jgi.p|Nanoce1779_2|596190, mRNA_7240 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596190
Unique NamemRNA_7240
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length890
Alignment locationscaffold_16:687806..688824 +

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Properties
Property NameValue
TranscriptId596276
TrackFilteredModels2
ProteinId596190
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:687806..688824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596190gene_7240Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596190mRNA_7240-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7240CDS_7240Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7240 ID=mRNA_7240|Name=jgi.p|Nanoce1779_2|596190|organism=Nannochloropsis oceanica|type=mRNA|length=890bp
ACAGAAATATGTCCTCCGGCGGCCCCGCTTCCGCCACGGGGCCTAGCCCT
CCCTCGTTATTCACCTCATCGAGAGACTGGTATGCGAATTGGTGCATGAC
CACGCCGTTTGTGGCTCGAAGCACGCTGCACTTGCTCTTGGCCCTCTACC
TCTTCTCCTGGCTGGTGGACTTGGCGCCTTACGTGAGCAACATTCCATAC
CTGACCATCTACAAGTTTCAACTCTGGCGGCCCTTCCTCTCCCCCTTCTA
CACGGAGGGGCTGCTCTCAGTGGTATTTCTGTGCCTGTCTTTGGGGGGAA
TGGGCGCAACTCTTGAGCAGGCAAGTACTTCCTTTTTCTGCTTGATGGCC
GTCATCTCCCTCATTACCAACTTTCTCTTCCTCCTCGTCTGCCTCCTCCT
CTCTCTCGTCATGCCCTCTGCCTTATTCTACTCCGCAGGCTCCTTTTGGA
TGATCGTCATGGGGGTCATGACTGGTAGGTGTTCCGGCAGGGAAGGGGAG
GTATTGAAGGAAGGAGAGGAAGGCGGCTTGGATGATCGTATCCAGCCAGT
TACGGATGATCTCTGGGGAGGCGAAGTGGGTCATTCATTTCCACCGTGCT
GATTATCCATCCCACCCCTCTTCCCTTGCTTTATCTCACATTTTCCTCCC
CGTATCTTTCATCGTAGTCGATTGCCTTGCCTCCGGTATACCCACCCGCC
GGCTCTTCATGCTGCCCTACCATATCCCCTCGCTCTACTTCCCTCTCCTT
CTCTTACTCCTCTTCTCACTCTTCGCTGGCCCTCGTCTCGATCTCGGCCT
TGCCGTGGGCGTCGGCTACGGCTGTGCGTGGGGATGGGCTGACGCATTCC
TCCCCGCCCTTCCTTTTCTCACTCGATTGGAGGACGAGGG
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protein sequence of jgi.p|Nanoce1779_2|596190

>mRNA_7240-protein ID=mRNA_7240-protein|Name=jgi.p|Nanoce1779_2|596190|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MSSGGPASATGPSPPSLFTSSRDWYANWCMTTPFVARSTLHLLLALYLFS
WLVDLAPYVSNIPYLTIYKFQLWRPFLSPFYTEGLLSVVFLCLSLGGMGA
TLEQASTSFFCLMAVISLITNFLFLLVCLLLSLVMPSALFYSAGSFWMIV
MGVMTGRCSGREGEVLKEGEEGGLDDRIQPVTDDLWGGEVGHSFPPC*
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mRNA from alignment at scaffold_16:687806..688824+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7240 ID=mRNA_7240|Name=jgi.p|Nanoce1779_2|596190|organism=Nannochloropsis oceanica|type=mRNA|length=1019bp|location=Sequence derived from alignment at scaffold_16:687806..688824+ (Nannochloropsis oceanica)
ACAGAAATATGTCCTCCGGCGGCCCCGCTTCCGCCACGGGGCCTAGCCCT
CCCTCGTTATTCACCTCATCGAGAGACTGGTATGCGAATTGGTGCATGAC
CACGCCGTTTGTGGCTCGAAGCACGCTGCACTTGCTCTTGGCCCTCTACC
TCTTCTCCTGGCTGGTGGACTTGGCGCCTTACGTGAGCAACATTCCATAC
CTGACCATCTACAAGTTTCAACTCTGGCGGCCCTTCCTCTCCCCCTTCTA
CACGGAGGGGCTGCTCTCAGTGGTATTTCTGTGCCTGTCTTTGGGGGGAA
TGGGCGCAACTCTTGAGCAGGTAGGGAAGGAGGGAGGGAGAAAGTGGCCT
CGATTAGATGCGATTGTCACTTTTTCTTCTTCTCCTGCGATCTCTTTTAA
ATTTCGGCATGTTTCTCACTCCCTGTCCATTCTACATCGCAGGCGAAAGG
CAAGTACTTCCTTTTTCTGCTTGATGGCCGTCATCTCCCTCATTACCAAC
TTTCTCTTCCTCCTCGTCTGCCTCCTCCTCTCTCTCGTCATGCCCTCTGC
CTTATTCTACTCCGCAGGCTCCTTTTGGATGATCGTCATGGGGGTCATGA
CTGGTAGGTGTTCCGGCAGGGAAGGGGAGGTATTGAAGGAAGGAGAGGAA
GGCGGCTTGGATGATCGTATCCAGCCAGTTACGGATGATCTCTGGGGAGG
CGAAGTGGGTCATTCATTTCCACCGTGCTGATTATCCATCCCACCCCTCT
TCCCTTGCTTTATCTCACATTTTCCTCCCCGTATCTTTCATCGTAGTCGA
TTGCCTTGCCTCCGGTATACCCACCCGCCGGCTCTTCATGCTGCCCTACC
ATATCCCCTCGCTCTACTTCCCTCTCCTTCTCTTACTCCTCTTCTCACTC
TTCGCTGGCCCTCGTCTCGATCTCGGCCTTGCCGTGGGCGTCGGCTACGG
CTGTGCGTGGGGATGGGCTGACGCATTCCTCCCCGCCCTTCCTTTTCTCA
CTCGATTGGAGGACGAGGG
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Coding sequence (CDS) from alignment at scaffold_16:687806..688824+

>mRNA_7240 ID=mRNA_7240|Name=jgi.p|Nanoce1779_2|596190|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_16:687806..688824+ (Nannochloropsis oceanica)
ATGTCCTCCGGCGGCCCCGCTTCCGCCACGGGGCCTAGCCCTCCCTCGTT
ATTCACCTCATCGAGAGACTGGTATGCGAATTGGTGCATGACCACGCCGT
TTGTGGCTCGAAGCACGCTGCACTTGCTCTTGGCCCTCTACCTCTTCTCC
TGGCTGGTGGACTTGGCGCCTTACGTGAGCAACATTCCATACCTGACCAT
CTACAAGTTTCAACTCTGGCGGCCCTTCCTCTCCCCCTTCTACACGGAGG
GGCTGCTCTCAGTGGTATTTCTGTGCCTGTCTTTGGGGGGAATGGGCGCA
ACTCTTGAGCAGGCAAGTACTTCCTTTTTCTGCTTGATGGCCGTCATCTC
CCTCATTACCAACTTTCTCTTCCTCCTCGTCTGCCTCCTCCTCTCTCTCG
TCATGCCCTCTGCCTTATTCTACTCCGCAGGCTCCTTTTGGATGATCGTC
ATGGGGGTCATGACTGGTAGGTGTTCCGGCAGGGAAGGGGAGGTATTGAA
GGAAGGAGAGGAAGGCGGCTTGGATGATCGTATCCAGCCAGTTACGGATG
ATCTCTGGGGAGGCGAAGTGGGTCATTCATTTCCACCGTGCTGAATGTCC
TCCGGCGGCCCCGCTTCCGCCACGGGGCCTAGCCCTCCCTCGTTATTCAC
CTCATCGAGAGACTGGTATGCGAATTGGTGCATGACCACGCCGTTTGTGG
CTCGAAGCACGCTGCACTTGCTCTTGGCCCTCTACCTCTTCTCCTGGCTG
GTGGACTTGGCGCCTTACGTGAGCAACATTCCATACCTGACCATCTACAA
GTTTCAACTCTGGCGGCCCTTCCTCTCCCCCTTCTACACGGAGGGGCTGC
TCTCAGTGGTATTTCTGTGCCTGTCTTTGGGGGGAATGGGCGCAACTCTT
GAGCAGGCAAGTACTTCCTTTTTCTGCTTGATGGCCGTCATCTCCCTCAT
TACCAACTTTCTCTTCCTCCTCGTCTGCCTCCTCCTCTCTCTCGTCATGC
CCTCTGCCTTATTCTACTCCGCAGGCTCCTTTTGGATGATCGTCATGGGG
GTCATGACTGGTAGGTGTTCCGGCAGGGAAGGGGAGGTATTGAAGGAAGG
AGAGGAAGGCGGCTTGGATGATCGTATCCAGCCAGTTACGGATGATCTCT
GGGGAGGCGAAGTGGGTCATTCATTTCCACCGTGCTGA
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Synonyms
Publications