name=jgi.p|Nanoce1779_2|657398|organism=Nannochloropsis oceanica|type=mRNA|length=518bp
GAAGACCTTGTCGAGGCCGCCTTTCATGCCTGCAAAAAGGCTCGGCAACT
TAATCCCCGCTTTCCTAATGCCATCGGAGCCGCTCTGCTGTGCAATAATG
GGGACATGTTCCTCGGTTGCAGCTTGGGAGAAAACAGTAATTATTCGTCC
GGATCGGCGGAACGTGCCATTTTGCGCAAGGCGTTGCGGGAGGGCCACTG
CCCACCCTTCGAAGCGTTGGTCCTGACTATTGATGCCTCGCACAATCCAG
CAGCCTTTCCTGTCCCCGACAAGGAATGTTTCCGTCTTTTTGGGTTGCTC
CCCATCTTTCTCGTCAACAAGAATCTGGATATCCACTCCACCACCTCTGC
CGCAGTCCGTCCAGCGGCGCCCTCCTCCTCTCCATCGCCGCCCAAGCCAC
ACCGAGGAGTCGCTGTCCAAGCCATGACATCATCTCGATCTCTGCCTACA
TCCCGACACGTGTCCCCGCGTCGCGCACCCTGTGGTCGCTCCCCTCTCCG
GAAATCGTCCATGTCCAT
back to top

protein sequence of jgi.p|Nanoce1779_2|657398

>mRNA_73-protein ID=mRNA_73-protein|Name=jgi.p|Nanoce1779_2|657398|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
EDLVEAAFHACKKARQLNPRFPNAIGAALLCNNGDMFLGCSLGENSNYSS
GSAERAILRKALREGHCPPFEALVLTIDASHNPAAFPVPDKECFRLFGLL
PIFLVNKNLDIHSTTSAAVRPAAPSSSPSPPKPHRGVAVQAMTSSRSLPT
SRHVSPRRAPCGRSPLRKSSMS
back to top

mRNA from alignment at scaffold_3:198658..199175-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_73 ID=mRNA_73|Name=jgi.p|Nanoce1779_2|657398|organism=Nannochloropsis oceanica|type=mRNA|length=518bp|location=Sequence derived from alignment at scaffold_3:198658..199175- (Nannochloropsis oceanica)
GAAGACCTTGTCGAGGCCGCCTTTCATGCCTGCAAAAAGGCTCGGCAACT
TAATCCCCGCTTTCCTAATGCCATCGGAGCCGCTCTGCTGTGCAATAATG
GGGACATGTTCCTCGGTTGCAGCTTGGGAGAAAACAGTAATTATTCGTCC
GGATCGGCGGAACGTGCCATTTTGCGCAAGGCGTTGCGGGAGGGCCACTG
CCCACCCTTCGAAGCGTTGGTCCTGACTATTGATGCCTCGCACAATCCAG
CAGCCTTTCCTGTCCCCGACAAGGAATGTTTCCGTCTTTTTGGGTTGCTC
CCCATCTTTCTCGTCAACAAGAATCTGGATATCCACTCCACCACCTCTGC
CGCAGTCCGTCCAGCGGCGCCCTCCTCCTCTCCATCGCCGCCCAAGCCAC
ACCGAGGAGTCGCTGTCCAAGCCATGACATCATCTCGATCTCTGCCTACA
TCCCGACACGTGTCCCCGCGTCGCGCACCCTGTGGTCGCTCCCCTCTCCG
GAAATCGTCCATGTCCAT
back to top

Coding sequence (CDS) from alignment at scaffold_3:198658..199175-

>mRNA_73 ID=mRNA_73|Name=jgi.p|Nanoce1779_2|657398|organism=Nannochloropsis oceanica|type=CDS|length=518bp|location=Sequence derived from alignment at scaffold_3:198658..199175- (Nannochloropsis oceanica)
GAAGACCTTGTCGAGGCCGCCTTTCATGCCTGCAAAAAGGCTCGGCAACT
TAATCCCCGCTTTCCTAATGCCATCGGAGCCGCTCTGCTGTGCAATAATG
GGGACATGTTCCTCGGTTGCAGCTTGGGAGAAAACAGTAATTATTCGTCC
GGATCGGCGGAACGTGCCATTTTGCGCAAGGCGTTGCGGGAGGGCCACTG
CCCACCCTTCGAAGCGTTGGTCCTGACTATTGATGCCTCGCACAATCCAG
CAGCCTTTCCTGTCCCCGACAAGGAATGTTTCCGTCTTTTTGGGTTGCTC
CCCATCTTTCTCGTCAACAAGAATCTGGATATCCACTCCACCACCTCTGC
CGCAGTCCGTCCAGCGGCGCCCTCCTCCTCTCCATCGCCGCCCAAGCCAC
ACCGAGGAGTCGCTGTCCAAGCCATGACATCATCTCGATCTCTGCCTACA
TCCCGACACGTGTCCCCGCGTCGCGCACCCTGTGGTCGCTCCCCTCTCCG
GAAATCGTCCATGTCCAT
back to top
Synonyms
Publications