jgi.p|Nanoce1779_2|573929, mRNA_727 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573929
Unique NamemRNA_727
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length363
Alignment locationscaffold_2:297714..298076 +

Link to JBrowse

Properties
Property NameValue
TranscriptId574015
TrackFilteredModels2
ProteinId573929
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:297714..298076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573929gene_727Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573929mRNA_727-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_727CDS_727Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_727 ID=mRNA_727|Name=jgi.p|Nanoce1779_2|573929|organism=Nannochloropsis oceanica|type=mRNA|length=363bp
ACAGGAGCTAAGAATGACTCCGCAACGGGCATCGGGGCTACAAAAAGAAG
TTCTCAGCCTCTACCGGCAGCTTTTGCGCGCCGCCCGGCGGAAAGATCCC
ACCAAAGAGGATGGGGGGACATGGACACTTGCCCGTACTCGCTTCCGGGA
GGACGCTGGGTCGGTCAAGCGGATGGATTTCCAAAAGATTGAGTTTCTGT
TGCGCCATGGCCGAAAGCAGCTCAAATACCTGGACATGCCCAGCTTCGTC
AAGGGCACTTCCGTCACGCCCTCCTCATCGCCATCTAGATGACCGAGAAA
TGTAGAAAGTACAAGTACATATGCGCGTTGCCACAGCTAAAGCTTAACTA
AGAAAATGGGGTA
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protein sequence of jgi.p|Nanoce1779_2|573929

>mRNA_727-protein ID=mRNA_727-protein|Name=jgi.p|Nanoce1779_2|573929|organism=Nannochloropsis oceanica|type=polypeptide|length=93bp
MTPQRASGLQKEVLSLYRQLLRAARRKDPTKEDGGTWTLARTRFREDAGS
VKRMDFQKIEFLLRHGRKQLKYLDMPSFVKGTSVTPSSSPSR*
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mRNA from alignment at scaffold_2:297714..298076+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_727 ID=mRNA_727|Name=jgi.p|Nanoce1779_2|573929|organism=Nannochloropsis oceanica|type=mRNA|length=363bp|location=Sequence derived from alignment at scaffold_2:297714..298076+ (Nannochloropsis oceanica)
ACAGGAGCTAAGAATGACTCCGCAACGGGCATCGGGGCTACAAAAAGAAG
TTCTCAGCCTCTACCGGCAGCTTTTGCGCGCCGCCCGGCGGAAAGATCCC
ACCAAAGAGGATGGGGGGACATGGACACTTGCCCGTACTCGCTTCCGGGA
GGACGCTGGGTCGGTCAAGCGGATGGATTTCCAAAAGATTGAGTTTCTGT
TGCGCCATGGCCGAAAGCAGCTCAAATACCTGGACATGCCCAGCTTCGTC
AAGGGCACTTCCGTCACGCCCTCCTCATCGCCATCTAGATGACCGAGAAA
TGTAGAAAGTACAAGTACATATGCGCGTTGCCACAGCTAAAGCTTAACTA
AGAAAATGGGGTA
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Coding sequence (CDS) from alignment at scaffold_2:297714..298076+

>mRNA_727 ID=mRNA_727|Name=jgi.p|Nanoce1779_2|573929|organism=Nannochloropsis oceanica|type=CDS|length=279bp|location=Sequence derived from alignment at scaffold_2:297714..298076+ (Nannochloropsis oceanica)
ATGACTCCGCAACGGGCATCGGGGCTACAAAAAGAAGTTCTCAGCCTCTA
CCGGCAGCTTTTGCGCGCCGCCCGGCGGAAAGATCCCACCAAAGAGGATG
GGGGGACATGGACACTTGCCCGTACTCGCTTCCGGGAGGACGCTGGGTCG
GTCAAGCGGATGGATTTCCAAAAGATTGAGTTTCTGTTGCGCCATGGCCG
AAAGCAGCTCAAATACCTGGACATGCCCAGCTTCGTCAAGGGCACTTCCG
TCACGCCCTCCTCATCGCCATCTAGATGA
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Synonyms
Publications