jgi.p|Nanoce1779_2|573924, mRNA_724 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573924
Unique NamemRNA_724
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1541
Alignment locationscaffold_2:290430..291970 -

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Properties
Property NameValue
TranscriptId574010
TrackFilteredModels2
ProteinId573924
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:290430..291970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573924gene_724Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573924mRNA_724-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_724CDS_724Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_724 ID=mRNA_724|Name=jgi.p|Nanoce1779_2|573924|organism=Nannochloropsis oceanica|type=mRNA|length=1541bp
AATAGTCGTCAGGGTGGCGTTCAATTTGCACGCCTGGGCATCCCTGTCAT
TAAGCAGCGCCATCAACCTCCTCCCTCCGCATTCAACACATCCGTACACC
ACTCGACAAATGCGCCATGGTCTGGAATACTTCCCAAATGGACTCCACAC
AGTTTGAGATCAATACGACACCATACTTTTCATCCATAGATCCCGTTTGT
ACGAAGCCTGAGCCTCTCGACGCCAACGTCGCTCGGGTTTGGGTGAAGGT
GCCCTGCGATTATACACGACGACTCCTCATCCACGCCATTGCCCGTCGAC
AGCCCCGCTTGGCGCTAGTCAAACGAGAGGAGGATGCTTCGATCTTATGG
GCGGACTACGAGGACCTAAATTTCGACCGTGTCTTGGCTGGCCATGGCGA
GATCAAGGCCAACTCCTACCTGATTAGGAAAGGCCTTGGTCGCAAGGCTC
AGCTGGCTTACCAGTTGCGGAAGTACATGGCTAAAAGACCAGAATCAGCG
CTGCACGGAGCCATACCTGAGACATTGGTGATTGAAACCTGGGAAGCCTT
TGAGGAGGAAATGAGCTTTGGGGCCTTGGGTGCGACGTTCGATCAAAATC
TCACGGCCAACCTTTCACAGCGGGACCGCCTGGAATGGTGCCTCCGGGAT
ACCAAAGAGCGGCTCGCCCAAACGCAGGGACAGATCTGGATCCTTAAGCC
TAGTGTCACCAACAAAGGCGCGGAAGTCACGGTGCTGCGGGATTATGTGA
CAATAGCAGACGTGGTGGGGGAATGGCCGGACGTCCGAGAGTGGGTGTTG
CAAGCATATGTCACTCGACCGCTGCTTCACCGCCGAAAGAAGTTTCATTT
GCGTTGCTATGTCCTGGCTGTGGGAGATTTGTCTGTGTACGTCTGGCGGC
AGGTGTTGCTGTTGAGCTCGGCAATGGAGTACAATGAGCAGGACTTGCGA
AATCAACTTGTGCACATTACAAACACCGCTCGGCAAGTGGAAGACGGAGA
ATCGCACCTCGTGGTGGAGGAGGAGTGCGTCTTTTTGTTGGATGACTTGG
TGGCAGATTTGAAAGAAAGTCGGGGGCTTAAGTGGGGAGAAGCAGAGAGT
GTGGTGGAGGATATTCGAAAAGGGATGGAGGAGGTGACAGCAGAGCTGTT
CAAAGCCTTACATCTAGAACGCACAGTCTTTGCCCCTATCCCGCAGTGCT
TCGAGCTGCTGGGGCTGGATTTCCTTGTATCTCTCGACGAGGACAATGAG
AAAGATGAAACGCCTAAGCCACTCCCGCAAGTTCACCTGCTGGAAGTAAA
TCCGGGACCGGACTTCAAACAAACGGGGCCGCGGCTTCGTTCGGTGATAG
AGGGGCTGTTGGAAGCCACGCTTGATGTGGCGGTGCTAGATGATCATGTG
GAGGGCACGGAGGACTTGGTATTGGTGTACCAGTCGTTACACAGGCAAAA
TGGTGAATCCGGGATGCGGTTATTGGAAGGATGAAGAGGGAGTGGAGGGA
GCGAAGGGCGTAAATGTAATCTATGAGATTCGGTACCGTTA
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protein sequence of jgi.p|Nanoce1779_2|573924

>mRNA_724-protein ID=mRNA_724-protein|Name=jgi.p|Nanoce1779_2|573924|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MVWNTSQMDSTQFEINTTPYFSSIDPVCTKPEPLDANVARVWVKVPCDYT
RRLLIHAIARRQPRLALVKREEDASILWADYEDLNFDRVLAGHGEIKANS
YLIRKGLGRKAQLAYQLRKYMAKRPESALHGAIPETLVIETWEAFEEEMS
FGALGATFDQNLTANLSQRDRLEWCLRDTKERLAQTQGQIWILKPSVTNK
GAEVTVLRDYVTIADVVGEWPDVREWVLQAYVTRPLLHRRKKFHLRCYVL
AVGDLSVYVWRQVLLLSSAMEYNEQDLRNQLVHITNTARQVEDGESHLVV
EEECVFLLDDLVADLKESRGLKWGEAESVVEDIRKGMEEVTAELFKALHL
ERTVFAPIPQCFELLGLDFLVSLDEDNEKDETPKPLPQVHLLEVNPGPDF
KQTGPRLRSVIEGLLEATLDVAVLDDHVEGTEDLVLVYQSLHRQNGESGM
RLLEG*
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mRNA from alignment at scaffold_2:290430..291970-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_724 ID=mRNA_724|Name=jgi.p|Nanoce1779_2|573924|organism=Nannochloropsis oceanica|type=mRNA|length=1541bp|location=Sequence derived from alignment at scaffold_2:290430..291970- (Nannochloropsis oceanica)
AATAGTCGTCAGGGTGGCGTTCAATTTGCACGCCTGGGCATCCCTGTCAT
TAAGCAGCGCCATCAACCTCCTCCCTCCGCATTCAACACATCCGTACACC
ACTCGACAAATGCGCCATGGTCTGGAATACTTCCCAAATGGACTCCACAC
AGTTTGAGATCAATACGACACCATACTTTTCATCCATAGATCCCGTTTGT
ACGAAGCCTGAGCCTCTCGACGCCAACGTCGCTCGGGTTTGGGTGAAGGT
GCCCTGCGATTATACACGACGACTCCTCATCCACGCCATTGCCCGTCGAC
AGCCCCGCTTGGCGCTAGTCAAACGAGAGGAGGATGCTTCGATCTTATGG
GCGGACTACGAGGACCTAAATTTCGACCGTGTCTTGGCTGGCCATGGCGA
GATCAAGGCCAACTCCTACCTGATTAGGAAAGGCCTTGGTCGCAAGGCTC
AGCTGGCTTACCAGTTGCGGAAGTACATGGCTAAAAGACCAGAATCAGCG
CTGCACGGAGCCATACCTGAGACATTGGTGATTGAAACCTGGGAAGCCTT
TGAGGAGGAAATGAGCTTTGGGGCCTTGGGTGCGACGTTCGATCAAAATC
TCACGGCCAACCTTTCACAGCGGGACCGCCTGGAATGGTGCCTCCGGGAT
ACCAAAGAGCGGCTCGCCCAAACGCAGGGACAGATCTGGATCCTTAAGCC
TAGTGTCACCAACAAAGGCGCGGAAGTCACGGTGCTGCGGGATTATGTGA
CAATAGCAGACGTGGTGGGGGAATGGCCGGACGTCCGAGAGTGGGTGTTG
CAAGCATATGTCACTCGACCGCTGCTTCACCGCCGAAAGAAGTTTCATTT
GCGTTGCTATGTCCTGGCTGTGGGAGATTTGTCTGTGTACGTCTGGCGGC
AGGTGTTGCTGTTGAGCTCGGCAATGGAGTACAATGAGCAGGACTTGCGA
AATCAACTTGTGCACATTACAAACACCGCTCGGCAAGTGGAAGACGGAGA
ATCGCACCTCGTGGTGGAGGAGGAGTGCGTCTTTTTGTTGGATGACTTGG
TGGCAGATTTGAAAGAAAGTCGGGGGCTTAAGTGGGGAGAAGCAGAGAGT
GTGGTGGAGGATATTCGAAAAGGGATGGAGGAGGTGACAGCAGAGCTGTT
CAAAGCCTTACATCTAGAACGCACAGTCTTTGCCCCTATCCCGCAGTGCT
TCGAGCTGCTGGGGCTGGATTTCCTTGTATCTCTCGACGAGGACAATGAG
AAAGATGAAACGCCTAAGCCACTCCCGCAAGTTCACCTGCTGGAAGTAAA
TCCGGGACCGGACTTCAAACAAACGGGGCCGCGGCTTCGTTCGGTGATAG
AGGGGCTGTTGGAAGCCACGCTTGATGTGGCGGTGCTAGATGATCATGTG
GAGGGCACGGAGGACTTGGTATTGGTGTACCAGTCGTTACACAGGCAAAA
TGGTGAATCCGGGATGCGGTTATTGGAAGGATGAAGAGGGAGTGGAGGGA
GCGAAGGGCGTAAATGTAATCTATGAGATTCGGTACCGTTA
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Coding sequence (CDS) from alignment at scaffold_2:290430..291970-

>mRNA_724 ID=mRNA_724|Name=jgi.p|Nanoce1779_2|573924|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at scaffold_2:290430..291970- (Nannochloropsis oceanica)
ATGGTCTGGAATACTTCCCAAATGGACTCCACACAGTTTGAGATCAATAC
GACACCATACTTTTCATCCATAGATCCCGTTTGTACGAAGCCTGAGCCTC
TCGACGCCAACGTCGCTCGGGTTTGGGTGAAGGTGCCCTGCGATTATACA
CGACGACTCCTCATCCACGCCATTGCCCGTCGACAGCCCCGCTTGGCGCT
AGTCAAACGAGAGGAGGATGCTTCGATCTTATGGGCGGACTACGAGGACC
TAAATTTCGACCGTGTCTTGGCTGGCCATGGCGAGATCAAGGCCAACTCC
TACCTGATTAGGAAAGGCCTTGGTCGCAAGGCTCAGCTGGCTTACCAGTT
GCGGAAGTACATGGCTAAAAGACCAGAATCAGCGCTGCACGGAGCCATAC
CTGAGACATTGGTGATTGAAACCTGGGAAGCCTTTGAGGAGGAAATGAGC
TTTGGGGCCTTGGGTGCGACGTTCGATCAAAATCTCACGGCCAACCTTTC
ACAGCGGGACCGCCTGGAATGGTGCCTCCGGGATACCAAAGAGCGGCTCG
CCCAAACGCAGGGACAGATCTGGATCCTTAAGCCTAGTGTCACCAACAAA
GGCGCGGAAGTCACGGTGCTGCGGGATTATGTGACAATAGCAGACGTGGT
GGGGGAATGGCCGGACGTCCGAGAGTGGGTGTTGCAAGCATATGTCACTC
GACCGCTGCTTCACCGCCGAAAGAAGTTTCATTTGCGTTGCTATGTCCTG
GCTGTGGGAGATTTGTCTGTGTACGTCTGGCGGCAGGTGTTGCTGTTGAG
CTCGGCAATGGAGTACAATGAGCAGGACTTGCGAAATCAACTTGTGCACA
TTACAAACACCGCTCGGCAAGTGGAAGACGGAGAATCGCACCTCGTGGTG
GAGGAGGAGTGCGTCTTTTTGTTGGATGACTTGGTGGCAGATTTGAAAGA
AAGTCGGGGGCTTAAGTGGGGAGAAGCAGAGAGTGTGGTGGAGGATATTC
GAAAAGGGATGGAGGAGGTGACAGCAGAGCTGTTCAAAGCCTTACATCTA
GAACGCACAGTCTTTGCCCCTATCCCGCAGTGCTTCGAGCTGCTGGGGCT
GGATTTCCTTGTATCTCTCGACGAGGACAATGAGAAAGATGAAACGCCTA
AGCCACTCCCGCAAGTTCACCTGCTGGAAGTAAATCCGGGACCGGACTTC
AAACAAACGGGGCCGCGGCTTCGTTCGGTGATAGAGGGGCTGTTGGAAGC
CACGCTTGATGTGGCGGTGCTAGATGATCATGTGGAGGGCACGGAGGACT
TGGTATTGGTGTACCAGTCGTTACACAGGCAAAATGGTGAATCCGGGATG
CGGTTATTGGAAGGATGA
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Synonyms
Publications