jgi.p|Nanoce1779_2|573932, mRNA_729 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573932
Unique NamemRNA_729
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1465
Alignment locationscaffold_2:299666..301462 -

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Properties
Property NameValue
TranscriptId574018
TrackFilteredModels2
ProteinId573932
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:299666..301462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573932gene_729Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573932mRNA_729-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_729CDS_729Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_729 ID=mRNA_729|Name=jgi.p|Nanoce1779_2|573932|organism=Nannochloropsis oceanica|type=mRNA|length=1465bp
AGGCGCACATGCACCGCTAGCCTCGCCCTCATCATCATCATCATCATCTA
AGATACTTCCCCTTGCTTGCAGTGCTCGAAATGCTGTCACCATCATCACT
CGAACGGCCCAAAGGGTTCGCCCTTATCAATCTCGTCCTGCAGTTCCTAG
TCCTTGTTGCGTTGGTGCTTGGTGAGCCCGCCGCTGCCTTCCAGCCGTCC
TCTCCCCTTTCCCCTTCTGGAACCACCTCGTCATCGCTGCAGCAACGCGG
ACGGTCTCGAGGAAACGTGGTCTGCAAAAAGGGGGGCAGCAGTAGCAGTG
GGCCATCGGCGTCGAAAGGCTTTGGATTCGGGGCGAAGGCTAAGGCTGAC
AAGTATAAGTACAGCGGACGTCTAAAGCCGGGTGTGCTGAGCCCAATCCG
AGAGGTGCCTGAGGAGATTATGCGGCCCGACTATGCATTGGACGGTGTCC
CCAAAGCCCGCGACCCCCCCTTGCCCTGGATGATCGAGGTCAAGAGCCCC
GAAGACATCGCCGCCATGCGTGCCTCCGGTTTGGTTGCCCGCGAAGTGCT
TGACGCTGTGGCCCGCCAAATTAAAGTAGGAATGACCACGGACGAAATCG
ACATGATCGTGCACGGGGAGACAGTCAAAAGGGGCGCCTACCCTTCTCCC
TTGAATTACCACGGCTTCCCCAAATCCTGCTGCACGAGTTTGAACGAAGT
GGTCTGTCACGGGATCCCCGACGTTTCCACTGTCCTTCAAGACGGAGACA
TTGTCAATGTGGACGTAACAGTATTCTACAAAGGCTACCACGGGGACTGC
TCCGAAACCTTCTGCGTCGGTCAAGTAGACGAAGCCGGGAAAAAATTGGT
CAAAGTCACCTACGACGCGTGGCAAAAAGCAATCGACTTTTGCAAGCCCG
GGCGGCCCTACAAGGATATCGGCGCGATCATCGAAGAATATGTCACCAAA
GAGGGGTTTACCACCGTAAGAGAATTCTGCGGACATGGATTAGGAAAGGT
CTTTCATACCACTCCGAACGTCCTCCATTTCAAGAACAGCCAACCCGCTG
GTGTGATGCAGCCCGGGCACACCTTCACCATTGAACCAATGATTTGTGAA
GGCACGAATAAACACATTCTATGGCCTGATAAGTGGACGGCCACGACGGC
AGATGGTCGACGGTCGGCGCAGTTTGAGCATACCTTGCTCATTACCCCTT
CGGGGGTTGAGGCGTTGACGGGACGCTTGCCGACGTCGCCCAAATTCTTT
TGGGAAGAATAGTGGGGTGAAGGGTAAGGGATGAGAGTGTCGGTTAATAG
CGTGAGGAGGTAAATGAATAGAGGAGAGGGGGGGAGACAGGGGAGAGGAA
ATAGCAAAGCCCGTTGAGGCCGAGTAGAGCAAATAGAAAATGTTTAAATG
TGAAATCTGATATGATGGCTGCTGTTGATGATGGTCAAAGATTTATTTAT
GAAGCGAAGTGTGGT
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protein sequence of jgi.p|Nanoce1779_2|573932

>mRNA_729-protein ID=mRNA_729-protein|Name=jgi.p|Nanoce1779_2|573932|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MLSPSSLERPKGFALINLVLQFLVLVALVLGEPAAAFQPSSPLSPSGTTS
SSLQQRGRSRGNVVCKKGGSSSSGPSASKGFGFGAKAKADKYKYSGRLKP
GVLSPIREVPEEIMRPDYALDGVPKARDPPLPWMIEVKSPEDIAAMRASG
LVAREVLDAVARQIKVGMTTDEIDMIVHGETVKRGAYPSPLNYHGFPKSC
CTSLNEVVCHGIPDVSTVLQDGDIVNVDVTVFYKGYHGDCSETFCVGQVD
EAGKKLVKVTYDAWQKAIDFCKPGRPYKDIGAIIEEYVTKEGFTTVREFC
GHGLGKVFHTTPNVLHFKNSQPAGVMQPGHTFTIEPMICEGTNKHILWPD
KWTATTADGRRSAQFEHTLLITPSGVEALTGRLPTSPKFFWEE*
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mRNA from alignment at scaffold_2:299666..301462-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_729 ID=mRNA_729|Name=jgi.p|Nanoce1779_2|573932|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp|location=Sequence derived from alignment at scaffold_2:299666..301462- (Nannochloropsis oceanica)
AGGCGCACATGCACCGCTAGCCTCGCCCTCATCATCATCATCATCATCTA
AGATACTTCCCCTTGCTTGCAGTGCTCGAAATGCTGTCACCATCATCACT
CGAACGGCCCAAAGGGTTCGCCCTTATCAATCTCGTCCTGCAGTTCCTAG
TCCTTGTTGCGTTGGTGCTTGGTGAGCCCGCCGCTGCCTTCCAGCCGTCC
TCTCCCCTTTCCCCTTCTGGAACCACCTCGTCATCGCTGCAGCAACGCGG
ACGGTCTCGAGGAAACGTGGTCTGCAAAAAGGGGGGCAGCAGTAGCAGTG
GGCCATCGGCGTCGAAAGGCTTTGGATTCGGGGCGAAGGCTAAGGCTGAC
AAGTATAAGTACAGCGGACGTCTAAAGCCGGGTGTGCTGAGCCCAATCCG
AGAGGTGCCTGAGGAGATTATGCGGCCCGACTATGCATTGGACGGGTACG
TGCCACTCGTAGATGAGTGTATTTGCATGCGTATACAGTAAGATACCTGT
CTTTTTCTGCGCAAGTGTGGGCGAATTTGGGGGTGACGACGCTGAGAGTA
TGGATGTATGAATACGTGATTTGGCTAGTTTTCTGAATGCGGAGTGAGGA
AGACTCTTTTCAGACTTTTTCACCTCTCCTGTTTGGCTCTTTTCCTTTGC
ACTCTCCTCCTTTCTTCATGCCTTGATTATTGGTCACCCGCTCGCAGCGT
AAGCTGATGTCTCTCCACGCATTCTAACATCCTTCCTCCCTCCCTTCTCC
ACGCACCCCACACGCAACCAACCACAGTGTCCCCAAAGCCCGCGACCCCC
CCTTGCCCTGGATGATCGAGGTCAAGAGCCCCGAAGACATCGCCGCCATG
CGTGCCTCCGGTTTGGTTGCCCGCGAAGTGCTTGACGCTGTGGCCCGCCA
AATTAAAGTAGGAATGACCACGGACGAAATCGACATGATCGTGCACGGGG
AGACAGTCAAAAGGGGCGCCTACCCTTCTCCCTTGAATTACCACGGCTTC
CCCAAATCCTGCTGCACGAGTTTGAACGAAGTGGTCTGTCACGGGATCCC
CGACGTTTCCACTGTCCTTCAAGACGGAGACATTGTCAATGTGGACGTAA
CAGTATTCTACAAAGGCTACCACGGGGACTGCTCCGAAACCTTCTGCGTC
GGTCAAGTAGACGAAGCCGGGAAAAAATTGGTCAAAGTCACCTACGACGC
GTGGCAAAAAGCAATCGACTTTTGCAAGCCCGGGCGGCCCTACAAGGATA
TCGGCGCGATCATCGAAGAATATGTCACCAAAGAGGGGTTTACCACCGTA
AGAGAATTCTGCGGACATGGATTAGGAAAGGTCTTTCATACCACTCCGAA
CGTCCTCCATTTCAAGAACAGCCAACCCGCTGGTGTGATGCAGCCCGGGC
ACACCTTCACCATTGAACCAATGATTTGTGAAGGCACGAATAAACACATT
CTATGGCCTGATAAGTGGACGGCCACGACGGCAGATGGTCGACGGTCGGC
GCAGTTTGAGCATACCTTGCTCATTACCCCTTCGGGGGTTGAGGCGTTGA
CGGGACGCTTGCCGACGTCGCCCAAATTCTTTTGGGAAGAATAGTGGGGT
GAAGGGTAAGGGATGAGAGTGTCGGTTAATAGCGTGAGGAGGTAAATGAA
TAGAGGAGAGGGGGGGAGACAGGGGAGAGGAAATAGCAAAGCCCGTTGAG
GCCGAGTAGAGCAAATAGAAAATGTTTAAATGTGAAATCTGATATGATGG
CTGCTGTTGATGATGGTCAAAGATTTATTTATGAAGCGAAGTGTGGT
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Coding sequence (CDS) from alignment at scaffold_2:299666..301462-

>mRNA_729 ID=mRNA_729|Name=jgi.p|Nanoce1779_2|573932|organism=Nannochloropsis oceanica|type=CDS|length=2364bp|location=Sequence derived from alignment at scaffold_2:299666..301462- (Nannochloropsis oceanica)
TGTCCCCAAAGCCCGCGACCCCCCCTTGCCCTGGATGATCGAGGTCAAGA
GCCCCGAAGACATCGCCGCCATGCGTGCCTCCGGTTTGGTTGCCCGCGAA
GTGCTTGACGCTGTGGCCCGCCAAATTAAAGTAGGAATGACCACGGACGA
AATCGACATGATCGTGCACGGGGAGACAGTCAAAAGGGGCGCCTACCCTT
CTCCCTTGAATTACCACGGCTTCCCCAAATCCTGCTGCACGAGTTTGAAC
GAAGTGGTCTGTCACGGGATCCCCGACGTTTCCACTGTCCTTCAAGACGG
AGACATTGTCAATGTGGACGTAACAGTATTCTACAAAGGCTACCACGGGG
ACTGCTCCGAAACCTTCTGCGTCGGTCAAGTAGACGAAGCCGGGAAAAAA
TTGGTCAAAGTCACCTACGACGCGTGGCAAAAAGCAATCGACTTTTGCAA
GCCCGGGCGGCCCTACAAGGATATCGGCGCGATCATCGAAGAATATGTCA
CCAAAGAGGGGTTTACCACCGTAAGAGAATTCTGCGGACATGGATTAGGA
AAGGTCTTTCATACCACTCCGAACGTCCTCCATTTCAAGAACAGCCAACC
CGCTGGTGTGATGCAGCCCGGGCACACCTTCACCATTGAACCAATGATTT
GTGAAGGCACGAATAAACACATTCTATGGCCTGATAAGTGGACGGCCACG
ACGGCAGATGGTCGACGGTCGGCGCAGTTTGAGCATACCTTGCTCATTAC
CCCTTCGGGGGTTGAGGCGTTGACGGGACGCTTGCCGACGTCGCCCAAAT
TCTTTTGGGAAGAATAGATGCTGTCACCATCATCACTCGAACGGCCCAAA
GGGTTCGCCCTTATCAATCTCGTCCTGCAGTTCCTAGTCCTTGTTGCGTT
GGTGCTTGGTGAGCCCGCCGCTGCCTTCCAGCCGTCCTCTCCCCTTTCCC
CTTCTGGAACCACCTCGTCATCGCTGCAGCAACGCGGACGGTCTCGAGGA
AACGTGGTCTGCAAAAAGGGGGGCAGCAGTAGCAGTGGGCCATCGGCGTC
GAAAGGCTTTGGATTCGGGGCGAAGGCTAAGGCTGACAAGTATAAGTACA
GCGGACGTCTAAAGCCGGGTGTGCTGAGCCCAATCCGAGAGGTGCCTGAG
GAGATTATGCGGCCCGACTATGCATTGGACGGTGTCCCCAAAGCCCGCGA
CCCCCCCTTGCCCTGGATGATCGAGGTCAAGAGCCCCGAAGACATCGCCG
CCATGCGTGCCTCCGGTTTGGTTGCCCGCGAAGTGCTTGACGCTGTGGCC
CGCCAAATTAAAGTAGGAATGACCACGGACGAAATCGACATGATCGTGCA
CGGGGAGACAGTCAAAAGGGGCGCCTACCCTTCTCCCTTGAATTACCACG
GCTTCCCCAAATCCTGCTGCACGAGTTTGAACGAAGTGGTCTGTCACGGG
ATCCCCGACGTTTCCACTGTCCTTCAAGACGGAGACATTGTCAATGTGGA
CGTAACAGTATTCTACAAAGGCTACCACGGGGACTGCTCCGAAACCTTCT
GCGTCGGTCAAGTAGACGAAGCCGGGAAAAAATTGGTCAAAGTCACCTAC
GACGCGTGGCAAAAAGCAATCGACTTTTGCAAGCCCGGGCGGCCCTACAA
GGATATCGGCGCGATCATCGAAGAATATGTCACCAAAGAGGGGTTTACCA
CCGTAAGAGAATTCTGCGGACATGGATTAGGAAAGGTCTTTCATACCACT
CCGAACGTCCTCCATTTCAAGAACAGCCAACCCGCTGGTGTGATGCAGCC
CGGGCACACCTTCACCATTGAACCAATGATTTGTGAAGGCACGAATAAAC
ACATTCTATGGCCTGATAAGTGGACGGCCACGACGGCAGATGGTCGACGG
TCGGCGCAGTTTGAGCATACCTTGCTCATTACCCCTTCGGGGGTTGAGGC
GTTGACGGGACGCTTGCCGACGTCGCCCAAATTCTTTTGGGAAGAATAGA
TGCTGTCACCATCATCACTCGAACGGCCCAAAGGGTTCGCCCTTATCAAT
CTCGTCCTGCAGTTCCTAGTCCTTGTTGCGTTGGTGCTTGGTGAGCCCGC
CGCTGCCTTCCAGCCGTCCTCTCCCCTTTCCCCTTCTGGAACCACCTCGT
CATCGCTGCAGCAACGCGGACGGTCTCGAGGAAACGTGGTCTGCAAAAAG
GGGGGCAGCAGTAGCAGTGGGCCATCGGCGTCGAAAGGCTTTGGATTCGG
GGCGAAGGCTAAGGCTGACAAGTATAAGTACAGCGGACGTCTAAAGCCGG
GTGTGCTGAGCCCAATCCGAGAGGTGCCTGAGGAGATTATGCGGCCCGAC
TATGCATTGGACGG
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Synonyms
Publications