jgi.p|Nanoce1779_2|596152, mRNA_7232 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596152
Unique NamemRNA_7232
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length354
Alignment locationscaffold_16:656568..656921 +

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Properties
Property NameValue
TranscriptId596238
TrackFilteredModels2
ProteinId596152
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:656568..656921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596152gene_7232Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596152mRNA_7232-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7232CDS_7232Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7232 ID=mRNA_7232|Name=jgi.p|Nanoce1779_2|596152|organism=Nannochloropsis oceanica|type=mRNA|length=354bp
GGGGCATATGCAACGCGAGCCATCCGAGCTATGGATGCGTCTGGAAAGAC
GGTGGAATGGTCTAGGGTGGTCTGAGGGTGGAATGAAGGAGGGTGATGAG
AGTGACATTTGGGATACTCTGCCTGGTTGAAGGAGCACGCGCATCGACAC
GGAGCGTTCCAGTGCGCTTGAAACAGTGCGTAAAGAATGGCCGTCGTCCA
CGCAAGCCTTCACTGAGTGAATACGAGCTTATGCAGCCTATTAATTCAAG
GGTAGCCTGGCTGAATTTCGATCGAGAACACAACAGAACTGCGCCTTCAG
GTTGTGTATTGAGGAAGGGAAAGTAGTAGAGGGGGGTGTCAAGCTTTGGC
GATG
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protein sequence of jgi.p|Nanoce1779_2|596152

>mRNA_7232-protein ID=mRNA_7232-protein|Name=jgi.p|Nanoce1779_2|596152|organism=Nannochloropsis oceanica|type=polypeptide|length=77bp
MRVTFGILCLVEGARASTRSVPVRLKQCVKNGRRPRKPSLSEYELMQPIN
SRVAWLNFDREHNRTAPSGCVLRKGK*
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mRNA from alignment at scaffold_16:656568..656921+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7232 ID=mRNA_7232|Name=jgi.p|Nanoce1779_2|596152|organism=Nannochloropsis oceanica|type=mRNA|length=354bp|location=Sequence derived from alignment at scaffold_16:656568..656921+ (Nannochloropsis oceanica)
GGGGCATATGCAACGCGAGCCATCCGAGCTATGGATGCGTCTGGAAAGAC
GGTGGAATGGTCTAGGGTGGTCTGAGGGTGGAATGAAGGAGGGTGATGAG
AGTGACATTTGGGATACTCTGCCTGGTTGAAGGAGCACGCGCATCGACAC
GGAGCGTTCCAGTGCGCTTGAAACAGTGCGTAAAGAATGGCCGTCGTCCA
CGCAAGCCTTCACTGAGTGAATACGAGCTTATGCAGCCTATTAATTCAAG
GGTAGCCTGGCTGAATTTCGATCGAGAACACAACAGAACTGCGCCTTCAG
GTTGTGTATTGAGGAAGGGAAAGTAGTAGAGGGGGGTGTCAAGCTTTGGC
GATG
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Coding sequence (CDS) from alignment at scaffold_16:656568..656921+

>mRNA_7232 ID=mRNA_7232|Name=jgi.p|Nanoce1779_2|596152|organism=Nannochloropsis oceanica|type=CDS|length=231bp|location=Sequence derived from alignment at scaffold_16:656568..656921+ (Nannochloropsis oceanica)
ATGAGAGTGACATTTGGGATACTCTGCCTGGTTGAAGGAGCACGCGCATC
GACACGGAGCGTTCCAGTGCGCTTGAAACAGTGCGTAAAGAATGGCCGTC
GTCCACGCAAGCCTTCACTGAGTGAATACGAGCTTATGCAGCCTATTAAT
TCAAGGGTAGCCTGGCTGAATTTCGATCGAGAACACAACAGAACTGCGCC
TTCAGGTTGTGTATTGAGGAAGGGAAAGTAG
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Synonyms
Publications