jgi.p|Nanoce1779_2|573930, mRNA_728 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573930
Unique NamemRNA_728
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length849
Alignment locationscaffold_2:298106..299087 -

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Properties
Property NameValue
TranscriptId574016
TrackFilteredModels2
ProteinId573930
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:298106..299087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573930gene_728Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573930mRNA_728-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_728CDS_728Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_728 ID=mRNA_728|Name=jgi.p|Nanoce1779_2|573930|organism=Nannochloropsis oceanica|type=mRNA|length=849bp
CAGCATATGGACGAAAAGGGGCGGGCGCTGCAAGGCCGCCTCGATTTTTG
CGAGCGAAATGTCAAGACGCTGCAGCTTGGAGTCAAGGCATTGCTGAAAA
ACCACAAGGAAGGATGCAATGCCACGCTCGACCTTTCGCAAAAGGTTCGG
GACACGGCTGCGCAGGAGCAGTTCATCGACCTCCAAGAAGATCTCATTGC
CATTGCCGAGTGCACCAAGCGCTTGGCGGAGGAGCGAAGGATGATTATGT
GCGAGCGTGCAGAAGAGCGGGTGCTTTCTACTATCGAGTACGTGCAGGCG
CATATATTGCTTCCAACAAAGCTCTTACTTAGAGACCGGGAGCGAGCTCT
TGCCAGATCTCGGGCCATGGAGAGGAAACTCACATACTCTGGAGAACGAA
CCTTGCTAGGTATGCTCAACCTCGAGGACGACGATGACCTGAAGCGGCAA
AAGCTAGCCAATTACGGGGAATGCGCCAAGCACACGGATGAGGTGGTGGA
CAGTAATTTTCGTTGTTTCGAGAAGAGTAGGGTGATAGAAATGAAGGCTA
TGCTTGAGGAGACATTACGGGCAGAGATGCTTTACCACTGCCGGGCTTTG
GAGATACTGGAGCCTTTATGCGTTTCCATGCGTCAGCTGGACCCGAATCG
TGCAATGGTCAGCATGGCGCAGGAGCTAGATGAGCTGAACAGTGACAAGG
CGGAAGAAGAGGAAAGGGCTGAGCGGGGAAATGAAAGAGGTTTGCGGGGT
GATGCTCGACGGTGATCAGGGTAAGCAGTAATAAGGAAAAGGGAAGGCAC
GGCATAATCTTTAATTTAAAAAATTAAAGTAAGAAATAAAATAAACTGC
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protein sequence of jgi.p|Nanoce1779_2|573930

>mRNA_728-protein ID=mRNA_728-protein|Name=jgi.p|Nanoce1779_2|573930|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MDEKGRALQGRLDFCERNVKTLQLGVKALLKNHKEGCNATLDLSQKVRDT
AAQEQFIDLQEDLIAIAECTKRLAEERRMIMCERAEERVLSTIEYVQAHI
LLPTKLLLRDRERALARSRAMERKLTYSGERTLLGMLNLEDDDDLKRQKL
ANYGECAKHTDEVVDSNFRCFEKSRVIEMKAMLEETLRAEMLYHCRALEI
LEPLCVSMRQLDPNRAMVSMAQELDELNSDKAEEEERAERGNERGLRGDA
RR*
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mRNA from alignment at scaffold_2:298106..299087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_728 ID=mRNA_728|Name=jgi.p|Nanoce1779_2|573930|organism=Nannochloropsis oceanica|type=mRNA|length=982bp|location=Sequence derived from alignment at scaffold_2:298106..299087- (Nannochloropsis oceanica)
CAGCATATGGACGAAAAGGGGCGGGCGCTGCAAGGCCGCCTCGATTTTTG
CGAGCGAAATGTCAAGACGCTGCAGCTTGGAGTCAAGGCATTGCTGAAAA
ACCACAAGGAAGGATGCAATGCCACGCTCGACCTTTCGCAAAAGGTTCGG
GACACGGCTGCGCAGGAGCAGTTCATCGACCTCCAAGAAGATCTCATTGC
CATTGCCGAGTGCACCAAGCGCTTGGCGGAGGAGCGAAGGATGATTATGT
GCGAGCGTGCAGAAGAGCGGGTGCTTTCTACTATCGAGTACGTGCAGGCG
CATATATTGCTTCCAACAAAGCTCTTACTTAGAGACCGGGAGCGAGCTCT
TGCCAGATCTCGGGCCATGGAGAGGAAACTCACATGTGAGTGCTTGGGGA
GGGAAGAAGGGAGGACATGATGGGACCACGCAACACTAACAAGCAGACCG
GTCGGGCGCATTGCTTCCATGGAATATGTTTTTTCATTCATCATTTCTCA
TCTTTGTTCAACAATTAGACTCTGGAGAACGAACCTTGCTAGGTATGCTC
AACCTCGAGGACGACGATGACCTGAAGCGGCAAAAGCTAGCCAATTACGG
GGAATGCGCCAAGCACACGGATGAGGTGGTGGACAGTAATTTTCGTTGTT
TCGAGAAGAGTAGGGTGATAGAAATGAAGGCTATGCTTGAGGAGACATTA
CGGGCAGAGATGCTTTACCACTGCCGGGCTTTGGAGATACTGGAGCCTTT
ATGCGTTTCCATGCGTCAGCTGGACCCGAATCGTGCAATGGTCAGCATGG
CGCAGGAGCTAGATGAGCTGAACAGTGACAAGGCGGAAGAAGAGGAAAGG
GCTGAGCGGGGAAATGAAAGAGGTTTGCGGGGTGATGCTCGACGGTGATC
AGGGTAAGCAGTAATAAGGAAAAGGGAAGGCACGGCATAATCTTTAATTT
AAAAAATTAAAGTAAGAAATAAAATAAACTGC
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Coding sequence (CDS) from alignment at scaffold_2:298106..299087-

>mRNA_728 ID=mRNA_728|Name=jgi.p|Nanoce1779_2|573930|organism=Nannochloropsis oceanica|type=CDS|length=1518bp|location=Sequence derived from alignment at scaffold_2:298106..299087- (Nannochloropsis oceanica)
ACTCTGGAGAACGAACCTTGCTAGGTATGCTCAACCTCGAGGACGACGAT
GACCTGAAGCGGCAAAAGCTAGCCAATTACGGGGAATGCGCCAAGCACAC
GGATGAGGTGGTGGACAGTAATTTTCGTTGTTTCGAGAAGAGTAGGGTGA
TAGAAATGAAGGCTATGCTTGAGGAGACATTACGGGCAGAGATGCTTTAC
CACTGCCGGGCTTTGGAGATACTGGAGCCTTTATGCGTTTCCATGCGTCA
GCTGGACCCGAATCGTGCAATGGTCAGCATGGCGCAGGAGCTAGATGAGC
TGAACAGTGACAAGGCGGAAGAAGAGGAAAGGGCTGAGCGGGGAAATGAA
AGAGGTTTGCGGGGTGATGCTCGACGGTGAATGGACGAAAAGGGGCGGGC
GCTGCAAGGCCGCCTCGATTTTTGCGAGCGAAATGTCAAGACGCTGCAGC
TTGGAGTCAAGGCATTGCTGAAAAACCACAAGGAAGGATGCAATGCCACG
CTCGACCTTTCGCAAAAGGTTCGGGACACGGCTGCGCAGGAGCAGTTCAT
CGACCTCCAAGAAGATCTCATTGCCATTGCCGAGTGCACCAAGCGCTTGG
CGGAGGAGCGAAGGATGATTATGTGCGAGCGTGCAGAAGAGCGGGTGCTT
TCTACTATCGAGTACGTGCAGGCGCATATATTGCTTCCAACAAAGCTCTT
ACTTAGAGACCGGGAGCGAGCTCTTGCCAGATCTCGGGCCATGGAGAGGA
AACTCACATACTCTGGAGAACGAACCTTGCTAGGTATGCTCAACCTCGAG
GACGACGATGACCTGAAGCGGCAAAAGCTAGCCAATTACGGGGAATGCGC
CAAGCACACGGATGAGGTGGTGGACAGTAATTTTCGTTGTTTCGAGAAGA
GTAGGGTGATAGAAATGAAGGCTATGCTTGAGGAGACATTACGGGCAGAG
ATGCTTTACCACTGCCGGGCTTTGGAGATACTGGAGCCTTTATGCGTTTC
CATGCGTCAGCTGGACCCGAATCGTGCAATGGTCAGCATGGCGCAGGAGC
TAGATGAGCTGAACAGTGACAAGGCGGAAGAAGAGGAAAGGGCTGAGCGG
GGAAATGAAAGAGGTTTGCGGGGTGATGCTCGACGGTGAATGGACGAAAA
GGGGCGGGCGCTGCAAGGCCGCCTCGATTTTTGCGAGCGAAATGTCAAGA
CGCTGCAGCTTGGAGTCAAGGCATTGCTGAAAAACCACAAGGAAGGATGC
AATGCCACGCTCGACCTTTCGCAAAAGGTTCGGGACACGGCTGCGCAGGA
GCAGTTCATCGACCTCCAAGAAGATCTCATTGCCATTGCCGAGTGCACCA
AGCGCTTGGCGGAGGAGCGAAGGATGATTATGTGCGAGCGTGCAGAAGAG
CGGGTGCTTTCTACTATCGAGTACGTGCAGGCGCATATATTGCTTCCAAC
AAAGCTCTTACTTAGAGACCGGGAGCGAGCTCTTGCCAGATCTCGGGCCA
TGGAGAGGAAACTCACAT
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Synonyms
Publications